Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48498 * 109.47060 * 269.99894 * 3 2 1 5 5 H 1.48499 * 109.47327 * 30.00203 * 3 2 1 6 6 H 1.48505 * 109.47043 * 150.00470 * 3 2 1 7 7 C 1.39894 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00074 * 175.55973 * 7 2 1 9 9 C 1.41139 * 120.00325 * 355.55827 * 7 2 1 10 10 C 1.40877 * 120.16371 * 214.78580 * 9 7 2 11 11 C 1.36357 * 119.83566 * 180.02562 * 10 9 7 12 12 C 1.39515 * 120.15988 * 0.02562 * 11 10 9 13 13 N 1.39127 * 119.83420 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99808 * 35.30935 * 13 12 11 15 15 O 1.21654 * 120.00436 * 355.71283 * 14 13 12 16 16 C 1.47130 * 120.00002 * 175.44035 * 14 13 12 17 17 C 1.35137 * 122.49617 * 180.02562 * 16 14 13 18 18 S 1.76186 * 108.21808 * 179.91117 * 17 16 14 19 19 C 1.76055 * 90.16230 * 0.29169 * 18 17 16 20 20 O 1.35492 * 125.17782 * 179.86206 * 19 18 17 21 21 N 1.29250 * 109.64639 * 359.83172 * 19 18 17 22 22 C 1.39506 * 120.33263 * 0.22516 * 12 11 10 23 23 C 1.36365 * 120.16458 * 359.49233 * 22 12 11 24 24 H 0.96998 * 119.99997 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.08177 * 359.97438 * 10 9 7 26 26 H 1.07991 * 119.92181 * 179.97438 * 11 10 9 27 27 H 0.97000 * 119.99938 * 215.30489 * 13 12 11 28 28 H 1.08004 * 125.89043 * 0.02562 * 17 16 14 29 29 H 0.96695 * 114.00004 * 269.96689 * 20 19 18 30 30 H 1.08002 * 119.92471 * 179.72447 * 22 12 11 31 31 H 1.07996 * 120.08630 * 180.25848 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5404 1.4403 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0730 9 6 1.3058 -2.4321 0.0936 10 6 1.8652 -3.5185 0.7946 11 6 1.1809 -4.6948 0.8809 12 6 -0.0699 -4.8240 0.2766 13 7 -0.7619 -6.0275 0.3684 14 6 -0.6805 -6.7676 1.4919 15 8 0.0585 -6.4234 2.3948 16 6 -1.4899 -7.9886 1.6287 17 6 -1.4482 -8.7674 2.7323 18 16 -2.5577 -10.1157 2.4972 19 6 -2.9763 -9.4996 0.9020 20 8 -3.8565 -10.0765 0.0487 21 7 -2.3166 -8.4129 0.6690 22 6 -0.6279 -3.7543 -0.4238 23 6 0.0421 -2.5700 -0.5136 24 1 -0.4850 0.8400 0.0004 25 1 2.8340 -3.4202 1.2619 26 1 1.6086 -5.5286 1.4176 27 1 -1.3030 -6.3339 -0.3761 28 1 -0.8410 -8.5923 3.6082 29 1 -3.4568 -10.7180 -0.5545 30 1 -1.5947 -3.8631 -0.8928 31 1 -0.3929 -1.7414 -1.0526 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336216743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = -22.840626 kcal Electronic energy + Delta-G solvation = -19198.407537 eV Core-core repulsion = 15957.233382 eV Total energy + Delta-G solvation = -3241.174155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.74732 -40.38959 -39.08358 -38.05234 -36.24060 -34.72453 -31.52649 -31.34415 -30.67756 -27.60277 -25.94458 -23.97148 -23.12996 -22.26588 -20.92423 -20.34277 -19.30027 -18.93032 -18.39131 -17.27768 -17.01942 -16.89378 -16.30127 -15.82237 -15.59335 -15.26845 -14.93660 -14.52235 -14.24778 -13.98791 -13.62130 -13.29473 -13.09216 -12.89219 -12.85618 -12.78350 -12.50111 -11.84878 -11.42390 -11.27804 -11.07492 -10.82712 -10.70157 -10.67893 -9.96183 -9.49619 -8.76325 -8.51216 -6.34250 -0.70343 -0.11320 0.31021 0.56476 0.98866 1.13543 1.40473 1.49195 1.55741 2.15628 2.21176 2.25242 2.49818 2.80233 3.56742 3.68221 4.06284 4.12165 4.36709 4.50257 4.62968 4.91123 5.08884 5.12636 5.31367 5.39641 5.67843 5.86101 5.94518 6.08810 6.17096 6.35432 6.37860 6.63115 6.66628 6.95389 6.96176 7.20722 8.41516 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.003037 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.454706 B = 9217.990632 C = 9569.375934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.495 4.495 8 H 0.075 0.925 9 C 0.071 3.929 10 C -0.218 4.218 11 C -0.093 4.093 12 C 0.012 3.988 13 N -0.627 5.627 14 C 0.574 3.426 15 O -0.558 6.558 16 C 0.009 3.991 17 C -0.169 4.169 18 S 0.186 5.814 19 C 0.255 3.745 20 O -0.433 6.433 21 N -0.490 5.490 22 C -0.117 4.117 23 C -0.158 4.158 24 H 0.285 0.715 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.418 0.582 28 H 0.204 0.796 29 H 0.433 0.567 30 H 0.119 0.881 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -19.442 1.181 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.068 3.932 10 C -0.238 4.238 11 C -0.113 4.113 12 C -0.082 4.082 13 N -0.269 5.269 14 C 0.360 3.640 15 O -0.438 6.438 16 C -0.123 4.123 17 C -0.311 4.311 18 S 0.435 5.565 19 C -0.065 4.065 20 O -0.244 6.244 21 N -0.218 5.218 22 C -0.137 4.137 23 C -0.178 4.178 24 H 0.096 0.904 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.255 0.745 28 H 0.220 0.780 29 H 0.296 0.704 30 H 0.137 0.863 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.627 -19.389 2.106 20.941 hybrid contribution 0.786 1.197 -0.689 1.589 sum -6.841 -18.192 1.417 19.488 Atomic orbital electron populations 1.69835 1.08662 1.30044 1.38273 1.26776 0.95801 1.04417 0.91506 0.85077 0.78685 0.75662 0.79477 1.18412 1.19462 1.18526 1.19747 0.94970 0.91227 1.46641 0.90640 1.18051 0.93181 0.92780 0.89165 1.20943 1.01726 0.95250 1.05902 1.20526 0.93329 0.97644 0.99762 1.17359 0.93871 0.86875 1.10072 1.42722 1.47654 1.19569 1.16985 1.17577 0.81725 0.82757 0.81954 1.90791 1.40542 1.71207 1.41236 1.19539 1.01037 0.99086 0.92609 1.27443 1.02712 0.97976 1.02998 1.85014 1.34156 1.22265 1.15094 1.25164 0.94478 0.92339 0.94517 1.84837 1.30318 1.59666 1.49598 1.66647 1.08779 1.14227 1.32128 1.20544 0.99197 0.92268 1.01693 1.21168 0.97594 0.96214 1.02864 0.90428 0.88068 0.86989 0.74493 0.77950 0.70407 0.86283 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.90 10.60 21.82 0.23 -44.67 16 2 C 0.03 1.40 5.42 85.24 0.46 1.86 16 3 Si 0.99 39.35 29.56 68.60 2.03 41.38 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -27.40 9.02 23.38 0.21 -27.19 16 8 H 0.08 4.01 7.85 -2.91 -0.02 3.99 16 9 C 0.07 3.95 5.55 -21.27 -0.12 3.83 16 10 C -0.22 -11.50 9.74 22.48 0.22 -11.28 16 11 C -0.09 -4.58 8.61 22.14 0.19 -4.39 16 12 C 0.01 0.54 6.30 38.60 0.24 0.78 16 13 N -0.63 -23.92 5.29 -306.29 -1.62 -25.54 16 14 C 0.57 21.40 7.62 86.58 0.66 22.06 16 15 O -0.56 -24.29 14.08 -4.20 -0.06 -24.35 16 16 C 0.01 0.25 6.67 40.50 0.27 0.52 16 17 C -0.17 -3.63 10.84 67.11 0.73 -2.91 16 18 S 0.19 2.57 23.42 -56.49 -1.32 1.25 16 19 C 0.26 4.58 8.88 130.62 1.16 5.74 16 20 O -0.43 -5.36 13.64 -87.93 -1.20 -6.55 16 21 N -0.49 -12.34 10.02 -304.26 -3.05 -15.39 16 22 C -0.12 -5.54 9.90 22.14 0.22 -5.32 16 23 C -0.16 -8.49 8.62 22.48 0.19 -8.30 16 24 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 25 H 0.10 5.06 8.06 -2.91 -0.02 5.04 16 26 H 0.11 5.40 6.22 -2.92 -0.02 5.38 16 27 H 0.42 13.74 8.30 -92.71 -0.77 12.97 16 28 H 0.20 3.92 8.01 -2.91 -0.02 3.90 16 29 H 0.43 0.42 9.06 -74.06 -0.67 -0.26 16 30 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.12 6.66 6.13 -2.91 -0.02 6.64 16 Total: -1.00 -70.30 295.07 -0.77 -71.07 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.22 Total: 27.41 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 4.44 Total: -24.60 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -4.44 Total: -85.60 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.26 Total: -30.91 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.32 Total: 1.25 kcal Total: -70.30 -0.77 -71.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336216743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.229 kcal (2) G-P(sol) polarization free energy of solvation -70.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds