Wall clock time and date at job start Tue Mar 31 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99644 * 2 1 4 4 H 1.48502 * 109.47066 * 269.99774 * 3 2 1 5 5 H 1.48502 * 109.47538 * 29.99796 * 3 2 1 6 6 H 1.48509 * 109.47245 * 149.99813 * 3 2 1 7 7 C 1.38971 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00381 * 0.02562 * 7 2 1 9 9 N 1.36950 * 119.99698 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99864 * 180.02562 * 9 7 2 11 11 O 1.21682 * 120.00113 * 359.97438 * 10 9 7 12 12 C 1.47078 * 120.00160 * 179.97438 * 10 9 7 13 13 C 1.35199 * 122.49101 * 179.97438 * 12 10 9 14 14 S 1.76191 * 108.23956 * 179.75760 * 13 12 10 15 15 C 1.76052 * 90.17283 * 0.33383 * 14 13 12 16 16 N 1.38594 * 125.17302 * 179.97438 * 15 14 13 17 17 C 1.39164 * 119.99957 * 5.01765 * 16 15 14 18 18 C 1.39119 * 119.69772 * 174.63740 * 17 16 15 19 19 C 1.38318 * 119.09117 * 179.70028 * 18 17 16 20 20 C 1.38871 * 118.50315 * 0.58709 * 19 18 17 21 21 C 1.38041 * 119.32873 * 359.43265 * 20 19 18 22 22 N 1.31961 * 120.85224 * 0.27988 * 21 20 19 23 23 N 1.29438 * 109.64511 * 359.66244 * 15 14 13 24 24 H 0.97003 * 120.00149 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00163 * 0.02562 * 9 7 2 26 26 H 1.08000 * 125.88140 * 0.04837 * 13 12 10 27 27 H 0.97002 * 120.00102 * 185.01354 * 16 15 14 28 28 H 1.08000 * 120.45670 * 359.97206 * 18 17 16 29 29 H 1.08004 * 120.74959 * 180.31450 * 19 18 17 30 30 H 1.08009 * 120.33864 * 179.71265 * 20 19 18 31 31 H 1.08001 * 119.58129 * 180.26077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6528 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0090 -1.2035 0.0005 8 1 1.4692 -2.1388 0.0005 9 7 3.3785 -1.2034 0.0011 10 6 4.0525 -2.3706 0.0011 11 8 3.4441 -3.4244 0.0011 12 6 5.5232 -2.3705 0.0011 13 6 6.2495 -3.5109 0.0016 14 16 7.9572 -3.0771 -0.0057 15 6 7.5289 -1.3695 0.0014 16 7 8.4336 -0.3195 0.0005 17 6 9.7968 -0.5757 -0.1119 18 6 10.6903 0.4846 -0.2249 19 6 12.0431 0.2158 -0.3296 20 6 12.4573 -1.1097 -0.3303 21 6 11.5155 -2.1124 -0.2153 22 7 10.2316 -1.8262 -0.1109 23 7 6.2407 -1.2439 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 3.8635 -0.3634 0.0014 26 1 5.8515 -4.5149 0.0013 27 1 8.1165 0.5939 0.0781 28 1 10.3331 1.5038 -0.2263 29 1 12.7608 1.0186 -0.4135 30 1 13.5061 -1.3536 -0.4153 31 1 11.8335 -3.1446 -0.2111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339922160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:25 Heat of formation + Delta-G solvation = 63.410377 kcal Electronic energy + Delta-G solvation = -19250.555309 eV Core-core repulsion = 16045.414030 eV Total energy + Delta-G solvation = -3205.141280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76448 -39.45919 -37.65058 -35.87655 -34.00875 -32.84815 -31.67450 -30.78432 -28.74832 -25.96903 -24.59675 -23.78683 -22.91529 -21.06623 -19.53366 -18.88587 -17.85032 -17.36692 -16.83768 -16.40103 -15.68216 -15.33964 -15.21938 -14.91396 -14.61995 -14.23119 -13.67285 -13.55557 -13.13090 -12.94322 -12.58618 -12.41476 -12.24371 -11.54222 -11.35708 -11.17069 -10.54843 -10.32908 -10.02021 -9.70310 -9.60268 -9.50431 -9.32408 -8.73480 -8.66708 -8.18962 -7.66964 -6.38303 -3.82133 0.62218 0.86904 1.31214 1.36842 2.06870 2.56199 2.69600 3.11311 3.14253 3.16201 3.47905 3.99473 4.09658 4.32674 4.43530 4.63712 4.66434 4.75505 4.86983 5.13690 5.30010 5.30797 5.52763 5.80741 5.84590 6.01770 6.11158 6.36626 6.60578 6.78194 7.52861 7.62599 7.95505 8.13347 8.59757 8.90453 9.41239 9.85778 10.73397 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.004113 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.053069 B = 6805.584937 C = 7919.044240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.044 3.956 3 Si 0.877 3.123 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.300 4.300 8 H 0.124 0.876 9 N -0.557 5.557 10 C 0.506 3.494 11 O -0.578 6.578 12 C 0.068 3.932 13 C -0.258 4.258 14 S 0.188 5.812 15 C 0.284 3.716 16 N -0.608 5.608 17 C 0.385 3.615 18 C -0.211 4.211 19 C -0.034 4.034 20 C -0.218 4.218 21 C 0.153 3.847 22 N -0.530 5.530 23 N -0.507 5.507 24 H 0.276 0.724 25 H 0.382 0.618 26 H 0.181 0.819 27 H 0.429 0.571 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.080 2.269 -0.458 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.160 4.160 3 Si 0.703 3.297 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.429 4.429 8 H 0.141 0.859 9 N -0.193 5.193 10 C 0.291 3.709 11 O -0.463 6.463 12 C -0.063 4.063 13 C -0.401 4.401 14 S 0.436 5.564 15 C -0.087 4.087 16 N -0.239 5.239 17 C 0.151 3.849 18 C -0.236 4.236 19 C -0.060 4.060 20 C -0.240 4.240 21 C -0.003 4.003 22 N -0.247 5.247 23 N -0.231 5.231 24 H 0.087 0.913 25 H 0.216 0.784 26 H 0.199 0.801 27 H 0.270 0.730 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 27.486 0.928 -0.393 27.505 hybrid contribution 0.036 2.555 -0.021 2.556 sum 27.523 3.484 -0.413 27.745 Atomic orbital electron populations 1.69631 1.05731 1.27909 1.47495 1.25096 0.95553 0.98276 0.97110 0.86663 0.80227 0.83521 0.79302 1.19344 1.19972 1.18763 1.19571 0.79320 0.96915 1.47100 0.85860 1.42133 1.07375 1.06801 1.62979 1.16561 0.83444 0.84748 0.86163 1.90670 1.67692 1.30900 1.57005 1.20284 0.96034 0.86147 1.03860 1.27468 0.97779 1.03729 1.11105 1.85484 1.01638 0.97789 1.71480 1.23921 0.89538 0.92436 1.02830 1.41061 1.00866 1.07628 1.74335 1.18242 0.83555 0.90234 0.92906 1.21309 0.93532 0.99035 1.09700 1.21375 0.94715 0.97173 0.92720 1.21956 1.01359 0.93485 1.07221 1.22470 0.86085 1.00210 0.91571 1.66520 1.18837 1.19216 1.20091 1.66597 1.02588 1.31840 1.22087 0.91341 0.78414 0.80145 0.72984 0.84371 0.84357 0.84522 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.62 13.96 55.50 0.77 -24.84 16 2 C 0.04 1.26 5.50 -17.46 -0.10 1.16 16 3 Si 0.88 20.29 27.74 -169.99 -4.71 15.58 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.79 6.52 56.52 0.37 -5.42 16 7 C -0.30 -8.88 10.16 -14.99 -0.15 -9.04 16 8 H 0.12 4.07 7.38 -52.49 -0.39 3.68 16 9 N -0.56 -14.87 5.08 -12.05 -0.06 -14.93 16 10 C 0.51 13.25 7.74 -12.68 -0.10 13.15 16 11 O -0.58 -16.82 16.24 5.20 0.08 -16.73 16 12 C 0.07 1.47 6.67 -84.61 -0.56 0.91 16 13 C -0.26 -4.75 10.84 29.65 0.32 -4.42 16 14 S 0.19 2.76 20.23 -107.50 -2.17 0.59 16 15 C 0.28 4.56 8.38 -87.90 -0.74 3.82 16 16 N -0.61 -7.47 5.53 -12.06 -0.07 -7.54 16 17 C 0.38 4.10 7.44 -154.87 -1.15 2.95 16 18 C -0.21 -1.61 9.94 -39.23 -0.39 -2.00 16 19 C -0.03 -0.20 10.17 -39.32 -0.40 -0.60 16 20 C -0.22 -1.28 10.10 -39.42 -0.40 -1.68 16 21 C 0.15 1.17 11.17 -17.57 -0.20 0.97 16 22 N -0.53 -5.75 6.85 -12.40 -0.08 -5.84 16 23 N -0.51 -9.92 10.02 -10.56 -0.11 -10.02 16 24 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.38 9.43 5.23 -40.82 -0.21 9.22 16 26 H 0.18 3.17 8.01 -52.49 -0.42 2.75 16 27 H 0.43 4.38 8.82 -40.82 -0.36 4.02 16 28 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 30 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 31 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -35.41 294.47 -8.01 -43.42 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -2.24 Total: 10.66 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -3.86 Total: 5.22 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.46 Total: -63.18 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.08 Total: -16.73 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.71 Total: 15.58 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.17 Total: 0.59 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.41 -8.01 -43.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.833 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds