Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99644 * 2 1 4 4 H 1.48502 * 109.47066 * 269.99774 * 3 2 1 5 5 H 1.48502 * 109.47538 * 29.99796 * 3 2 1 6 6 H 1.48509 * 109.47245 * 149.99813 * 3 2 1 7 7 C 1.38971 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00381 * 0.02562 * 7 2 1 9 9 N 1.36950 * 119.99698 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99864 * 180.02562 * 9 7 2 11 11 O 1.21682 * 120.00113 * 359.97438 * 10 9 7 12 12 C 1.47078 * 120.00160 * 179.97438 * 10 9 7 13 13 C 1.35199 * 122.49101 * 179.97438 * 12 10 9 14 14 S 1.76191 * 108.23956 * 179.75760 * 13 12 10 15 15 C 1.76052 * 90.17283 * 0.33383 * 14 13 12 16 16 N 1.38594 * 125.17302 * 179.97438 * 15 14 13 17 17 C 1.39164 * 119.99957 * 5.01765 * 16 15 14 18 18 C 1.39119 * 119.69772 * 174.63740 * 17 16 15 19 19 C 1.38318 * 119.09117 * 179.70028 * 18 17 16 20 20 C 1.38871 * 118.50315 * 0.58709 * 19 18 17 21 21 C 1.38041 * 119.32873 * 359.43265 * 20 19 18 22 22 N 1.31961 * 120.85224 * 0.27988 * 21 20 19 23 23 N 1.29438 * 109.64511 * 359.66244 * 15 14 13 24 24 H 0.97003 * 120.00149 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00163 * 0.02562 * 9 7 2 26 26 H 1.08000 * 125.88140 * 0.04837 * 13 12 10 27 27 H 0.97002 * 120.00102 * 185.01354 * 16 15 14 28 28 H 1.08000 * 120.45670 * 359.97206 * 18 17 16 29 29 H 1.08004 * 120.74959 * 180.31450 * 19 18 17 30 30 H 1.08009 * 120.33864 * 179.71265 * 20 19 18 31 31 H 1.08001 * 119.58129 * 180.26077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6528 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0090 -1.2035 0.0005 8 1 1.4692 -2.1388 0.0005 9 7 3.3785 -1.2034 0.0011 10 6 4.0525 -2.3706 0.0011 11 8 3.4441 -3.4244 0.0011 12 6 5.5232 -2.3705 0.0011 13 6 6.2495 -3.5109 0.0016 14 16 7.9572 -3.0771 -0.0057 15 6 7.5289 -1.3695 0.0014 16 7 8.4336 -0.3195 0.0005 17 6 9.7968 -0.5757 -0.1119 18 6 10.6903 0.4846 -0.2249 19 6 12.0431 0.2158 -0.3296 20 6 12.4573 -1.1097 -0.3303 21 6 11.5155 -2.1124 -0.2153 22 7 10.2316 -1.8262 -0.1109 23 7 6.2407 -1.2439 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 3.8635 -0.3634 0.0014 26 1 5.8515 -4.5149 0.0013 27 1 8.1165 0.5939 0.0781 28 1 10.3331 1.5038 -0.2263 29 1 12.7608 1.0186 -0.4135 30 1 13.5061 -1.3536 -0.4153 31 1 11.8335 -3.1446 -0.2111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339922160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = 37.660871 kcal Electronic energy + Delta-G solvation = -19251.671892 eV Core-core repulsion = 16045.414030 eV Total energy + Delta-G solvation = -3206.257862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48401 -41.00730 -39.37625 -36.87857 -36.15868 -33.84957 -33.42316 -31.73836 -29.88359 -27.89231 -25.68651 -24.68919 -24.00586 -22.44421 -21.12470 -20.55733 -19.49171 -18.29612 -18.11867 -17.01950 -16.99453 -16.80677 -16.51882 -16.34240 -15.63139 -15.56010 -15.18146 -14.85190 -14.63506 -14.45159 -14.19286 -13.90543 -13.10286 -12.94415 -12.58208 -12.51374 -12.49758 -12.04425 -11.64509 -10.94509 -10.90451 -10.72838 -10.42439 -10.38367 -10.36716 -9.84474 -8.72911 -8.54072 -6.10750 -0.39687 0.15101 0.29574 0.36463 0.75487 1.14892 1.25300 1.36560 1.38865 1.56966 2.14193 2.40356 2.88521 2.90759 3.14433 3.25983 3.68767 3.94682 4.17924 4.23129 4.33942 4.44435 4.52182 4.81515 4.83651 5.06856 5.34975 5.40375 5.44385 5.81929 5.88148 5.89152 6.40500 6.62497 6.75043 6.99979 7.26243 7.78320 8.62304 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.004113 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.053069 B = 6805.584937 C = 7919.044240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.246 1.246 7 C -0.334 4.334 8 H 0.067 0.933 9 N -0.560 5.560 10 C 0.507 3.493 11 O -0.620 6.620 12 C 0.038 3.962 13 C -0.265 4.265 14 S 0.278 5.722 15 C 0.285 3.715 16 N -0.603 5.603 17 C 0.349 3.651 18 C -0.204 4.204 19 C -0.034 4.034 20 C -0.200 4.200 21 C 0.135 3.865 22 N -0.561 5.561 23 N -0.539 5.539 24 H 0.285 0.715 25 H 0.393 0.607 26 H 0.181 0.819 27 H 0.437 0.563 28 H 0.158 0.842 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.476 4.435 -0.605 33.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.204 4.204 3 Si 0.776 3.224 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.170 1.170 7 C -0.464 4.464 8 H 0.085 0.915 9 N -0.197 5.197 10 C 0.293 3.707 11 O -0.507 6.507 12 C -0.093 4.093 13 C -0.409 4.409 14 S 0.526 5.474 15 C -0.087 4.087 16 N -0.236 5.236 17 C 0.117 3.883 18 C -0.228 4.228 19 C -0.059 4.059 20 C -0.222 4.222 21 C -0.020 4.020 22 N -0.279 5.279 23 N -0.264 5.264 24 H 0.095 0.905 25 H 0.229 0.771 26 H 0.198 0.802 27 H 0.279 0.721 28 H 0.176 0.824 29 H 0.190 0.810 30 H 0.187 0.813 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 32.963 3.108 -0.542 33.113 hybrid contribution -1.232 1.744 0.009 2.135 sum 31.731 4.852 -0.534 32.104 Atomic orbital electron populations 1.69764 1.07718 1.29739 1.48141 1.26047 0.96507 1.02381 0.95420 0.85473 0.79264 0.77295 0.80333 1.17767 1.18366 1.16975 1.19174 0.80858 0.95720 1.50600 0.91498 1.41938 1.06158 1.07560 1.64043 1.17355 0.85710 0.83880 0.83708 1.90618 1.69617 1.32304 1.58129 1.19606 0.93618 0.88263 1.07815 1.27854 1.01170 1.03110 1.08774 1.85262 0.96776 0.95729 1.69611 1.24224 0.89182 0.94475 1.00797 1.41178 1.01111 1.07074 1.74251 1.18539 0.82929 0.91300 0.95487 1.21611 0.93836 0.99227 1.08174 1.21863 0.94511 0.98297 0.91269 1.22382 1.02607 0.93068 1.04131 1.22950 0.85297 1.02001 0.91789 1.66215 1.20721 1.19776 1.21157 1.66461 1.04068 1.31074 1.24825 0.90506 0.77103 0.80191 0.72064 0.82398 0.81011 0.81342 0.79880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.15 13.96 21.67 0.30 -55.85 16 2 C 0.00 -0.14 5.50 84.93 0.47 0.33 16 3 Si 0.96 42.13 27.74 68.60 1.90 44.04 16 4 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 7 C -0.33 -21.13 10.16 84.07 0.85 -20.28 16 8 H 0.07 4.86 7.38 -2.91 -0.02 4.84 16 9 N -0.56 -31.25 5.08 -310.27 -1.58 -32.83 16 10 C 0.51 27.99 7.74 86.56 0.67 28.66 16 11 O -0.62 -38.57 16.24 -4.29 -0.07 -38.64 16 12 C 0.04 1.70 6.67 40.50 0.27 1.97 16 13 C -0.26 -9.81 10.84 67.12 0.73 -9.08 16 14 S 0.28 7.62 20.23 -56.49 -1.14 6.47 16 15 C 0.28 8.74 8.38 179.40 1.50 10.24 16 16 N -0.60 -13.52 5.53 -192.07 -1.06 -14.59 16 17 C 0.35 6.40 7.44 133.01 0.99 7.39 16 18 C -0.20 -2.29 9.94 22.50 0.22 -2.06 16 19 C -0.03 -0.22 10.17 22.44 0.23 0.00 16 20 C -0.20 -1.33 10.10 22.37 0.23 -1.11 16 21 C 0.13 1.54 11.17 84.63 0.95 2.48 16 22 N -0.56 -10.47 6.85 -193.15 -1.32 -11.79 16 23 N -0.54 -20.94 10.02 -187.33 -1.88 -22.81 16 24 H 0.29 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.39 19.73 5.23 -92.71 -0.49 19.24 16 26 H 0.18 6.48 8.01 -2.91 -0.02 6.46 16 27 H 0.44 8.00 8.82 -92.71 -0.82 7.18 16 28 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.17 0.02 8.06 -2.91 -0.02 0.00 16 30 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 31 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -83.97 294.47 2.11 -81.86 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.15 Total: 25.59 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 7.10 Total: 18.54 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -5.54 Total: -137.87 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.07 Total: -38.64 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.90 Total: 44.04 kcal Atomic # 16 Polarization: 7.62 SS G_CDS: -1.14 Total: 6.47 kcal Total: -83.97 2.11 -81.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.521 kcal (2) G-P(sol) polarization free energy of solvation -83.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds