Wall clock time and date at job start Tue Mar 31 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48503 * 109.47033 * 239.99650 * 3 2 1 5 5 H 1.48495 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47316 * 119.99776 * 3 2 1 7 7 C 1.38802 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00208 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99732 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47141 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47542 * 179.97438 * 11 10 9 13 13 S 1.81389 * 109.47383 * 180.02562 * 12 11 10 14 14 C 1.76198 * 103.00279 * 180.02562 * 13 12 11 15 15 C 1.38860 * 120.05691 * 0.27661 * 14 13 12 16 16 C 1.38152 * 119.96764 * 180.27875 * 15 14 13 17 17 C 1.38473 * 120.08776 * 359.44418 * 16 15 14 18 18 F 1.35103 * 119.93781 * 180.30411 * 17 16 15 19 19 C 1.38470 * 120.12470 * 0.28250 * 17 16 15 20 20 C 1.38279 * 120.02982 * 359.97438 * 19 17 16 21 21 F 1.35100 * 120.04482 * 180.02562 * 20 19 17 22 22 H 0.97000 * 119.99972 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47058 * 59.99615 * 10 9 7 24 24 H 1.08995 * 109.47020 * 299.99744 * 10 9 7 25 25 H 1.09008 * 109.46577 * 59.99978 * 11 10 9 26 26 H 1.09002 * 109.47194 * 300.00665 * 11 10 9 27 27 H 1.09007 * 109.46542 * 60.00280 * 12 11 10 28 28 H 1.09000 * 109.47098 * 300.00820 * 12 11 10 29 29 H 1.08003 * 120.02054 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.95857 * 179.72923 * 16 15 14 31 31 H 1.08003 * 119.99055 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3243 0.0012 12 6 3.1513 -6.3078 0.0005 13 16 2.5152 -8.0065 0.0005 14 6 3.9840 -8.9798 0.0005 15 6 5.2277 -8.3621 0.0063 16 6 6.3781 -9.1270 0.0005 17 6 6.2928 -10.5091 0.0005 18 9 7.4198 -11.2542 0.0010 19 6 5.0546 -11.1290 0.0004 20 6 3.8999 -10.3683 0.0009 21 9 2.6916 -10.9728 0.0014 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7313 0.8905 24 1 3.1244 -3.7314 -0.8894 25 1 1.3705 -5.4846 -0.8887 26 1 1.3709 -5.4841 0.8913 27 1 3.7605 -6.1475 0.8902 28 1 3.7594 -6.1478 -0.8898 29 1 5.2956 -7.2843 0.0113 30 1 7.3453 -8.6465 0.0006 31 1 4.9906 -12.2072 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341938801.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:33 Heat of formation + Delta-G solvation = -83.318771 kcal Electronic energy + Delta-G solvation = -16872.001470 eV Core-core repulsion = 13620.268470 eV Total energy + Delta-G solvation = -3251.732999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.34535 -49.28487 -39.02989 -34.55044 -32.48435 -31.56676 -30.77322 -27.29447 -25.55591 -23.65513 -23.40641 -21.51624 -18.64766 -17.81844 -17.55311 -17.48829 -16.36069 -16.13364 -15.65318 -15.38861 -15.37462 -14.85669 -14.75541 -14.50450 -14.21209 -13.44672 -13.17495 -13.02981 -12.70453 -12.46430 -12.00296 -11.91079 -11.56202 -11.10291 -10.94677 -10.72647 -10.71593 -10.37601 -10.00620 -9.66040 -9.46011 -9.10615 -8.40080 -7.63452 -6.60740 -6.28129 -3.99796 0.43372 0.56137 1.15672 2.15421 2.86617 3.17217 3.19618 3.24653 3.46379 3.47768 3.97513 4.13378 4.16333 4.41071 4.67526 4.82688 4.93708 5.08114 5.11397 5.29773 5.32600 5.39868 5.44721 5.50459 5.60769 5.62618 5.78985 6.11567 6.27035 6.34429 6.55222 7.54625 8.30507 9.17942 10.79957 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.033725 B = 0.002633 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.038258 B =10633.580502 C =11437.868598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.126 6.126 10 C -0.110 4.110 11 C -0.084 4.084 12 C -0.106 4.106 13 S -0.080 6.080 14 C -0.131 4.131 15 C -0.080 4.080 16 C -0.140 4.140 17 C 0.117 3.883 18 F -0.132 7.132 19 C -0.172 4.172 20 C 0.142 3.858 21 F -0.120 7.120 22 H 0.269 0.731 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -20.112 0.008 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.102 5.898 10 C -0.261 4.261 11 C -0.124 4.124 12 C -0.256 4.256 13 S 0.167 5.833 14 C -0.245 4.245 15 C -0.104 4.104 16 C -0.161 4.161 17 C 0.094 3.906 18 F -0.110 7.110 19 C -0.193 4.193 20 C 0.116 3.884 21 F -0.098 7.098 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.841 -20.481 0.008 22.307 hybrid contribution 3.268 1.365 -0.002 3.541 sum 12.108 -19.115 0.006 22.628 Atomic orbital electron populations 1.70006 1.05936 1.27571 1.46904 1.25020 0.95093 0.99127 0.94496 0.86211 0.79244 0.81147 0.78863 1.19909 1.20769 1.19901 1.22635 0.94483 0.90673 1.58948 0.90929 1.84704 1.08898 0.99336 1.96888 1.23255 1.03334 0.96293 1.03179 1.21052 0.95322 0.91754 1.04251 1.23953 1.03188 0.92646 1.05811 1.85949 1.05933 1.00679 1.90762 1.22079 0.99544 0.95331 1.07571 1.21004 0.89718 1.00789 0.98927 1.21135 1.00256 0.91713 1.02986 1.17241 0.81741 0.88959 1.02665 1.91535 1.49171 1.76564 1.93773 1.20930 0.90075 1.01689 1.06645 1.16654 0.80716 0.88457 1.02579 1.91563 1.41721 1.83130 1.93422 0.92149 0.91811 0.91807 0.90294 0.90284 0.89059 0.89059 0.83555 0.83622 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.48 9.50 30.94 0.29 -14.19 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.13 -3.19 21.44 -107.50 -2.30 -5.50 16 10 C -0.11 -2.05 5.67 37.16 0.21 -1.84 16 11 C -0.08 -1.25 5.22 -26.73 -0.14 -1.39 16 12 C -0.11 -1.22 4.33 37.16 0.16 -1.06 16 13 S -0.08 -0.97 21.52 -107.50 -2.31 -3.28 16 14 C -0.13 -1.42 6.11 -39.03 -0.24 -1.66 16 15 C -0.08 -0.72 9.36 -39.38 -0.37 -1.09 16 16 C -0.14 -1.13 10.02 -39.53 -0.40 -1.53 16 17 C 0.12 1.03 7.30 -39.41 -0.29 0.74 16 18 F -0.13 -1.20 17.26 2.25 0.04 -1.17 16 19 C -0.17 -1.54 10.00 -39.48 -0.39 -1.93 16 20 C 0.14 1.51 7.28 -39.25 -0.29 1.23 16 21 F -0.12 -1.41 16.76 2.25 0.04 -1.37 16 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 24 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 25 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.09 0.95 7.73 -51.92 -0.40 0.55 16 28 H 0.09 0.95 7.76 -51.92 -0.40 0.55 16 29 H 0.15 1.12 5.87 -52.48 -0.31 0.81 16 30 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 307.52 15.07 4.63 4.63 Total: -1.00 -30.17 307.52 -8.93 -39.10 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -3.19 Total: -2.85 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -1.54 Total: -20.80 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.73 Total: -24.81 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -4.62 Total: -8.78 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.17 -8.93 -39.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341938801.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.222 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds