Wall clock time and date at job start Tue Mar 31 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48503 * 109.47033 * 239.99650 * 3 2 1 5 5 H 1.48495 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47316 * 119.99776 * 3 2 1 7 7 C 1.38802 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00208 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99732 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47141 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47542 * 179.97438 * 11 10 9 13 13 S 1.81389 * 109.47383 * 180.02562 * 12 11 10 14 14 C 1.76198 * 103.00279 * 180.02562 * 13 12 11 15 15 C 1.38860 * 120.05691 * 0.27661 * 14 13 12 16 16 C 1.38152 * 119.96764 * 180.27875 * 15 14 13 17 17 C 1.38473 * 120.08776 * 359.44418 * 16 15 14 18 18 F 1.35103 * 119.93781 * 180.30411 * 17 16 15 19 19 C 1.38470 * 120.12470 * 0.28250 * 17 16 15 20 20 C 1.38279 * 120.02982 * 359.97438 * 19 17 16 21 21 F 1.35100 * 120.04482 * 180.02562 * 20 19 17 22 22 H 0.97000 * 119.99972 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47058 * 59.99615 * 10 9 7 24 24 H 1.08995 * 109.47020 * 299.99744 * 10 9 7 25 25 H 1.09008 * 109.46577 * 59.99978 * 11 10 9 26 26 H 1.09002 * 109.47194 * 300.00665 * 11 10 9 27 27 H 1.09007 * 109.46542 * 60.00280 * 12 11 10 28 28 H 1.09000 * 109.47098 * 300.00820 * 12 11 10 29 29 H 1.08003 * 120.02054 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.95857 * 179.72923 * 16 15 14 31 31 H 1.08003 * 119.99055 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3243 0.0012 12 6 3.1513 -6.3078 0.0005 13 16 2.5152 -8.0065 0.0005 14 6 3.9840 -8.9798 0.0005 15 6 5.2277 -8.3621 0.0063 16 6 6.3781 -9.1270 0.0005 17 6 6.2928 -10.5091 0.0005 18 9 7.4198 -11.2542 0.0010 19 6 5.0546 -11.1290 0.0004 20 6 3.8999 -10.3683 0.0009 21 9 2.6916 -10.9728 0.0014 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7313 0.8905 24 1 3.1244 -3.7314 -0.8894 25 1 1.3705 -5.4846 -0.8887 26 1 1.3709 -5.4841 0.8913 27 1 3.7605 -6.1475 0.8902 28 1 3.7594 -6.1478 -0.8898 29 1 5.2956 -7.2843 0.0113 30 1 7.3453 -8.6465 0.0006 31 1 4.9906 -12.2072 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341938801.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:33 Heat of formation + Delta-G solvation = -98.098143 kcal Electronic energy + Delta-G solvation = -16872.642351 eV Core-core repulsion = 13620.268470 eV Total energy + Delta-G solvation = -3252.373881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.031 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.11577 -50.03928 -39.73783 -35.77962 -34.58806 -32.28741 -31.48409 -28.60897 -27.58412 -24.38700 -24.20485 -22.71798 -19.60809 -19.36695 -18.62662 -18.22672 -17.13007 -16.91070 -16.88403 -16.57274 -16.48359 -16.38023 -15.88894 -15.34546 -15.28284 -14.80031 -14.26397 -14.17061 -13.72131 -13.36057 -13.32183 -13.25030 -12.90364 -12.73717 -12.48722 -12.35370 -11.99251 -11.48694 -11.26256 -11.12459 -10.76451 -10.32105 -10.16126 -8.66875 -8.51449 -8.36511 -6.13116 -0.29656 -0.12936 0.25681 1.26586 1.33608 1.42074 1.49293 1.76107 2.16696 2.29040 2.74559 2.98190 3.26098 3.31212 3.46994 3.78984 3.83167 3.90410 4.00558 4.18707 4.34018 4.43852 4.56108 4.64271 4.73759 4.75217 4.86270 4.92038 5.00741 5.18858 5.40843 5.58682 6.18811 7.05917 8.72579 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.033725 B = 0.002633 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.038258 B =10633.580502 C =11437.868598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.014 3.986 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.077 0.923 9 S -0.201 6.201 10 C -0.084 4.084 11 C -0.075 4.075 12 C -0.092 4.092 13 S -0.113 6.113 14 C -0.140 4.140 15 C -0.079 4.079 16 C -0.131 4.131 17 C 0.114 3.886 18 F -0.133 7.133 19 C -0.169 4.169 20 C 0.123 3.877 21 F -0.132 7.132 22 H 0.271 0.729 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.002 -20.228 0.010 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.684 4.684 8 H 0.095 0.905 9 S 0.028 5.972 10 C -0.234 4.234 11 C -0.115 4.115 12 C -0.242 4.242 13 S 0.133 5.867 14 C -0.254 4.254 15 C -0.103 4.103 16 C -0.152 4.152 17 C 0.092 3.908 18 F -0.111 7.111 19 C -0.189 4.189 20 C 0.098 3.902 21 F -0.110 7.110 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.180 0.820 30 H 0.190 0.810 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.456 -20.616 0.010 23.585 hybrid contribution 2.528 1.245 -0.002 2.818 sum 13.984 -19.371 0.008 23.892 Atomic orbital electron populations 1.70153 1.07751 1.28605 1.47997 1.26078 0.96003 1.03184 0.93813 0.85072 0.77914 0.76069 0.79416 1.18831 1.20273 1.18819 1.23015 0.94844 0.91771 1.58813 0.90497 1.84758 1.14018 1.01347 1.97079 1.23155 1.00330 0.96077 1.03862 1.20879 0.96517 0.90420 1.03684 1.23760 1.01653 0.91241 1.07521 1.86059 1.07721 1.01477 1.91481 1.22084 0.99334 0.95132 1.08827 1.21220 0.89118 1.01674 0.98289 1.21419 1.01116 0.91343 1.01273 1.17363 0.81578 0.89402 1.02492 1.91540 1.49140 1.76675 1.93761 1.21082 0.89607 1.02550 1.05710 1.16863 0.80826 0.88704 1.03835 1.91530 1.42494 1.83330 1.93695 0.92009 0.90990 0.90990 0.90984 0.90969 0.87346 0.87360 0.81960 0.81015 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.24 13.22 21.65 0.29 -53.95 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.54 -30.00 9.50 67.95 0.65 -29.35 16 8 H 0.08 4.07 7.80 -2.91 -0.02 4.05 16 9 S -0.20 -10.30 21.44 -56.49 -1.21 -11.51 16 10 C -0.08 -3.02 5.67 71.98 0.41 -2.61 16 11 C -0.08 -2.16 5.22 30.59 0.16 -2.00 16 12 C -0.09 -1.92 4.33 71.98 0.31 -1.61 16 13 S -0.11 -2.63 21.52 -56.49 -1.22 -3.85 16 14 C -0.14 -2.81 6.11 22.63 0.14 -2.67 16 15 C -0.08 -1.20 9.36 22.40 0.21 -0.99 16 16 C -0.13 -1.70 10.02 22.31 0.22 -1.48 16 17 C 0.11 1.73 7.30 22.38 0.16 1.89 16 18 F -0.13 -2.10 17.26 44.97 0.78 -1.32 16 19 C -0.17 -2.72 10.00 22.33 0.22 -2.50 16 20 C 0.12 2.51 7.28 22.49 0.16 2.67 16 21 F -0.13 -3.07 16.76 44.97 0.75 -2.32 16 22 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 23 H 0.07 2.49 8.14 -2.40 -0.02 2.47 16 24 H 0.07 2.49 8.14 -2.40 -0.02 2.47 16 25 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.11 1.92 7.73 -2.39 -0.02 1.90 16 28 H 0.11 1.92 7.76 -2.39 -0.02 1.90 16 29 H 0.16 1.90 5.87 -2.91 -0.02 1.88 16 30 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -65.77 307.52 5.68 -60.09 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.15 Total: 5.40 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 3.11 Total: -37.40 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.29 Total: -53.95 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 1.53 Total: -3.64 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -12.94 SS G_CDS: -2.43 Total: -15.36 kcal Total: -65.77 5.68 -60.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341938801.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.007 kcal (2) G-P(sol) polarization free energy of solvation -65.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds