Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99874 * 2 1 4 4 H 1.48503 * 109.47359 * 269.99843 * 3 2 1 5 5 H 1.48501 * 109.47327 * 29.99973 * 3 2 1 6 6 H 1.48497 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37882 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47130 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47387 * 179.97438 * 11 10 9 13 13 O 1.42109 * 110.53807 * 68.37945 * 12 11 10 14 14 O 1.42098 * 110.54422 * 291.62974 * 12 11 10 15 15 N 1.65602 * 104.44973 * 179.97438 * 12 11 10 16 16 C 1.46498 * 119.99612 * 65.28269 * 15 12 11 17 17 C 1.50703 * 109.47212 * 164.72359 * 16 15 12 18 18 N 1.29021 * 124.91904 * 89.68981 * 17 16 15 19 19 C 1.31780 * 117.12561 * 179.81733 * 18 17 16 20 20 C 1.33636 * 114.50031 * 0.47343 * 19 18 17 21 21 S 1.70982 * 124.91374 * 269.99781 * 17 16 15 22 22 H 0.96993 * 120.00008 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47466 * 59.99567 * 9 7 2 24 24 H 1.09000 * 109.46929 * 299.99428 * 9 7 2 25 25 H 1.08994 * 109.46946 * 60.00080 * 10 9 7 26 26 H 1.08993 * 109.47285 * 299.99580 * 10 9 7 27 27 H 1.09009 * 109.46641 * 59.99922 * 11 10 9 28 28 H 1.09001 * 109.47327 * 300.00746 * 11 10 9 29 29 H 0.97001 * 119.99942 * 244.99793 * 15 12 11 30 30 H 1.08996 * 109.46882 * 284.72133 * 16 15 12 31 31 H 1.08999 * 109.47498 * 44.72066 * 16 15 12 32 32 H 1.08000 * 122.75244 * 180.22712 * 19 18 17 33 33 H 1.08000 * 126.04197 * 179.72265 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 16 2.6592 -6.3659 0.0004 13 8 3.3567 -6.4261 1.2370 14 8 3.3551 -6.4263 -1.2370 15 7 1.7088 -7.7220 0.0019 16 6 0.8528 -8.0178 -1.1496 17 6 0.3916 -9.4507 -1.0779 18 7 -0.6808 -9.8526 -0.4838 19 6 -0.9393 -11.1443 -0.5192 20 6 -0.0293 -11.8739 -1.1715 21 16 1.2179 -10.7802 -1.7657 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6044 -0.8894 27 1 0.8534 -5.0451 -0.8887 28 1 0.8540 -5.0446 0.8913 29 1 1.7220 -8.3227 0.7634 30 1 -0.0135 -7.3563 -1.1377 31 1 1.4156 -7.8629 -2.0701 32 1 -1.8128 -11.5783 -0.0555 33 1 -0.0537 -12.9447 -1.3097 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344960498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = -38.972555 kcal Electronic energy + Delta-G solvation = -18054.610734 eV Core-core repulsion = 14948.180997 eV Total energy + Delta-G solvation = -3106.429737 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04197 -36.98875 -35.89438 -35.61932 -34.68242 -32.19299 -30.84326 -27.82410 -27.41745 -24.07708 -23.73312 -20.71802 -20.37862 -19.37349 -18.66650 -17.45554 -16.75330 -16.48298 -15.89422 -15.65603 -15.22731 -14.67948 -14.52484 -14.46615 -14.12212 -13.42735 -13.20971 -12.59784 -12.28937 -12.02556 -11.98890 -11.88313 -11.85240 -11.80093 -11.25850 -10.92366 -10.86219 -10.46013 -10.11529 -9.95801 -9.83651 -9.78571 -9.38146 -9.32209 -9.10031 -8.40649 -6.05583 -4.08705 0.15109 0.47992 0.97029 1.37431 2.37439 2.86295 3.30712 3.36929 3.40934 3.64100 3.88490 4.34927 4.42381 4.47831 4.78911 4.96512 5.03607 5.13329 5.14785 5.19383 5.30905 5.46911 5.74233 5.87699 6.25429 6.43656 6.72284 6.86536 7.33145 7.57025 7.66782 7.92417 8.32694 8.97605 9.56053 11.05636 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.034268 B = 0.003026 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.891652 B = 9251.834077 C = 9693.566127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.607 4.607 12 S 2.601 3.399 13 O -0.958 6.958 14 O -0.960 6.960 15 N -1.121 6.121 16 C 0.193 3.807 17 C 0.033 3.967 18 N -0.458 5.458 19 C 0.037 3.963 20 C -0.259 4.259 21 S 0.150 5.850 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.418 0.582 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.178 0.822 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 -24.204 -3.170 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.739 4.739 12 S 2.697 3.303 13 O -0.948 6.948 14 O -0.950 6.950 15 N -0.880 5.880 16 C 0.064 3.936 17 C -0.245 4.245 18 N -0.174 5.174 19 C -0.115 4.115 20 C -0.399 4.399 21 S 0.403 5.597 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.252 0.748 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.195 0.805 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.274 -23.706 -3.650 23.987 hybrid contribution -1.235 0.319 0.764 1.487 sum -0.960 -23.387 -2.887 23.584 Atomic orbital electron populations 1.69955 1.06089 1.26793 1.50568 1.25022 0.94885 0.99373 0.95103 0.86554 0.79876 0.83184 0.78183 1.20569 1.21183 1.19748 1.21253 0.93256 0.90890 1.51086 0.92359 1.19066 0.93526 0.90415 0.97795 1.21515 0.99412 0.91596 1.02048 1.30540 1.16268 1.15597 1.11525 1.05390 0.75552 0.75079 0.74316 1.93593 1.70440 1.85722 1.45069 1.93572 1.70174 1.85644 1.45562 1.55822 1.62071 1.43082 1.26976 1.19784 0.95380 0.88411 0.90064 1.26957 0.95190 1.01103 1.01281 1.66289 1.16797 1.16052 1.18233 1.21863 1.01213 0.87508 1.00908 1.27250 0.99358 1.05359 1.07911 1.84265 1.25236 0.98876 1.51312 0.92886 0.96077 0.96063 0.91516 0.91474 0.85341 0.85011 0.74826 0.88239 0.87819 0.80489 0.80365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.76 4.97 -27.89 -0.14 0.62 16 10 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 11 C -0.61 -8.93 6.08 37.16 0.23 -8.71 16 12 S 2.60 36.24 5.46 -107.50 -0.59 35.66 16 13 O -0.96 -16.35 18.08 -57.54 -1.04 -17.39 16 14 O -0.96 -15.75 17.49 -57.54 -1.01 -16.75 16 15 N -1.12 -11.91 5.88 -11.66 -0.07 -11.98 16 16 C 0.19 1.84 6.72 -5.19 -0.03 1.81 16 17 C 0.03 0.33 6.78 -13.46 -0.09 0.24 16 18 N -0.46 -4.82 10.54 -11.86 -0.13 -4.95 16 19 C 0.04 0.30 11.35 -19.19 -0.22 0.08 16 20 C -0.26 -1.75 11.37 29.12 0.33 -1.42 16 21 S 0.15 1.20 23.18 -107.50 -2.49 -1.30 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 29 H 0.42 4.02 8.61 -34.47 -0.30 3.72 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.89 7.68 -51.93 -0.40 0.49 16 32 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -35.55 317.21 -9.34 -44.89 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.04 Total: -0.56 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -0.47 Total: -23.13 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.54 Total: -42.71 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -2.05 Total: -34.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 37.44 SS G_CDS: -3.08 Total: 34.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.55 -9.34 -44.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344960498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.918 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds