Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99874 * 2 1 4 4 H 1.48503 * 109.47359 * 269.99843 * 3 2 1 5 5 H 1.48501 * 109.47327 * 29.99973 * 3 2 1 6 6 H 1.48497 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37882 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47130 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47387 * 179.97438 * 11 10 9 13 13 O 1.42109 * 110.53807 * 68.37945 * 12 11 10 14 14 O 1.42098 * 110.54422 * 291.62974 * 12 11 10 15 15 N 1.65602 * 104.44973 * 179.97438 * 12 11 10 16 16 C 1.46498 * 119.99612 * 65.28269 * 15 12 11 17 17 C 1.50703 * 109.47212 * 164.72359 * 16 15 12 18 18 N 1.29021 * 124.91904 * 89.68981 * 17 16 15 19 19 C 1.31780 * 117.12561 * 179.81733 * 18 17 16 20 20 C 1.33636 * 114.50031 * 0.47343 * 19 18 17 21 21 S 1.70982 * 124.91374 * 269.99781 * 17 16 15 22 22 H 0.96993 * 120.00008 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47466 * 59.99567 * 9 7 2 24 24 H 1.09000 * 109.46929 * 299.99428 * 9 7 2 25 25 H 1.08994 * 109.46946 * 60.00080 * 10 9 7 26 26 H 1.08993 * 109.47285 * 299.99580 * 10 9 7 27 27 H 1.09009 * 109.46641 * 59.99922 * 11 10 9 28 28 H 1.09001 * 109.47327 * 300.00746 * 11 10 9 29 29 H 0.97001 * 119.99942 * 244.99793 * 15 12 11 30 30 H 1.08996 * 109.46882 * 284.72133 * 16 15 12 31 31 H 1.08999 * 109.47498 * 44.72066 * 16 15 12 32 32 H 1.08000 * 122.75244 * 180.22712 * 19 18 17 33 33 H 1.08000 * 126.04197 * 179.72265 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 16 2.6592 -6.3659 0.0004 13 8 3.3567 -6.4261 1.2370 14 8 3.3551 -6.4263 -1.2370 15 7 1.7088 -7.7220 0.0019 16 6 0.8528 -8.0178 -1.1496 17 6 0.3916 -9.4507 -1.0779 18 7 -0.6808 -9.8526 -0.4838 19 6 -0.9393 -11.1443 -0.5192 20 6 -0.0293 -11.8739 -1.1715 21 16 1.2179 -10.7802 -1.7657 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6044 -0.8894 27 1 0.8534 -5.0451 -0.8887 28 1 0.8540 -5.0446 0.8913 29 1 1.7220 -8.3227 0.7634 30 1 -0.0135 -7.3563 -1.1377 31 1 1.4156 -7.8629 -2.0701 32 1 -1.8128 -11.5783 -0.0555 33 1 -0.0537 -12.9447 -1.3097 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344960498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -66.355615 kcal Electronic energy + Delta-G solvation = -18055.798153 eV Core-core repulsion = 14948.180997 eV Total energy + Delta-G solvation = -3107.617155 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67419 -38.23332 -37.10411 -36.50385 -36.44789 -34.15047 -31.50986 -29.64447 -28.12758 -25.61329 -24.72947 -22.41969 -21.01663 -20.46351 -19.43165 -18.67437 -18.40017 -17.54859 -17.17085 -16.56880 -16.43701 -16.23740 -15.62573 -15.32204 -15.13746 -14.48135 -14.19080 -14.07974 -13.81737 -13.49810 -13.22213 -13.15063 -13.09953 -12.94619 -12.74502 -12.61407 -12.41902 -12.15398 -11.72303 -11.37301 -11.16672 -10.77338 -10.56245 -10.46091 -10.42240 -9.95273 -8.21618 -6.32433 -0.83728 -0.30888 0.37334 0.78218 1.41148 1.41781 1.53143 1.61131 1.97886 2.40750 2.72258 2.98838 3.12089 3.25720 3.71403 3.85008 3.95057 4.32968 4.36598 4.41448 4.45259 4.55834 4.61056 4.69785 4.99351 5.09370 5.18918 5.47446 5.65233 5.81234 5.89591 6.21106 6.71517 6.83700 7.36907 8.89885 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.034268 B = 0.003026 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.891652 B = 9251.834077 C = 9693.566127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.030 3.970 10 C -0.107 4.107 11 C -0.609 4.609 12 S 2.636 3.364 13 O -0.988 6.988 14 O -0.982 6.982 15 N -1.108 6.108 16 C 0.183 3.817 17 C 0.012 3.988 18 N -0.482 5.482 19 C 0.016 3.984 20 C -0.242 4.242 21 S 0.157 5.843 22 H 0.265 0.735 23 H 0.005 0.995 24 H 0.001 0.999 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.425 0.575 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.198 0.802 33 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -25.449 -3.506 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.731 3.269 13 O -0.979 6.979 14 O -0.971 6.971 15 N -0.869 5.869 16 C 0.055 3.945 17 C -0.266 4.266 18 N -0.199 5.199 19 C -0.135 4.135 20 C -0.381 4.381 21 S 0.410 5.590 22 H 0.073 0.927 23 H 0.023 0.977 24 H 0.020 0.980 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.168 0.832 28 H 0.164 0.836 29 H 0.260 0.740 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.215 0.785 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.554 -24.949 -3.983 25.271 hybrid contribution -1.380 0.572 0.845 1.716 sum -0.826 -24.378 -3.138 24.593 Atomic orbital electron populations 1.70070 1.07643 1.27868 1.51455 1.25936 0.95800 1.03239 0.94639 0.85482 0.78691 0.78546 0.78573 1.19662 1.20662 1.18908 1.21756 0.93774 0.92527 1.50916 0.92091 1.18969 0.94057 0.91846 0.95958 1.21324 0.98679 0.92359 1.02273 1.30508 1.16627 1.13458 1.13450 1.04143 0.74880 0.74910 0.72953 1.93549 1.71567 1.86310 1.46427 1.93541 1.70995 1.86109 1.46496 1.55426 1.61915 1.41748 1.27817 1.20009 0.95693 0.89185 0.89662 1.26895 0.95776 1.01445 1.02521 1.66281 1.17330 1.17497 1.18761 1.22242 1.02447 0.86988 1.01792 1.27630 0.97907 1.06573 1.05996 1.84233 1.25330 0.98569 1.50883 0.92666 0.97691 0.98015 0.91598 0.91123 0.83187 0.83635 0.73974 0.87096 0.86959 0.78528 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 0.11 5.46 84.66 0.46 0.58 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.23 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.53 4.97 29.85 0.15 1.68 16 10 C -0.11 -4.24 5.16 30.60 0.16 -4.08 16 11 C -0.61 -17.42 6.08 71.98 0.44 -16.98 16 12 S 2.64 70.88 5.46 -56.49 -0.31 70.57 16 13 O -0.99 -33.03 18.08 -127.65 -2.31 -35.34 16 14 O -0.98 -31.18 17.49 -127.65 -2.23 -33.41 16 15 N -1.11 -22.11 5.88 -190.79 -1.12 -23.23 16 16 C 0.18 3.25 6.72 85.63 0.58 3.83 16 17 C 0.01 0.21 6.78 88.52 0.60 0.81 16 18 N -0.48 -9.51 10.54 -191.45 -2.02 -11.53 16 19 C 0.02 0.23 11.35 83.66 0.95 1.18 16 20 C -0.24 -2.64 11.37 66.78 0.76 -1.89 16 21 S 0.16 2.23 23.18 -56.49 -1.31 0.92 16 22 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 23 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 28 H 0.15 3.75 8.14 -2.39 -0.02 3.74 16 29 H 0.42 7.63 8.61 -96.74 -0.83 6.80 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.78 7.68 -2.39 -0.02 1.76 16 32 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -75.94 317.21 -2.37 -78.31 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.29 Total: 8.95 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 4.32 Total: -45.86 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.85 Total: -90.29 kcal Atomic # 8 Polarization: -64.22 SS G_CDS: -4.54 Total: -68.76 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 73.11 SS G_CDS: -1.62 Total: 71.49 kcal Total: -75.94 -2.37 -78.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344960498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.957 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds