Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.47023 * 2 1 4 4 N 1.29026 * 124.91499 * 90.02467 * 3 2 1 5 5 C 1.31781 * 117.12417 * 180.02562 * 4 3 2 6 6 C 1.33644 * 114.49886 * 359.97438 * 5 4 3 7 7 S 1.76204 * 126.03393 * 179.73717 * 6 5 4 8 8 O 1.42102 * 106.40229 * 203.53990 * 7 6 5 9 9 O 1.42097 * 106.40751 * 336.46369 * 7 6 5 10 10 N 1.65603 * 107.21593 * 90.00581 * 7 6 5 11 11 C 1.46499 * 119.99908 * 64.99922 * 10 7 6 12 12 C 1.53005 * 109.47061 * 165.00185 * 11 10 7 13 13 C 1.50696 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00320 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99742 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00209 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47244 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47355 * 120.00289 * 17 15 13 20 20 H 1.48495 * 109.47368 * 240.00419 * 17 15 13 21 21 S 1.70976 * 124.91718 * 270.02543 * 3 2 1 22 22 H 1.09003 * 109.47318 * 60.00174 * 1 2 3 23 23 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47362 * 300.00010 * 1 2 3 25 25 H 1.08996 * 109.47638 * 240.00353 * 2 1 3 26 26 H 1.09003 * 109.47318 * 119.99826 * 2 1 3 27 27 H 1.07999 * 122.75333 * 179.97438 * 5 4 3 28 28 H 0.96995 * 119.99739 * 244.99927 * 10 7 6 29 29 H 1.09004 * 109.46869 * 284.99833 * 11 10 7 30 30 H 1.08993 * 109.47595 * 44.99623 * 11 10 7 31 31 H 1.08991 * 109.46818 * 299.99707 * 12 11 10 32 32 H 1.08998 * 109.46858 * 59.99800 * 12 11 10 33 33 H 0.97000 * 120.00324 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2788 2.1170 1.0580 5 6 2.7135 3.3482 0.8794 6 6 2.8411 3.7106 -0.4006 7 16 3.3883 5.2807 -0.9838 8 8 2.8640 5.4262 -2.2965 9 8 3.1337 6.2083 0.0621 10 7 5.0344 5.1973 -1.1444 11 6 5.6292 4.2922 -2.1309 12 6 7.0978 4.6647 -2.3447 13 6 7.7097 3.7331 -3.3589 14 1 7.1111 2.9537 -3.8067 15 6 9.0337 3.8766 -3.7161 16 7 9.7626 4.8261 -3.1713 17 14 9.7925 2.7216 -4.9728 18 1 8.7694 1.7477 -5.4313 19 1 10.2834 3.5066 -6.1338 20 1 10.9278 1.9923 -4.3528 21 16 2.3579 2.3438 -1.4020 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.9474 4.0101 1.7001 28 1 5.6047 5.7478 -0.5854 29 1 5.5637 3.2662 -1.7686 30 1 5.0912 4.3791 -3.0748 31 1 7.1633 5.6905 -2.7069 32 1 7.6358 4.5776 -1.4007 33 1 10.6941 4.9268 -3.4223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359189204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = -49.154965 kcal Electronic energy + Delta-G solvation = -18443.516071 eV Core-core repulsion = 15336.644792 eV Total energy + Delta-G solvation = -3106.871279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96103 -37.08113 -35.74581 -35.47771 -34.42278 -32.78907 -30.03403 -29.19698 -26.09236 -24.54938 -23.21513 -21.34695 -20.93587 -19.04922 -18.56165 -17.42552 -16.86564 -16.32041 -15.68873 -15.17664 -15.00007 -14.60778 -14.40843 -14.14521 -13.98768 -13.78673 -12.79450 -12.61876 -12.20238 -12.06869 -11.94965 -11.87134 -11.83716 -11.76071 -11.38280 -11.33523 -11.15009 -10.65096 -10.55076 -9.95322 -9.88968 -9.64496 -9.29884 -9.24003 -9.01065 -8.45258 -6.11637 -4.15288 0.02463 0.52252 1.04292 1.39239 2.40670 3.23405 3.25816 3.33997 3.37546 3.71692 3.83306 4.37862 4.52281 4.57802 4.75594 4.77901 5.17138 5.18697 5.25412 5.40505 5.51372 5.67687 5.71302 5.81593 6.10703 6.38543 6.64672 7.30872 7.32087 7.51474 7.60017 7.86468 8.23676 8.90576 9.49612 10.99807 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004596 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.655671 B = 6091.303780 C = 7186.470140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C 0.070 3.930 4 N -0.491 5.491 5 C 0.180 3.820 6 C -0.836 4.836 7 S 2.722 3.278 8 O -0.952 6.952 9 O -0.961 6.961 10 N -1.105 6.105 11 C 0.116 3.884 12 C 0.018 3.982 13 C -0.524 4.524 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 S 0.251 5.749 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.190 0.810 28 H 0.419 0.581 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.362 -7.741 6.539 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.205 4.205 4 N -0.207 5.207 5 C 0.021 3.979 6 C -1.039 5.039 7 S 2.805 3.195 8 O -0.941 6.941 9 O -0.951 6.951 10 N -0.868 5.868 11 C -0.008 4.008 12 C -0.021 4.021 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 S 0.509 5.491 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.206 0.794 28 H 0.255 0.745 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.022 -7.598 5.640 19.475 hybrid contribution 1.186 -0.452 0.637 1.421 sum -15.835 -8.050 6.277 18.841 Atomic orbital electron populations 1.21792 0.92966 1.02978 1.02933 1.20388 0.97092 0.87098 1.05058 1.27798 0.98220 1.01890 0.92609 1.66414 1.16451 1.06072 1.31737 1.21603 0.90672 0.91095 0.94531 1.37492 1.29767 1.29809 1.06868 1.01231 0.72851 0.71872 0.73594 1.93599 1.78540 1.84572 1.37432 1.93570 1.84632 1.58666 1.58251 1.55489 1.24668 1.55808 1.50863 1.21709 0.99276 0.90699 0.89150 1.19291 0.87095 0.97948 0.97737 1.21109 0.95766 1.15693 1.23789 0.92177 1.25001 0.97232 0.95554 0.96471 1.69962 1.08034 1.32028 1.43031 0.86477 0.79212 0.80781 0.81180 1.19604 1.20887 1.20978 1.83977 1.55547 1.00389 1.09162 0.92125 0.90944 0.91779 0.88956 0.88189 0.79353 0.74544 0.93067 0.91155 0.95421 0.95712 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.15 0.37 -0.59 16 2 C -0.06 -0.43 6.52 -27.88 -0.18 -0.61 16 3 C 0.07 0.81 6.64 -13.45 -0.09 0.72 16 4 N -0.49 -6.50 10.54 -11.86 -0.13 -6.62 16 5 C 0.18 2.40 11.07 -19.18 -0.21 2.18 16 6 C -0.84 -11.86 6.63 29.12 0.19 -11.66 16 7 S 2.72 42.99 5.89 -107.50 -0.63 42.36 16 8 O -0.95 -17.44 17.42 -57.17 -1.00 -18.43 16 9 O -0.96 -16.26 17.84 -57.17 -1.02 -17.28 16 10 N -1.11 -18.15 6.00 -10.61 -0.06 -18.21 16 11 C 0.12 2.25 6.16 -4.04 -0.02 2.23 16 12 C 0.02 0.44 5.12 -27.88 -0.14 0.29 16 13 C -0.52 -14.05 9.11 -34.44 -0.31 -14.37 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 17 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 S 0.25 3.15 23.11 -107.50 -2.48 0.67 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.19 2.10 8.06 -52.49 -0.42 1.67 16 28 H 0.42 6.28 8.65 -34.47 -0.30 5.98 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.37 7.75 -51.93 -0.40 0.96 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 317.19 15.07 4.78 4.78 Total: -1.00 -32.99 317.19 -9.37 -42.37 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.05 Total: -0.15 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -0.50 Total: -20.27 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.55 Total: -49.87 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -2.02 Total: -35.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 46.14 SS G_CDS: -3.12 Total: 43.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.99 -9.37 -42.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359189204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.786 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds