Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.47023 * 2 1 4 4 N 1.29026 * 124.91499 * 90.02467 * 3 2 1 5 5 C 1.31781 * 117.12417 * 180.02562 * 4 3 2 6 6 C 1.33644 * 114.49886 * 359.97438 * 5 4 3 7 7 S 1.76204 * 126.03393 * 179.73717 * 6 5 4 8 8 O 1.42102 * 106.40229 * 203.53990 * 7 6 5 9 9 O 1.42097 * 106.40751 * 336.46369 * 7 6 5 10 10 N 1.65603 * 107.21593 * 90.00581 * 7 6 5 11 11 C 1.46499 * 119.99908 * 64.99922 * 10 7 6 12 12 C 1.53005 * 109.47061 * 165.00185 * 11 10 7 13 13 C 1.50696 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00320 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99742 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00209 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47244 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47355 * 120.00289 * 17 15 13 20 20 H 1.48495 * 109.47368 * 240.00419 * 17 15 13 21 21 S 1.70976 * 124.91718 * 270.02543 * 3 2 1 22 22 H 1.09003 * 109.47318 * 60.00174 * 1 2 3 23 23 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47362 * 300.00010 * 1 2 3 25 25 H 1.08996 * 109.47638 * 240.00353 * 2 1 3 26 26 H 1.09003 * 109.47318 * 119.99826 * 2 1 3 27 27 H 1.07999 * 122.75333 * 179.97438 * 5 4 3 28 28 H 0.96995 * 119.99739 * 244.99927 * 10 7 6 29 29 H 1.09004 * 109.46869 * 284.99833 * 11 10 7 30 30 H 1.08993 * 109.47595 * 44.99623 * 11 10 7 31 31 H 1.08991 * 109.46818 * 299.99707 * 12 11 10 32 32 H 1.08998 * 109.46858 * 59.99800 * 12 11 10 33 33 H 0.97000 * 120.00324 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2788 2.1170 1.0580 5 6 2.7135 3.3482 0.8794 6 6 2.8411 3.7106 -0.4006 7 16 3.3883 5.2807 -0.9838 8 8 2.8640 5.4262 -2.2965 9 8 3.1337 6.2083 0.0621 10 7 5.0344 5.1973 -1.1444 11 6 5.6292 4.2922 -2.1309 12 6 7.0978 4.6647 -2.3447 13 6 7.7097 3.7331 -3.3589 14 1 7.1111 2.9537 -3.8067 15 6 9.0337 3.8766 -3.7161 16 7 9.7626 4.8261 -3.1713 17 14 9.7925 2.7216 -4.9728 18 1 8.7694 1.7477 -5.4313 19 1 10.2834 3.5066 -6.1338 20 1 10.9278 1.9923 -4.3528 21 16 2.3579 2.3438 -1.4020 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.9474 4.0101 1.7001 28 1 5.6047 5.7478 -0.5854 29 1 5.5637 3.2662 -1.7686 30 1 5.0912 4.3791 -3.0748 31 1 7.1633 5.6905 -2.7069 32 1 7.6358 4.5776 -1.4007 33 1 10.6941 4.9268 -3.4223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359189204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = -73.918458 kcal Electronic energy + Delta-G solvation = -18444.589897 eV Core-core repulsion = 15336.644792 eV Total energy + Delta-G solvation = -3107.945105 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93855 -38.43787 -37.11771 -37.06376 -35.11419 -34.74388 -31.04533 -30.96163 -26.93754 -26.44660 -23.98406 -23.04382 -22.08091 -20.30183 -19.55455 -18.84286 -18.20355 -18.02462 -17.03936 -16.48496 -16.13467 -15.93067 -15.56244 -15.50286 -15.14748 -14.75737 -14.42778 -13.47337 -13.45124 -13.42180 -13.32286 -13.24145 -13.04648 -12.94716 -12.89486 -12.57890 -12.43230 -12.34979 -12.04436 -11.52861 -11.30178 -10.96919 -10.87074 -10.64839 -10.41263 -10.16790 -8.20248 -6.30833 -1.00271 -0.70441 0.03552 0.41388 1.40472 1.43709 1.45168 1.57397 1.96309 2.43778 2.55784 2.91524 3.15207 3.33632 3.76263 4.07778 4.15487 4.19830 4.21624 4.49450 4.56640 4.78667 4.85023 4.92678 4.94247 4.99860 5.27833 5.49703 5.62368 5.80698 5.98411 6.21617 6.33566 6.84937 7.38655 8.92035 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004596 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.655671 B = 6091.303780 C = 7186.470140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C 0.086 3.914 4 N -0.511 5.511 5 C 0.186 3.814 6 C -0.860 4.860 7 S 2.746 3.254 8 O -0.979 6.979 9 O -0.973 6.973 10 N -1.106 6.106 11 C 0.131 3.869 12 C 0.020 3.980 13 C -0.542 4.542 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.258 1.258 19 H -0.282 1.282 20 H -0.280 1.280 21 S 0.248 5.752 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.205 0.795 28 H 0.425 0.575 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.003 0.997 32 H 0.009 0.991 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 -9.912 6.448 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.189 4.189 4 N -0.227 5.227 5 C 0.026 3.974 6 C -1.066 5.066 7 S 2.831 3.169 8 O -0.969 6.969 9 O -0.963 6.963 10 N -0.869 5.869 11 C 0.005 3.995 12 C -0.019 4.019 13 C -0.581 4.581 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.182 1.182 19 H -0.207 1.207 20 H -0.205 1.205 21 S 0.507 5.493 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.072 0.928 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.222 0.778 28 H 0.261 0.739 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.021 0.979 32 H 0.028 0.972 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.955 -9.743 5.537 21.165 hybrid contribution 1.395 0.166 0.742 1.589 sum -16.560 -9.577 6.279 20.134 Atomic orbital electron populations 1.21804 0.91807 1.04404 1.02409 1.20687 0.97915 0.84809 1.06601 1.28524 0.95870 1.02911 0.91595 1.66514 1.17666 1.06179 1.32313 1.21963 0.89321 0.91425 0.94691 1.37084 1.32140 1.29653 1.07682 1.00225 0.71974 0.71978 0.72698 1.93561 1.78828 1.85451 1.39048 1.93549 1.84561 1.59809 1.58391 1.55345 1.25182 1.55740 1.50588 1.21360 0.96223 0.91841 0.90030 1.19163 0.90095 0.96279 0.96365 1.21590 0.96259 1.16120 1.24130 0.91265 1.25919 0.97931 0.97151 0.98532 1.70087 1.08417 1.33878 1.44693 0.85404 0.78460 0.78795 0.78430 1.18182 1.20745 1.20538 1.83968 1.55844 0.99974 1.09559 0.92149 0.88581 0.92827 0.86782 0.87221 0.77814 0.73911 0.91485 0.91261 0.97865 0.97239 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.77 16 2 C -0.06 -0.74 6.52 29.85 0.19 -0.55 16 3 C 0.09 1.79 6.64 88.52 0.59 2.38 16 4 N -0.51 -12.60 10.54 -191.44 -2.02 -14.62 16 5 C 0.19 4.70 11.07 83.66 0.93 5.62 16 6 C -0.86 -23.51 6.63 66.78 0.44 -23.07 16 7 S 2.75 85.78 5.89 -56.49 -0.33 85.45 16 8 O -0.98 -35.75 17.42 -128.00 -2.23 -37.98 16 9 O -0.97 -32.49 17.84 -128.00 -2.28 -34.77 16 10 N -1.11 -36.26 6.00 -187.49 -1.12 -37.38 16 11 C 0.13 5.03 6.16 86.38 0.53 5.57 16 12 C 0.02 0.97 5.12 29.85 0.15 1.12 16 13 C -0.54 -29.03 9.11 25.60 0.23 -28.80 16 14 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 15 C 0.00 0.17 5.46 84.66 0.46 0.63 16 16 N -0.93 -54.50 13.29 21.45 0.28 -54.21 16 17 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 S 0.25 5.86 23.11 -56.49 -1.31 4.55 16 22 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.21 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.42 12.85 8.65 -96.75 -0.84 12.02 16 29 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.07 2.67 7.75 -2.39 -0.02 2.66 16 31 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -69.72 317.19 -2.45 -72.17 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.29 Total: 10.22 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 4.24 Total: -37.87 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -2.86 Total: -106.21 kcal Atomic # 8 Polarization: -68.23 SS G_CDS: -4.51 Total: -72.75 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 91.64 SS G_CDS: -1.64 Total: 90.00 kcal Total: -69.72 -2.45 -72.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359189204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.750 kcal (2) G-P(sol) polarization free energy of solvation -69.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds