Wall clock time and date at job start Tue Mar 31 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47114 * 2 1 4 4 N 1.29028 * 124.91855 * 90.00069 * 3 2 1 5 5 C 1.31771 * 117.12878 * 180.02562 * 4 3 2 6 6 C 1.33644 * 114.50041 * 359.97438 * 5 4 3 7 7 S 1.76204 * 126.03777 * 180.02562 * 6 5 4 8 8 O 1.42098 * 106.40120 * 203.54493 * 7 6 5 9 9 O 1.42097 * 106.40041 * 336.46243 * 7 6 5 10 10 N 1.65596 * 107.21653 * 90.00175 * 7 6 5 11 11 C 1.46500 * 120.00120 * 65.00020 * 10 7 6 12 12 H 1.08999 * 109.46966 * 24.99896 * 11 10 7 13 13 C 1.53004 * 109.47288 * 264.99999 * 11 10 7 14 14 C 1.50698 * 109.47359 * 144.99796 * 11 10 7 15 15 H 1.07999 * 119.99581 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00091 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00223 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99775 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47658 * 89.99779 * 18 16 14 20 20 H 1.48504 * 109.46825 * 209.99831 * 18 16 14 21 21 H 1.48498 * 109.47197 * 329.99045 * 18 16 14 22 22 S 1.70979 * 124.91569 * 270.00378 * 3 2 1 23 23 H 1.09002 * 109.46926 * 59.99506 * 1 2 3 24 24 H 1.08993 * 109.47493 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47099 * 300.00187 * 1 2 3 26 26 H 1.08998 * 109.46950 * 240.00324 * 2 1 3 27 27 H 1.09001 * 109.47121 * 119.99978 * 2 1 3 28 28 H 1.08002 * 122.75353 * 180.27327 * 5 4 3 29 29 H 0.96997 * 120.00248 * 244.99579 * 10 7 6 30 30 H 1.08996 * 109.47066 * 59.99627 * 13 11 10 31 31 H 1.08995 * 109.46902 * 179.97438 * 13 11 10 32 32 H 1.08999 * 109.46357 * 299.99526 * 13 11 10 33 33 H 0.96993 * 120.00472 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7132 3.3482 0.8794 6 6 2.8414 3.7105 -0.4006 7 16 3.3957 5.2781 -0.9838 8 8 2.8707 5.4266 -2.2958 9 8 3.1464 6.2065 0.0627 10 7 5.0411 5.1869 -1.1460 11 6 5.6307 4.2792 -2.1333 12 1 4.9128 4.0962 -2.9328 13 6 5.9901 2.9544 -1.4575 14 6 6.8756 4.9034 -2.7091 15 1 7.1954 5.8788 -2.3735 16 6 7.6058 4.2295 -3.6651 17 7 7.2161 3.0419 -4.0741 18 14 9.1493 5.0029 -4.3783 19 1 10.3241 4.6086 -3.5601 20 1 9.3384 4.5335 -5.7745 21 1 9.0124 6.4816 -4.3677 22 16 2.3585 2.3435 -1.4020 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.9513 4.0087 1.7001 29 1 5.6147 5.7345 -0.5874 30 1 5.0897 2.5030 -1.0410 31 1 6.4283 2.2790 -2.1922 32 1 6.7080 3.1375 -0.6580 33 1 7.7299 2.5677 -4.7464 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359242631.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:28 Heat of formation + Delta-G solvation = -42.826648 kcal Electronic energy + Delta-G solvation = -19173.189121 eV Core-core repulsion = 16066.592259 eV Total energy + Delta-G solvation = -3106.596863 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70313 -36.75703 -35.53481 -35.40087 -34.22565 -32.24464 -29.79763 -28.38759 -25.88711 -25.27877 -22.99747 -21.03993 -20.78151 -18.67184 -18.34148 -17.42438 -16.74757 -15.99635 -15.33148 -15.11380 -14.75124 -14.56167 -14.16336 -13.86708 -13.58222 -12.76175 -12.62514 -12.27241 -12.03000 -11.83733 -11.74807 -11.60901 -11.57880 -11.51840 -11.25898 -11.11091 -11.02088 -10.69653 -10.41993 -10.15073 -9.65120 -9.63789 -9.26575 -8.90758 -8.70617 -8.36207 -6.17322 -4.24570 0.30707 0.88447 1.32811 1.68095 2.65776 3.23932 3.31010 3.34482 3.64698 3.95098 4.17365 4.32976 4.71784 4.89328 4.93243 4.97086 5.15664 5.36253 5.47496 5.55097 5.67184 5.87894 6.03683 6.25192 6.68590 6.73410 6.92359 7.49642 7.55605 7.59679 7.78669 7.93922 8.19878 8.77825 9.41507 10.89020 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.005586 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.155806 B = 5011.745841 C = 5820.623144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C 0.059 3.941 4 N -0.492 5.492 5 C 0.172 3.828 6 C -0.827 4.827 7 S 2.717 3.283 8 O -0.954 6.954 9 O -0.973 6.973 10 N -1.094 6.094 11 C 0.267 3.733 12 H 0.051 0.949 13 C -0.159 4.159 14 C -0.521 4.521 15 H 0.066 0.934 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.903 3.097 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 S 0.264 5.736 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.186 0.814 29 H 0.411 0.589 30 H 0.009 0.991 31 H 0.095 0.905 32 H 0.035 0.965 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 -5.972 6.821 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.216 4.216 4 N -0.208 5.208 5 C 0.013 3.987 6 C -1.030 5.030 7 S 2.799 3.201 8 O -0.943 6.943 9 O -0.963 6.963 10 N -0.856 5.856 11 C 0.163 3.837 12 H 0.069 0.931 13 C -0.219 4.219 14 C -0.561 4.561 15 H 0.084 0.916 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.730 3.270 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 S 0.523 5.477 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.203 0.797 29 H 0.246 0.754 30 H 0.028 0.972 31 H 0.114 0.886 32 H 0.054 0.946 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.563 -6.052 5.785 13.478 hybrid contribution 1.515 0.409 0.891 1.805 sum -9.048 -5.643 6.676 12.580 Atomic orbital electron populations 1.21788 0.93180 1.02768 1.02874 1.20340 0.96918 0.87349 1.04844 1.27720 0.99013 1.01898 0.92953 1.66377 1.16515 1.06060 1.31834 1.21500 0.91577 0.91134 0.94464 1.37577 1.28801 1.29856 1.06725 1.01296 0.73410 0.71895 0.73479 1.93591 1.78936 1.84487 1.37334 1.93532 1.85300 1.58997 1.58474 1.55534 1.23405 1.55769 1.50898 1.18663 0.94907 0.85414 0.84724 0.93082 1.22329 0.98307 1.00345 1.00882 1.21198 1.08454 1.03908 1.22548 0.91605 1.24910 0.97959 0.94895 0.96069 1.69850 1.39467 1.12762 1.30559 0.86422 0.82620 0.79631 0.78306 1.20595 1.21052 1.19729 1.84035 1.54509 1.00403 1.08783 0.92155 0.91121 0.91862 0.89092 0.88432 0.79671 0.75410 0.97196 0.88602 0.94615 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.05 -0.52 6.52 -27.88 -0.18 -0.70 16 3 C 0.06 0.81 6.64 -13.46 -0.09 0.72 16 4 N -0.49 -7.51 10.54 -11.86 -0.13 -7.63 16 5 C 0.17 2.69 11.07 -19.19 -0.21 2.48 16 6 C -0.83 -14.09 5.62 29.12 0.16 -13.92 16 7 S 2.72 51.72 5.87 -107.50 -0.63 51.09 16 8 O -0.95 -20.90 17.29 -57.17 -0.99 -21.89 16 9 O -0.97 -18.98 17.84 -57.17 -1.02 -20.00 16 10 N -1.09 -21.84 5.46 -5.88 -0.03 -21.87 16 11 C 0.27 6.29 2.89 -69.08 -0.20 6.09 16 12 H 0.05 1.32 7.50 -51.93 -0.39 0.93 16 13 C -0.16 -3.54 9.29 37.16 0.35 -3.19 16 14 C -0.52 -13.50 8.76 -34.44 -0.30 -13.80 16 15 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -23.83 11.32 55.43 0.63 -23.20 16 18 Si 0.90 20.38 29.54 -169.99 -5.02 15.35 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 S 0.26 4.10 22.22 -107.50 -2.39 1.71 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.19 2.48 8.06 -52.49 -0.42 2.05 16 29 H 0.41 7.37 8.83 -34.47 -0.30 7.07 16 30 H 0.01 0.18 6.11 -51.93 -0.32 -0.14 16 31 H 0.10 2.35 6.07 -51.93 -0.32 2.03 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -31.04 308.95 -8.96 -40.00 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.83 Total: 3.33 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -0.20 Total: -21.54 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.47 Total: -52.71 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -2.01 Total: -41.89 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 55.81 SS G_CDS: -3.02 Total: 52.79 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.04 -8.96 -40.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359242631.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.830 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds