Wall clock time and date at job start Tue Mar 31 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47114 * 2 1 4 4 N 1.29028 * 124.91855 * 90.00069 * 3 2 1 5 5 C 1.31771 * 117.12878 * 180.02562 * 4 3 2 6 6 C 1.33644 * 114.50041 * 359.97438 * 5 4 3 7 7 S 1.76204 * 126.03777 * 180.02562 * 6 5 4 8 8 O 1.42098 * 106.40120 * 203.54493 * 7 6 5 9 9 O 1.42097 * 106.40041 * 336.46243 * 7 6 5 10 10 N 1.65596 * 107.21653 * 90.00175 * 7 6 5 11 11 C 1.46500 * 120.00120 * 65.00020 * 10 7 6 12 12 H 1.08999 * 109.46966 * 24.99896 * 11 10 7 13 13 C 1.53004 * 109.47288 * 264.99999 * 11 10 7 14 14 C 1.50698 * 109.47359 * 144.99796 * 11 10 7 15 15 H 1.07999 * 119.99581 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00091 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00223 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99775 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47658 * 89.99779 * 18 16 14 20 20 H 1.48504 * 109.46825 * 209.99831 * 18 16 14 21 21 H 1.48498 * 109.47197 * 329.99045 * 18 16 14 22 22 S 1.70979 * 124.91569 * 270.00378 * 3 2 1 23 23 H 1.09002 * 109.46926 * 59.99506 * 1 2 3 24 24 H 1.08993 * 109.47493 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47099 * 300.00187 * 1 2 3 26 26 H 1.08998 * 109.46950 * 240.00324 * 2 1 3 27 27 H 1.09001 * 109.47121 * 119.99978 * 2 1 3 28 28 H 1.08002 * 122.75353 * 180.27327 * 5 4 3 29 29 H 0.96997 * 120.00248 * 244.99579 * 10 7 6 30 30 H 1.08996 * 109.47066 * 59.99627 * 13 11 10 31 31 H 1.08995 * 109.46902 * 179.97438 * 13 11 10 32 32 H 1.08999 * 109.46357 * 299.99526 * 13 11 10 33 33 H 0.96993 * 120.00472 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7132 3.3482 0.8794 6 6 2.8414 3.7105 -0.4006 7 16 3.3957 5.2781 -0.9838 8 8 2.8707 5.4266 -2.2958 9 8 3.1464 6.2065 0.0627 10 7 5.0411 5.1869 -1.1460 11 6 5.6307 4.2792 -2.1333 12 1 4.9128 4.0962 -2.9328 13 6 5.9901 2.9544 -1.4575 14 6 6.8756 4.9034 -2.7091 15 1 7.1954 5.8788 -2.3735 16 6 7.6058 4.2295 -3.6651 17 7 7.2161 3.0419 -4.0741 18 14 9.1493 5.0029 -4.3783 19 1 10.3241 4.6086 -3.5601 20 1 9.3384 4.5335 -5.7745 21 1 9.0124 6.4816 -4.3677 22 16 2.3585 2.3435 -1.4020 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.9513 4.0087 1.7001 29 1 5.6147 5.7345 -0.5874 30 1 5.0897 2.5030 -1.0410 31 1 6.4283 2.2790 -2.1922 32 1 6.7080 3.1375 -0.6580 33 1 7.7299 2.5677 -4.7464 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359242631.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:28 Heat of formation + Delta-G solvation = -65.887380 kcal Electronic energy + Delta-G solvation = -19174.189110 eV Core-core repulsion = 16066.592259 eV Total energy + Delta-G solvation = -3107.596851 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88735 -38.36205 -37.31978 -37.01497 -35.08878 -34.14794 -30.94608 -30.16875 -27.29664 -26.85709 -23.93915 -22.87707 -22.05547 -20.16382 -19.59694 -19.07056 -18.18608 -17.69107 -17.05767 -16.50918 -16.00521 -15.82076 -15.38589 -15.14709 -14.73910 -14.58276 -14.07495 -13.60714 -13.44718 -13.34492 -13.22239 -13.07449 -12.90548 -12.83605 -12.81943 -12.55050 -12.44948 -12.26053 -12.03724 -12.00429 -11.20514 -10.86747 -10.81753 -10.61487 -10.15852 -10.11100 -8.14747 -6.28525 -0.92399 -0.58924 0.08796 0.48520 1.45412 1.45880 1.47915 1.57226 2.11943 2.45101 2.65753 2.94564 3.15421 3.45521 3.79288 4.13417 4.22060 4.23126 4.48129 4.58949 4.86047 4.88579 4.94990 4.96013 5.01122 5.09367 5.28514 5.57292 5.73251 6.00886 6.08545 6.36355 6.38192 6.80742 7.40744 8.90842 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.005586 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.155806 B = 5011.745841 C = 5820.623144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C 0.084 3.916 4 N -0.506 5.506 5 C 0.185 3.815 6 C -0.853 4.853 7 S 2.737 3.263 8 O -0.988 6.988 9 O -0.978 6.978 10 N -1.095 6.095 11 C 0.272 3.728 12 H 0.024 0.976 13 C -0.147 4.147 14 C -0.543 4.543 15 H 0.066 0.934 16 C 0.020 3.980 17 N -0.912 5.912 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.271 1.271 22 S 0.238 5.762 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.206 0.794 29 H 0.420 0.580 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.926 -6.994 7.831 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.191 4.191 4 N -0.222 5.222 5 C 0.025 3.975 6 C -1.059 5.059 7 S 2.823 3.177 8 O -0.978 6.978 9 O -0.969 6.969 10 N -0.857 5.857 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.207 4.207 14 C -0.583 4.583 15 H 0.085 0.915 16 C -0.181 4.181 17 N -0.550 5.550 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.196 1.196 22 S 0.497 5.503 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.223 0.777 29 H 0.256 0.744 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.700 -7.030 6.793 14.493 hybrid contribution 1.454 0.631 0.653 1.714 sum -9.246 -6.399 7.446 13.486 Atomic orbital electron populations 1.21799 0.91698 1.04416 1.02391 1.20672 0.98006 0.84756 1.06467 1.28509 0.96156 1.02923 0.91487 1.66498 1.17624 1.06020 1.32059 1.21917 0.89696 0.91483 0.94432 1.37087 1.31699 1.29468 1.07622 1.00339 0.72591 0.72164 0.72592 1.93544 1.79337 1.85524 1.39413 1.93516 1.85161 1.59912 1.58280 1.55338 1.24034 1.55701 1.50636 1.18364 0.93564 0.86456 0.84895 0.95849 1.22142 0.99125 0.99239 1.00154 1.21571 1.09455 1.04194 1.23073 0.91543 1.25647 1.00630 0.95358 0.96436 1.69960 1.40476 1.13674 1.30905 0.85499 0.79468 0.78757 0.77554 1.19824 1.20930 1.19557 1.84153 1.55448 1.00655 1.10045 0.92365 0.88453 0.92652 0.87168 0.87031 0.77733 0.74417 0.95093 0.90833 0.94262 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.06 -0.95 6.52 29.85 0.19 -0.76 16 3 C 0.08 2.14 6.64 88.52 0.59 2.73 16 4 N -0.51 -14.38 10.54 -191.44 -2.02 -16.40 16 5 C 0.18 5.47 11.07 83.66 0.93 6.40 16 6 C -0.85 -28.50 5.62 66.78 0.38 -28.13 16 7 S 2.74 104.44 5.87 -56.49 -0.33 104.11 16 8 O -0.99 -44.26 17.29 -128.00 -2.21 -46.47 16 9 O -0.98 -37.64 17.84 -128.00 -2.28 -39.92 16 10 N -1.10 -43.86 5.46 -172.52 -0.94 -44.80 16 11 C 0.27 12.99 2.89 44.25 0.13 13.12 16 12 H 0.02 1.25 7.50 -2.39 -0.02 1.24 16 13 C -0.15 -6.53 9.29 71.98 0.67 -5.86 16 14 C -0.54 -28.29 8.76 25.60 0.22 -28.07 16 15 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 16 C 0.02 1.04 5.30 84.66 0.45 1.49 16 17 N -0.91 -49.28 11.32 21.45 0.24 -49.04 16 18 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 S 0.24 7.24 22.22 -56.49 -1.26 5.98 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.21 5.06 8.06 -2.91 -0.02 5.03 16 29 H 0.42 14.98 8.83 -96.75 -0.85 14.13 16 30 H 0.03 1.20 6.11 -2.39 -0.01 1.18 16 31 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -65.51 308.95 -2.22 -67.73 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.29 Total: 15.46 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 4.27 Total: -40.28 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -2.72 Total: -110.24 kcal Atomic # 8 Polarization: -81.90 SS G_CDS: -4.50 Total: -86.39 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 111.68 SS G_CDS: -1.59 Total: 110.09 kcal Total: -65.51 -2.22 -67.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359242631.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.840 kcal (2) G-P(sol) polarization free energy of solvation -65.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds