Wall clock time and date at job start Tue Mar 31 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46782 * 2 1 4 4 N 1.29023 * 124.91386 * 90.02243 * 3 2 1 5 5 C 1.31777 * 117.12367 * 179.97438 * 4 3 2 6 6 C 1.33644 * 114.50231 * 0.02562 * 5 4 3 7 7 S 1.76199 * 126.03683 * 179.97438 * 6 5 4 8 8 O 1.42091 * 106.40399 * 336.46214 * 7 6 5 9 9 O 1.42097 * 106.40085 * 203.54044 * 7 6 5 10 10 N 1.65599 * 107.21747 * 90.00464 * 7 6 5 11 11 C 1.36939 * 120.00283 * 89.99857 * 10 7 6 12 12 H 1.07993 * 120.00052 * 35.73670 * 11 10 7 13 13 C 1.38816 * 119.99858 * 216.01673 * 11 10 7 14 14 N 1.31620 * 119.99446 * 214.81413 * 13 11 10 15 15 Si 1.86797 * 120.00246 * 34.80790 * 13 11 10 16 16 H 1.48506 * 109.46821 * 95.17450 * 15 13 11 17 17 H 1.48496 * 109.47355 * 215.17562 * 15 13 11 18 18 H 1.48497 * 109.47413 * 335.17808 * 15 13 11 19 19 C 1.46507 * 119.99949 * 269.99890 * 10 7 6 20 20 C 1.53003 * 109.46605 * 263.27857 * 19 10 7 21 21 S 1.70979 * 124.91723 * 270.34331 * 3 2 1 22 22 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47377 * 299.99337 * 1 2 3 24 24 H 1.09004 * 109.47673 * 60.00189 * 1 2 3 25 25 H 1.09000 * 109.46926 * 240.00829 * 2 1 3 26 26 H 1.08997 * 109.47446 * 120.00057 * 2 1 3 27 27 H 1.08008 * 122.75107 * 180.02562 * 5 4 3 28 28 H 0.96999 * 119.99716 * 180.02562 * 14 13 11 29 29 H 1.08995 * 109.47111 * 23.27445 * 19 10 7 30 30 H 1.08990 * 109.47151 * 143.27838 * 19 10 7 31 31 H 1.09010 * 109.46800 * 175.00539 * 20 19 10 32 32 H 1.08992 * 109.47488 * 295.00575 * 20 19 10 33 33 H 1.09005 * 109.47329 * 55.01351 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2788 2.1170 1.0580 5 6 2.7143 3.3478 0.8794 6 6 2.8419 3.7103 -0.4006 7 16 3.3957 5.2781 -0.9837 8 8 3.1470 6.2063 0.0630 9 8 2.8702 5.4268 -2.2955 10 7 5.0412 5.1870 -1.1467 11 6 5.5902 4.7795 -2.3332 12 1 5.1230 5.0547 -3.2671 13 6 6.7441 4.0078 -2.3353 14 7 7.6368 4.1615 -3.2901 15 14 7.0298 2.7513 -0.9829 16 1 6.5659 1.4170 -1.4409 17 1 8.4786 2.6888 -0.6633 18 1 6.2720 3.1491 0.2306 19 6 5.9096 5.5424 -0.0215 20 6 6.3781 6.9906 -0.1767 21 16 2.3505 2.3464 -1.4020 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.9490 4.0095 1.7002 28 1 8.4429 3.6220 -3.2918 29 1 5.3563 5.4375 0.9117 30 1 6.7750 4.8801 -0.0072 31 1 6.9509 7.2834 0.7034 32 1 7.0056 7.0765 -1.0637 33 1 5.5115 7.6438 -0.2799 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359260826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:27 Heat of formation + Delta-G solvation = -28.667819 kcal Electronic energy + Delta-G solvation = -19631.309497 eV Core-core repulsion = 16525.326607 eV Total energy + Delta-G solvation = -3105.982890 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.28197 -36.40498 -35.86631 -34.50134 -33.96839 -32.60138 -29.63156 -29.28996 -25.49389 -24.72526 -22.68930 -22.39536 -20.18932 -18.43453 -17.81414 -17.09470 -16.58102 -16.04585 -15.56702 -14.83129 -14.45102 -14.18507 -13.84291 -13.62344 -13.37408 -13.18532 -12.93179 -12.57896 -12.35436 -11.82583 -11.68527 -11.32284 -11.25193 -11.19463 -11.13136 -10.82191 -10.80592 -10.59676 -10.47282 -10.36171 -9.97090 -9.28841 -9.24524 -9.19753 -8.59661 -8.31541 -7.02814 -4.25015 0.75802 1.50698 1.79733 2.11808 2.89184 3.00914 3.04614 3.08470 3.80652 4.07947 4.25229 4.46504 4.89617 4.92539 5.11107 5.16401 5.51034 5.60339 5.67050 5.67207 5.81369 5.96620 5.98376 6.03731 6.08847 6.29892 6.42728 6.58964 6.85205 7.00999 7.15957 7.93498 8.02240 8.57689 8.74579 10.01850 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.018453 B = 0.007811 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.968436 B = 3583.666664 C = 4225.308026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.034 3.966 4 N -0.490 5.490 5 C 0.126 3.874 6 C -0.779 4.779 7 S 2.517 3.483 8 O -0.996 6.996 9 O -0.973 6.973 10 N -0.808 5.808 11 C -0.236 4.236 12 H 0.127 0.873 13 C 0.079 3.921 14 N -0.789 5.789 15 Si 0.851 3.149 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.248 1.248 19 C 0.125 3.875 20 C -0.157 4.157 21 S 0.217 5.783 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.178 0.822 28 H 0.286 0.714 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 -6.639 4.792 9.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.243 4.243 4 N -0.205 5.205 5 C -0.029 4.029 6 C -0.974 4.974 7 S 2.617 3.383 8 O -0.986 6.986 9 O -0.962 6.962 10 N -0.631 5.631 11 C -0.390 4.390 12 H 0.145 0.855 13 C -0.142 4.142 14 N -0.423 5.423 15 Si 0.674 3.326 16 H -0.194 1.194 17 H -0.196 1.196 18 H -0.172 1.172 19 C -0.001 4.001 20 C -0.216 4.216 21 S 0.473 5.527 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.195 0.805 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.939 -6.426 4.187 9.122 hybrid contribution 0.468 -0.998 1.630 1.968 sum -4.471 -7.424 5.817 10.437 Atomic orbital electron populations 1.21769 0.93570 1.02322 1.02795 1.20214 0.96673 0.87846 1.04131 1.27478 1.01657 1.01890 0.93231 1.66293 1.15806 1.06397 1.32031 1.21351 0.95387 0.91184 0.94959 1.38912 1.21867 1.31418 1.05199 1.13066 0.76036 0.76000 0.73205 1.93328 1.85824 1.61474 1.57951 1.93362 1.79458 1.85968 1.37456 1.54487 1.20608 1.71533 1.16431 1.19483 1.06260 1.28021 0.85243 0.85531 1.25850 0.95423 0.96138 0.96763 1.69963 1.06593 1.33616 1.32092 0.87341 0.79089 0.82721 0.83446 1.19439 1.19618 1.17163 1.21314 0.94463 0.96314 0.88010 1.22055 1.01628 0.96139 1.01783 1.83734 1.56474 1.02187 1.10299 0.91478 0.92002 0.92252 0.89647 0.89030 0.80509 0.90286 0.91448 0.92268 0.92712 0.91319 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.05 -0.58 6.52 -27.88 -0.18 -0.76 16 3 C 0.03 0.57 6.64 -13.45 -0.09 0.48 16 4 N -0.49 -9.23 10.54 -11.86 -0.13 -9.36 16 5 C 0.13 2.51 11.07 -19.18 -0.21 2.29 16 6 C -0.78 -16.53 6.66 29.12 0.19 -16.34 16 7 S 2.52 58.73 5.76 -107.50 -0.62 58.11 16 8 O -1.00 -24.00 16.77 -57.18 -0.96 -24.96 16 9 O -0.97 -25.11 16.87 -57.18 -0.96 -26.07 16 10 N -0.81 -18.31 2.47 -59.91 -0.15 -18.46 16 11 C -0.24 -5.73 9.40 -15.06 -0.14 -5.87 16 12 H 0.13 3.32 7.58 -52.49 -0.40 2.92 16 13 C 0.08 1.85 5.09 -17.43 -0.09 1.76 16 14 N -0.79 -18.98 13.97 55.49 0.78 -18.21 16 15 Si 0.85 17.84 26.27 -169.99 -4.47 13.37 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.25 -5.07 5.88 56.52 0.33 -4.73 16 19 C 0.12 2.49 4.73 -4.04 -0.02 2.47 16 20 C -0.16 -2.82 10.19 37.16 0.38 -2.44 16 21 S 0.22 4.07 23.11 -107.50 -2.48 1.58 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.18 3.18 8.06 -52.48 -0.42 2.76 16 28 H 0.29 6.28 8.31 -40.82 -0.34 5.94 16 29 H 0.07 1.24 7.55 -51.93 -0.39 0.85 16 30 H 0.06 1.15 4.02 -51.93 -0.21 0.94 16 31 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -28.90 306.69 -8.17 -37.07 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.01 Total: 1.84 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 0.21 Total: -19.54 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.50 Total: -46.02 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.92 Total: -51.04 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -4.47 Total: 13.37 kcal Atomic # 16 Polarization: 62.80 SS G_CDS: -3.10 Total: 59.69 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.90 -8.17 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359260826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.403 kcal (2) G-P(sol) polarization free energy of solvation -28.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds