Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46782 * 2 1 4 4 N 1.29023 * 124.91386 * 90.02243 * 3 2 1 5 5 C 1.31777 * 117.12367 * 179.97438 * 4 3 2 6 6 C 1.33644 * 114.50231 * 0.02562 * 5 4 3 7 7 S 1.76199 * 126.03683 * 179.97438 * 6 5 4 8 8 O 1.42091 * 106.40399 * 336.46214 * 7 6 5 9 9 O 1.42097 * 106.40085 * 203.54044 * 7 6 5 10 10 N 1.65599 * 107.21747 * 90.00464 * 7 6 5 11 11 C 1.36939 * 120.00283 * 89.99857 * 10 7 6 12 12 H 1.07993 * 120.00052 * 35.73670 * 11 10 7 13 13 C 1.38816 * 119.99858 * 216.01673 * 11 10 7 14 14 N 1.31620 * 119.99446 * 214.81413 * 13 11 10 15 15 Si 1.86797 * 120.00246 * 34.80790 * 13 11 10 16 16 H 1.48506 * 109.46821 * 95.17450 * 15 13 11 17 17 H 1.48496 * 109.47355 * 215.17562 * 15 13 11 18 18 H 1.48497 * 109.47413 * 335.17808 * 15 13 11 19 19 C 1.46507 * 119.99949 * 269.99890 * 10 7 6 20 20 C 1.53003 * 109.46605 * 263.27857 * 19 10 7 21 21 S 1.70979 * 124.91723 * 270.34331 * 3 2 1 22 22 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47377 * 299.99337 * 1 2 3 24 24 H 1.09004 * 109.47673 * 60.00189 * 1 2 3 25 25 H 1.09000 * 109.46926 * 240.00829 * 2 1 3 26 26 H 1.08997 * 109.47446 * 120.00057 * 2 1 3 27 27 H 1.08008 * 122.75107 * 180.02562 * 5 4 3 28 28 H 0.96999 * 119.99716 * 180.02562 * 14 13 11 29 29 H 1.08995 * 109.47111 * 23.27445 * 19 10 7 30 30 H 1.08990 * 109.47151 * 143.27838 * 19 10 7 31 31 H 1.09010 * 109.46800 * 175.00539 * 20 19 10 32 32 H 1.08992 * 109.47488 * 295.00575 * 20 19 10 33 33 H 1.09005 * 109.47329 * 55.01351 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2788 2.1170 1.0580 5 6 2.7143 3.3478 0.8794 6 6 2.8419 3.7103 -0.4006 7 16 3.3957 5.2781 -0.9837 8 8 3.1470 6.2063 0.0630 9 8 2.8702 5.4268 -2.2955 10 7 5.0412 5.1870 -1.1467 11 6 5.5902 4.7795 -2.3332 12 1 5.1230 5.0547 -3.2671 13 6 6.7441 4.0078 -2.3353 14 7 7.6368 4.1615 -3.2901 15 14 7.0298 2.7513 -0.9829 16 1 6.5659 1.4170 -1.4409 17 1 8.4786 2.6888 -0.6633 18 1 6.2720 3.1491 0.2306 19 6 5.9096 5.5424 -0.0215 20 6 6.3781 6.9906 -0.1767 21 16 2.3505 2.3464 -1.4020 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.9490 4.0095 1.7002 28 1 8.4429 3.6220 -3.2918 29 1 5.3563 5.4375 0.9117 30 1 6.7750 4.8801 -0.0072 31 1 6.9509 7.2834 0.7034 32 1 7.0056 7.0765 -1.0637 33 1 5.5115 7.6438 -0.2799 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359260826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -49.027960 kcal Electronic energy + Delta-G solvation = -19632.192379 eV Core-core repulsion = 16525.326607 eV Total energy + Delta-G solvation = -3106.865772 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75306 -38.10456 -37.80924 -36.46826 -35.04126 -34.35062 -31.22703 -30.71028 -26.77961 -26.49356 -24.02046 -23.84563 -21.73360 -20.17683 -19.28861 -18.86647 -18.32672 -17.75828 -17.25089 -16.28618 -15.87355 -15.69353 -15.18157 -15.07752 -14.99125 -14.66921 -14.57769 -14.20712 -13.39836 -13.34321 -12.94984 -12.86427 -12.76240 -12.74340 -12.70450 -12.66678 -12.40779 -12.29199 -12.02155 -11.96541 -11.57569 -10.95039 -10.77814 -10.74075 -10.09335 -10.05381 -8.79222 -6.10404 -0.74325 -0.24790 0.26568 0.62409 1.22873 1.35979 1.40606 1.54357 2.09844 2.33953 2.67588 2.97388 3.09843 3.74256 3.84041 4.11885 4.15951 4.21908 4.37426 4.46152 4.56903 4.59160 4.79859 4.90893 4.92438 5.01122 5.07883 5.25235 5.29043 5.43466 5.51794 6.15434 6.45106 6.77178 6.96176 8.31097 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.018453 B = 0.007811 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.968436 B = 3583.666664 C = 4225.308026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.063 3.937 4 N -0.506 5.506 5 C 0.142 3.858 6 C -0.823 4.823 7 S 2.550 3.450 8 O -1.006 7.006 9 O -1.005 7.005 10 N -0.815 5.815 11 C -0.264 4.264 12 H 0.089 0.911 13 C 0.059 3.941 14 N -0.826 5.826 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.257 1.257 18 H -0.238 1.238 19 C 0.111 3.889 20 C -0.154 4.154 21 S 0.206 5.794 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.193 0.807 28 H 0.294 0.706 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 -8.728 6.915 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C -0.213 4.213 4 N -0.221 5.221 5 C -0.015 4.015 6 C -1.022 5.022 7 S 2.651 3.349 8 O -0.996 6.996 9 O -0.996 6.996 10 N -0.640 5.640 11 C -0.415 4.415 12 H 0.107 0.893 13 C -0.159 4.159 14 N -0.461 5.461 15 Si 0.712 3.288 16 H -0.197 1.197 17 H -0.181 1.181 18 H -0.162 1.162 19 C -0.014 4.014 20 C -0.213 4.213 21 S 0.463 5.537 22 H 0.117 0.883 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.209 0.791 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.421 -8.483 6.265 11.858 hybrid contribution 0.407 -0.432 1.062 1.217 sum -5.015 -8.915 7.327 12.582 Atomic orbital electron populations 1.21783 0.91897 1.04305 1.02166 1.20595 0.97908 0.84743 1.06130 1.28429 0.98152 1.03115 0.91646 1.66420 1.17163 1.06176 1.32363 1.21695 0.93311 0.91720 0.94744 1.38352 1.25942 1.31458 1.06443 1.11050 0.75697 0.75843 0.72275 1.93314 1.86071 1.62180 1.57995 1.93328 1.80176 1.86765 1.39282 1.54163 1.20299 1.72596 1.16946 1.18997 1.07460 1.30367 0.84664 0.89342 1.26146 0.94676 0.96639 0.98477 1.69986 1.07320 1.34726 1.34020 0.86705 0.79881 0.80437 0.81746 1.19744 1.18069 1.16165 1.21646 0.94606 0.97459 0.87698 1.22049 1.01366 0.94908 1.03005 1.83767 1.56840 1.01867 1.11198 0.88261 0.92982 0.92575 0.87271 0.87353 0.79068 0.89505 0.89779 0.91600 0.88961 0.92597 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 71.98 0.71 -1.70 16 2 C -0.05 -1.07 6.52 29.85 0.19 -0.88 16 3 C 0.06 1.95 6.64 88.52 0.59 2.53 16 4 N -0.51 -17.67 10.54 -191.43 -2.02 -19.68 16 5 C 0.14 5.33 11.07 83.66 0.93 6.26 16 6 C -0.82 -34.18 6.66 66.78 0.44 -33.74 16 7 S 2.55 119.72 5.76 -56.49 -0.33 119.39 16 8 O -1.01 -47.99 16.77 -128.00 -2.15 -50.14 16 9 O -1.01 -53.45 16.87 -128.00 -2.16 -55.60 16 10 N -0.82 -37.31 2.47 -343.45 -0.85 -38.16 16 11 C -0.26 -13.25 9.40 84.03 0.79 -12.46 16 12 H 0.09 4.99 7.58 -2.91 -0.02 4.97 16 13 C 0.06 2.79 5.09 84.86 0.43 3.22 16 14 N -0.83 -40.69 13.97 21.65 0.30 -40.39 16 15 Si 0.89 35.78 26.27 68.60 1.80 37.58 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.24 -9.12 5.88 99.48 0.59 -8.54 16 19 C 0.11 4.32 4.73 86.38 0.41 4.73 16 20 C -0.15 -5.43 10.19 71.98 0.73 -4.70 16 21 S 0.21 7.49 23.11 -56.49 -1.31 6.18 16 22 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.19 6.44 8.06 -2.91 -0.02 6.42 16 28 H 0.29 13.06 8.31 -92.71 -0.77 12.29 16 29 H 0.08 2.94 7.55 -2.39 -0.02 2.92 16 30 H 0.07 2.46 4.02 -2.39 -0.01 2.45 16 31 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -62.76 306.69 -0.47 -63.23 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.00 Total: 14.31 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 5.23 Total: -36.73 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -2.57 Total: -98.23 kcal Atomic # 8 Polarization: -101.44 SS G_CDS: -4.31 Total: -105.75 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 1.80 Total: 37.58 kcal Atomic # 16 Polarization: 127.21 SS G_CDS: -1.63 Total: 125.58 kcal Total: -62.76 -0.47 -63.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359260826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.204 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds