Wall clock time and date at job start Tue Mar 31 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46615 * 2 1 4 4 N 1.46497 * 109.47254 * 240.00457 * 2 1 3 5 5 S 1.65599 * 120.00110 * 94.99537 * 4 2 1 6 6 O 1.42105 * 104.27797 * 181.07392 * 5 4 2 7 7 O 1.42101 * 104.27901 * 308.93100 * 5 4 2 8 8 C 1.81397 * 104.44825 * 65.00280 * 5 4 2 9 9 C 1.53009 * 109.47235 * 179.97438 * 8 5 4 10 10 C 1.50697 * 109.46948 * 179.97438 * 9 8 5 11 11 H 1.07997 * 120.00322 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99943 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00014 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99790 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47015 * 89.99720 * 14 12 10 16 16 H 1.48497 * 109.47108 * 209.99535 * 14 12 10 17 17 H 1.48496 * 109.47130 * 330.00106 * 14 12 10 18 18 C 1.50695 * 109.47163 * 119.99983 * 2 1 3 19 19 C 1.33635 * 126.04005 * 260.00180 * 18 2 1 20 20 N 1.31789 * 114.50169 * 180.02562 * 19 18 2 21 21 C 1.29025 * 117.11967 * 0.02562 * 20 19 18 22 22 S 1.70977 * 110.17002 * 359.72468 * 21 20 19 23 23 H 1.08998 * 109.47041 * 299.99902 * 1 2 3 24 24 H 1.09000 * 109.47228 * 59.99866 * 1 2 3 25 25 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99844 * 275.00263 * 4 2 1 27 27 H 1.09004 * 109.47032 * 299.99803 * 8 5 4 28 28 H 1.09000 * 109.47124 * 60.00075 * 8 5 4 29 29 H 1.08995 * 109.47216 * 300.00010 * 9 8 5 30 30 H 1.09000 * 109.46805 * 60.00123 * 9 8 5 31 31 H 0.97002 * 119.99563 * 179.97438 * 13 12 10 32 32 H 1.07997 * 122.74896 * 359.97438 * 19 18 2 33 33 H 1.08005 * 124.91022 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 2.4121 0.1774 -2.5505 6 8 2.8122 -0.8073 -3.4937 7 8 1.2750 0.9968 -2.7845 8 6 3.8312 1.1874 -2.0440 9 6 4.2941 2.0447 -3.2239 10 6 5.4726 2.8842 -2.8029 11 1 5.8537 2.8132 -1.7949 12 6 6.0651 3.7423 -3.7050 13 7 7.0938 4.4746 -3.3378 14 14 5.4064 3.8647 -5.4487 15 1 4.3619 4.9185 -5.5105 16 1 6.5151 4.2120 -6.3735 17 1 4.8183 2.5610 -5.8484 18 6 2.0323 -0.7104 1.2304 19 6 2.4713 -0.1281 2.3503 20 7 2.8591 -0.9693 3.2878 21 6 2.7720 -2.2286 3.0207 22 16 2.1391 -2.4555 1.4487 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 2.1110 -1.6561 -1.1950 27 1 3.5398 1.8344 -1.2166 28 1 4.6458 0.5364 -1.7268 29 1 4.5855 1.3975 -4.0510 30 1 3.4796 2.6957 -3.5415 31 1 7.5108 5.0780 -3.9725 32 1 2.5062 0.9439 2.4764 33 1 3.0534 -3.0243 3.6947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439199094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:02 Heat of formation + Delta-G solvation = -33.400915 kcal Electronic energy + Delta-G solvation = -18796.307767 eV Core-core repulsion = 15690.119635 eV Total energy + Delta-G solvation = -3106.188132 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93666 -37.04439 -36.49897 -35.63606 -33.99469 -31.52538 -31.09548 -29.01801 -26.03135 -25.72787 -22.72149 -21.46105 -20.57619 -19.05527 -18.56266 -17.75766 -17.01061 -16.19421 -15.59449 -15.53441 -14.99170 -14.77006 -14.32823 -14.18473 -13.72956 -13.63089 -13.53622 -12.84562 -12.52614 -12.04675 -11.93978 -11.82650 -11.73538 -11.53534 -11.47810 -11.26862 -11.23130 -10.50243 -10.27541 -10.06771 -9.83332 -9.60440 -9.52905 -9.31095 -9.17541 -8.68644 -6.18756 -4.20427 0.38714 0.58147 1.05302 1.46285 2.55948 2.91762 3.24692 3.32332 3.36015 3.97833 4.09602 4.33626 4.35777 4.47379 4.80421 4.89313 5.00598 5.06772 5.13060 5.28145 5.44154 5.51529 5.61679 5.82422 5.92176 6.06576 6.22684 6.76769 6.79887 6.90720 7.42478 7.51775 8.33893 8.82289 9.40659 10.93601 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.004549 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.363858 B = 6153.808975 C = 6833.103907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.231 3.769 3 H 0.108 0.892 4 N -1.122 6.122 5 S 2.588 3.412 6 O -0.963 6.963 7 O -0.960 6.960 8 C -0.582 4.582 9 C -0.006 4.006 10 C -0.521 4.521 11 H 0.078 0.922 12 C 0.072 3.928 13 N -0.895 5.895 14 Si 0.869 3.131 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.262 1.262 18 C -0.223 4.223 19 C 0.042 3.958 20 N -0.467 5.467 21 C 0.016 3.984 22 S 0.131 5.869 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.412 0.588 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.267 0.733 32 H 0.181 0.819 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 -13.602 10.975 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.121 3.879 3 H 0.125 0.875 4 N -0.878 5.878 5 S 2.685 3.315 6 O -0.953 6.953 7 O -0.950 6.950 8 C -0.716 4.716 9 C -0.046 4.046 10 C -0.560 4.560 11 H 0.096 0.904 12 C -0.130 4.130 13 N -0.533 5.533 14 Si 0.695 3.305 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.186 1.186 18 C -0.345 4.345 19 C -0.110 4.110 20 N -0.180 5.180 21 C -0.281 4.281 22 S 0.383 5.617 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.245 0.755 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.198 0.802 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.727 -14.084 10.036 21.472 hybrid contribution 0.462 0.754 -0.088 0.889 sum -12.265 -13.329 9.948 20.665 Atomic orbital electron populations 1.22369 0.93192 1.03142 1.03964 1.19044 0.94801 0.94830 0.79274 0.87468 1.56064 1.82707 1.19240 1.29800 1.05752 0.77323 0.75228 0.73187 1.93572 1.84619 1.58448 1.58692 1.93559 1.47824 1.70203 1.83441 1.30302 1.17050 1.13264 1.10941 1.19412 0.98765 0.95137 0.91266 1.20837 1.12661 1.22280 1.00179 0.90406 1.24982 0.94521 0.94862 0.98677 1.69880 1.22018 1.25612 1.35754 0.86929 0.79228 0.79534 0.84784 1.19631 1.20733 1.18629 1.26251 1.10188 0.96188 1.01899 1.21843 0.99480 1.01450 0.88180 1.66342 1.17484 1.01650 1.32558 1.28435 1.03563 0.97216 0.98931 1.83986 1.58530 1.04826 1.14398 0.91129 0.89667 0.92008 0.75455 0.85747 0.85401 0.94907 0.95287 0.92345 0.80242 0.78397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.50 37.16 0.35 -1.24 16 2 C 0.23 2.38 3.13 -69.09 -0.22 2.17 16 3 H 0.11 1.02 7.14 -51.92 -0.37 0.65 16 4 N -1.12 -13.22 5.35 -5.88 -0.03 -13.25 16 5 S 2.59 41.41 5.38 -107.50 -0.58 40.84 16 6 O -0.96 -18.25 18.08 -57.54 -1.04 -19.29 16 7 O -0.96 -17.36 17.11 -57.54 -0.98 -18.34 16 8 C -0.58 -10.22 5.90 37.16 0.22 -10.00 16 9 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 10 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 11 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 13 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 14 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 18 C -0.22 -2.19 5.52 -35.92 -0.20 -2.39 16 19 C 0.04 0.44 11.24 -19.18 -0.22 0.22 16 20 N -0.47 -5.18 10.54 -15.75 -0.17 -5.34 16 21 C 0.02 0.14 12.23 51.58 0.63 0.77 16 22 S 0.13 1.08 22.37 -107.50 -2.40 -1.33 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.41 4.24 8.01 -34.47 -0.28 3.96 16 27 H 0.12 1.92 7.44 -51.92 -0.39 1.53 16 28 H 0.13 2.09 8.14 -51.92 -0.42 1.66 16 29 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 30 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 31 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -34.97 309.33 -8.30 -43.27 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -3.89 Total: 1.74 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 0.03 Total: -23.43 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.58 Total: -44.68 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -2.02 Total: -37.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 42.49 SS G_CDS: -2.98 Total: 39.51 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.97 -8.30 -43.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439199094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.869 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds