Wall clock time and date at job start Tue Mar 31 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46615 * 2 1 4 4 N 1.46497 * 109.47254 * 240.00457 * 2 1 3 5 5 S 1.65599 * 120.00110 * 94.99537 * 4 2 1 6 6 O 1.42105 * 104.27797 * 181.07392 * 5 4 2 7 7 O 1.42101 * 104.27901 * 308.93100 * 5 4 2 8 8 C 1.81397 * 104.44825 * 65.00280 * 5 4 2 9 9 C 1.53009 * 109.47235 * 179.97438 * 8 5 4 10 10 C 1.50697 * 109.46948 * 179.97438 * 9 8 5 11 11 H 1.07997 * 120.00322 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99943 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00014 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99790 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47015 * 89.99720 * 14 12 10 16 16 H 1.48497 * 109.47108 * 209.99535 * 14 12 10 17 17 H 1.48496 * 109.47130 * 330.00106 * 14 12 10 18 18 C 1.50695 * 109.47163 * 119.99983 * 2 1 3 19 19 C 1.33635 * 126.04005 * 260.00180 * 18 2 1 20 20 N 1.31789 * 114.50169 * 180.02562 * 19 18 2 21 21 C 1.29025 * 117.11967 * 0.02562 * 20 19 18 22 22 S 1.70977 * 110.17002 * 359.72468 * 21 20 19 23 23 H 1.08998 * 109.47041 * 299.99902 * 1 2 3 24 24 H 1.09000 * 109.47228 * 59.99866 * 1 2 3 25 25 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99844 * 275.00263 * 4 2 1 27 27 H 1.09004 * 109.47032 * 299.99803 * 8 5 4 28 28 H 1.09000 * 109.47124 * 60.00075 * 8 5 4 29 29 H 1.08995 * 109.47216 * 300.00010 * 9 8 5 30 30 H 1.09000 * 109.46805 * 60.00123 * 9 8 5 31 31 H 0.97002 * 119.99563 * 179.97438 * 13 12 10 32 32 H 1.07997 * 122.74896 * 359.97438 * 19 18 2 33 33 H 1.08005 * 124.91022 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 2.4121 0.1774 -2.5505 6 8 2.8122 -0.8073 -3.4937 7 8 1.2750 0.9968 -2.7845 8 6 3.8312 1.1874 -2.0440 9 6 4.2941 2.0447 -3.2239 10 6 5.4726 2.8842 -2.8029 11 1 5.8537 2.8132 -1.7949 12 6 6.0651 3.7423 -3.7050 13 7 7.0938 4.4746 -3.3378 14 14 5.4064 3.8647 -5.4487 15 1 4.3619 4.9185 -5.5105 16 1 6.5151 4.2120 -6.3735 17 1 4.8183 2.5610 -5.8484 18 6 2.0323 -0.7104 1.2304 19 6 2.4713 -0.1281 2.3503 20 7 2.8591 -0.9693 3.2878 21 6 2.7720 -2.2286 3.0207 22 16 2.1391 -2.4555 1.4487 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 2.1110 -1.6561 -1.1950 27 1 3.5398 1.8344 -1.2166 28 1 4.6458 0.5364 -1.7268 29 1 4.5855 1.3975 -4.0510 30 1 3.4796 2.6957 -3.5415 31 1 7.5108 5.0780 -3.9725 32 1 2.5062 0.9439 2.4764 33 1 3.0534 -3.0243 3.6947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439199094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:01 Heat of formation + Delta-G solvation = -60.813630 kcal Electronic energy + Delta-G solvation = -18797.496472 eV Core-core repulsion = 15690.119635 eV Total energy + Delta-G solvation = -3107.376837 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66274 -38.29093 -37.54690 -37.02320 -35.89526 -33.47796 -31.97214 -29.77256 -27.90024 -26.43324 -23.53716 -23.24008 -21.41862 -20.26328 -19.37873 -19.33815 -18.52887 -17.27157 -17.04192 -16.48246 -16.35626 -16.07546 -15.53683 -15.20760 -14.86592 -14.81752 -14.44261 -14.36924 -13.80874 -13.50685 -13.25520 -13.14743 -13.07778 -12.96510 -12.80050 -12.43527 -12.26984 -12.19341 -11.93573 -11.72426 -11.41932 -10.83769 -10.74797 -10.53770 -10.23601 -9.89339 -8.35938 -6.41901 -0.77280 -0.26707 0.38093 0.77730 1.33067 1.35043 1.44880 1.67076 1.92084 2.30273 2.70979 2.98377 3.21150 3.38493 3.62890 3.85893 3.98123 4.05746 4.18363 4.26718 4.41369 4.56830 4.58035 4.87883 5.04089 5.07741 5.13241 5.18802 5.32192 5.47973 5.90736 6.17142 6.64595 6.73594 7.22724 8.79714 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.004549 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.363858 B = 6153.808975 C = 6833.103907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.223 3.777 3 H 0.115 0.885 4 N -1.107 6.107 5 S 2.624 3.376 6 O -0.990 6.990 7 O -0.977 6.977 8 C -0.591 4.591 9 C -0.017 4.017 10 C -0.527 4.527 11 H 0.048 0.952 12 C 0.014 3.986 13 N -0.941 5.941 14 Si 0.925 3.075 15 H -0.259 1.259 16 H -0.276 1.276 17 H -0.248 1.248 18 C -0.236 4.236 19 C 0.033 3.967 20 N -0.502 5.502 21 C 0.019 3.981 22 S 0.159 5.841 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.421 0.579 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.032 0.968 30 H 0.035 0.965 31 H 0.269 0.731 32 H 0.188 0.812 33 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 -14.992 11.059 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.114 3.886 3 H 0.132 0.868 4 N -0.867 5.867 5 S 2.719 3.281 6 O -0.980 6.980 7 O -0.967 6.967 8 C -0.722 4.722 9 C -0.056 4.056 10 C -0.566 4.566 11 H 0.066 0.934 12 C -0.185 4.185 13 N -0.581 5.581 14 Si 0.748 3.252 15 H -0.184 1.184 16 H -0.201 1.201 17 H -0.172 1.172 18 C -0.359 4.359 19 C -0.119 4.119 20 N -0.215 5.215 21 C -0.278 4.278 22 S 0.411 5.589 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.257 0.743 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.205 0.795 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -14.199 -15.484 10.121 23.320 hybrid contribution 0.918 1.099 0.044 1.433 sum -13.281 -14.385 10.165 22.060 Atomic orbital electron populations 1.22358 0.92363 1.03762 1.04049 1.19249 0.95502 0.95184 0.78666 0.86771 1.55659 1.82083 1.19514 1.29434 1.04500 0.76073 0.74374 0.73157 1.93531 1.84896 1.59119 1.60500 1.93539 1.48052 1.71021 1.84114 1.30315 1.18746 1.13623 1.09533 1.19372 0.97304 0.95478 0.93446 1.21177 1.13867 1.22621 0.98977 0.93376 1.25878 0.94810 0.94686 1.03114 1.70014 1.23742 1.26911 1.37425 0.86021 0.79091 0.80406 0.79702 1.18355 1.20103 1.17196 1.26168 1.10933 0.97296 1.01496 1.22047 0.99392 1.02074 0.88354 1.66388 1.19028 1.02718 1.33397 1.29000 1.02044 0.97231 0.99478 1.83879 1.57799 1.03294 1.13901 0.89463 0.91136 0.91169 0.74255 0.83956 0.84475 0.95012 0.94656 0.92150 0.79542 0.75509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.50 71.98 0.68 -2.12 16 2 C 0.22 4.17 3.13 44.24 0.14 4.31 16 3 H 0.11 1.96 7.14 -2.38 -0.02 1.94 16 4 N -1.11 -23.81 5.35 -172.53 -0.92 -24.74 16 5 S 2.62 79.58 5.38 -56.49 -0.30 79.28 16 6 O -0.99 -35.94 18.08 -127.65 -2.31 -38.25 16 7 O -0.98 -33.65 17.11 -127.65 -2.18 -35.83 16 8 C -0.59 -20.08 5.90 71.99 0.42 -19.66 16 9 C -0.02 -0.77 4.05 29.85 0.12 -0.65 16 10 C -0.53 -29.39 9.66 25.60 0.25 -29.14 16 11 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 12 C 0.01 0.78 5.47 84.66 0.46 1.24 16 13 N -0.94 -57.62 13.96 21.45 0.30 -57.32 16 14 Si 0.93 43.26 27.47 68.60 1.88 45.15 16 15 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.25 -10.98 6.54 99.48 0.65 -10.32 16 18 C -0.24 -4.18 5.52 24.64 0.14 -4.05 16 19 C 0.03 0.63 11.24 83.65 0.94 1.58 16 20 N -0.50 -10.33 10.54 -203.74 -2.15 -12.48 16 21 C 0.02 0.29 12.23 130.65 1.60 1.88 16 22 S 0.16 2.24 22.37 -56.49 -1.26 0.98 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.42 7.42 -2.39 -0.02 1.41 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.42 7.68 8.01 -96.75 -0.77 6.91 16 27 H 0.14 4.23 7.44 -2.39 -0.02 4.22 16 28 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 29 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 30 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -74.82 309.33 -1.89 -76.71 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.30 Total: 13.12 kcal Atomic # 6 Polarization: -51.35 SS G_CDS: 4.75 Total: -46.60 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -2.77 Total: -94.54 kcal Atomic # 8 Polarization: -69.59 SS G_CDS: -4.49 Total: -74.08 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Atomic # 16 Polarization: 81.82 SS G_CDS: -1.57 Total: 80.25 kcal Total: -74.82 -1.89 -76.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439199094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.898 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds