Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.39846 * 120.00047 * 179.97438 * 13 12 10 15 15 C 1.38862 * 120.05960 * 359.72372 * 14 13 12 16 16 C 1.38253 * 119.98041 * 179.76924 * 15 14 13 17 17 Cl 1.73597 * 119.94656 * 180.27492 * 16 15 14 18 18 C 1.38376 * 120.10254 * 0.50930 * 16 15 14 19 19 C 1.38474 * 120.12199 * 359.74769 * 18 16 15 20 20 F 1.35100 * 119.99066 * 180.02562 * 19 18 16 21 21 C 1.38484 * 120.01664 * 359.97438 * 19 18 16 22 22 F 1.35099 * 120.05257 * 179.97438 * 21 19 18 23 23 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 28 28 H 1.07997 * 120.00713 * 0.02562 * 15 14 13 29 29 H 1.07998 * 119.93709 * 179.76461 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7299 -7.2949 -0.0017 15 6 0.3650 -7.5501 0.0046 16 6 -0.0940 -8.8542 -0.0003 17 17 -1.8006 -9.1723 0.0002 18 6 0.8048 -9.9063 -0.0008 19 6 2.1669 -9.6567 -0.0016 20 9 3.0421 -10.6859 -0.0025 21 6 2.6321 -8.3523 -0.0025 22 9 3.9608 -8.1080 -0.0028 23 1 -0.4850 0.8401 -0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6170 -4.9209 0.8886 26 1 0.6176 -4.9205 -0.8913 27 1 3.1497 -5.7991 -0.0012 28 1 -0.3378 -6.7301 0.0090 29 1 0.4433 -10.9240 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442081812.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = -108.569492 kcal Electronic energy + Delta-G solvation = -19695.571057 eV Core-core repulsion = 15894.406183 eV Total energy + Delta-G solvation = -3801.164874 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.037 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.50888 -48.55009 -39.58967 -38.42051 -36.82174 -35.21459 -34.07308 -31.51047 -30.33395 -29.98259 -27.09200 -24.67780 -23.02305 -22.31002 -19.69089 -18.52481 -18.23035 -17.72764 -17.20471 -16.44399 -16.26336 -15.39972 -15.26470 -15.11814 -14.89707 -14.82085 -14.59169 -14.20988 -13.72258 -13.41956 -13.37110 -12.73998 -12.63766 -12.17552 -11.73820 -11.63709 -11.47185 -11.28691 -11.15899 -10.56704 -10.38719 -10.16887 -9.71198 -8.84445 -8.76357 -8.20198 -7.67021 -6.60403 -4.02654 0.65610 0.97771 1.75497 3.07745 3.08294 3.14898 3.17128 3.22501 3.61511 3.77982 4.04050 4.22453 4.52993 4.66265 4.82124 5.04489 5.06653 5.16212 5.47825 5.56281 5.66926 5.76677 5.84477 5.93930 6.37782 6.97294 7.37954 7.62274 7.83731 8.34580 8.95695 9.27752 9.75607 10.56142 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.003476 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.170273 B = 8053.013461 C = 9239.039097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.546 5.546 10 C 0.425 3.575 11 O -0.593 6.593 12 C 0.107 3.893 13 N -0.705 5.705 14 C 0.242 3.758 15 C -0.185 4.185 16 C 0.037 3.963 17 Cl -0.053 7.053 18 C -0.194 4.194 19 C 0.132 3.868 20 F -0.123 7.123 21 C -0.017 4.017 22 F -0.127 7.127 23 H 0.276 0.724 24 H 0.396 0.604 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.420 0.580 28 H 0.151 0.849 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -16.647 0.006 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.211 3.789 11 O -0.479 6.479 12 C -0.021 4.021 13 N -0.333 5.333 14 C 0.131 3.869 15 C -0.209 4.209 16 C 0.009 3.991 17 Cl -0.024 7.024 18 C -0.216 4.216 19 C 0.111 3.889 20 F -0.102 7.102 21 C -0.042 4.042 22 F -0.106 7.106 23 H 0.086 0.914 24 H 0.229 0.771 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.261 0.739 28 H 0.168 0.832 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.611 -16.281 0.005 16.677 hybrid contribution 0.348 0.749 0.000 0.826 sum -3.264 -15.532 0.005 15.871 Atomic orbital electron populations 1.69596 1.06010 1.28774 1.49006 1.25327 0.95692 0.99984 0.96570 0.85858 0.78808 0.80008 0.79253 1.19716 1.20773 1.19712 1.19688 0.93490 0.81924 1.48503 0.87686 1.41771 1.09416 1.04433 1.62477 1.19589 0.88329 0.84790 0.86207 1.90534 1.13668 1.86582 1.57125 1.21128 0.91972 0.86291 1.02693 1.44584 1.10865 1.00342 1.77532 1.17370 0.91576 0.84645 0.93345 1.20455 0.93196 0.96331 1.10912 1.20186 0.85317 0.93226 1.00406 1.98391 1.11535 1.95874 1.96607 1.20482 0.89568 1.00326 1.11205 1.17015 0.87129 0.82298 1.02467 1.91534 1.68301 1.56691 1.93661 1.16986 0.78288 0.91492 1.17463 1.91504 1.29486 1.94750 1.94814 0.91444 0.77060 0.89797 0.89795 0.73903 0.83175 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 13.05 55.50 0.72 -22.24 15 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 15 3 Si 0.93 20.07 29.55 -169.99 -5.02 15.04 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 7 C -0.31 -8.08 9.68 -14.94 -0.14 -8.23 15 8 H 0.11 2.91 7.16 -52.49 -0.38 2.54 15 9 N -0.55 -12.82 5.29 -10.96 -0.06 -12.88 15 10 C 0.43 9.23 7.85 -10.98 -0.09 9.14 15 11 O -0.59 -15.01 15.24 5.55 0.08 -14.93 15 12 C 0.11 1.68 5.39 -5.19 -0.03 1.65 15 13 N -0.71 -10.98 5.71 -59.75 -0.34 -11.32 15 14 C 0.24 3.28 6.66 -83.69 -0.56 2.72 15 15 C -0.18 -2.13 9.09 -39.34 -0.36 -2.49 15 16 C 0.04 0.39 6.32 -39.53 -0.25 0.14 15 17 Cl -0.05 -0.50 28.95 -51.86 -1.50 -2.01 15 18 C -0.19 -2.02 9.80 -39.44 -0.39 -2.40 15 19 C 0.13 1.62 7.30 -39.40 -0.29 1.34 15 20 F -0.12 -1.56 17.18 2.25 0.04 -1.52 15 21 C -0.02 -0.23 7.32 -39.21 -0.29 -0.52 15 22 F -0.13 -1.95 16.55 2.25 0.04 -1.92 15 23 H 0.28 6.72 8.31 -40.82 -0.34 6.38 15 24 H 0.40 8.72 7.90 -40.82 -0.32 8.40 15 25 H 0.08 1.14 7.94 -51.93 -0.41 0.73 15 26 H 0.08 1.14 7.96 -51.93 -0.41 0.73 15 27 H 0.42 7.33 6.92 -40.82 -0.28 7.05 15 28 H 0.15 1.55 6.73 -52.49 -0.35 1.20 15 29 H 0.15 1.24 8.06 -52.49 -0.42 0.81 15 LS Contribution 288.73 15.07 4.35 4.35 Total: -1.00 -28.12 288.73 -5.89 -34.01 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -1.72 Total: 11.46 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.48 Total: 1.94 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.33 Total: -46.43 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.08 Total: -14.93 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.12 -5.89 -34.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442081812.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.564 kcal (2) G-P(sol) polarization free energy of solvation -28.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds