Wall clock time and date at job start Tue Mar 31 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47320 * 41.33560 * 3 2 1 5 5 C 1.36639 * 119.99939 * 262.86621 * 4 3 2 6 6 H 1.08002 * 119.99437 * 201.96507 * 5 4 3 7 7 C 1.39186 * 120.00030 * 21.96747 * 5 4 3 8 8 N 1.31278 * 120.00203 * 10.99226 * 7 5 4 9 9 Si 1.86796 * 119.99951 * 190.98981 * 7 5 4 10 10 H 1.48505 * 109.47003 * 89.99880 * 9 7 5 11 11 H 1.48492 * 109.47350 * 210.00185 * 9 7 5 12 12 H 1.48506 * 109.47232 * 330.00275 * 9 7 5 13 13 C 1.34775 * 119.99802 * 82.86959 * 4 3 2 14 14 O 1.21736 * 119.99969 * 180.02562 * 13 4 3 15 15 C 1.46422 * 120.00170 * 359.97438 * 13 4 3 16 16 C 1.34836 * 119.99936 * 173.32569 * 15 13 4 17 17 C 1.47314 * 120.00316 * 348.72140 * 16 15 13 18 18 C 1.40248 * 120.94028 * 315.32493 * 17 16 15 19 19 C 1.37917 * 118.99051 * 180.02562 * 18 17 16 20 20 N 1.31937 * 120.94621 * 359.97438 * 19 18 17 21 21 C 1.31976 * 122.11237 * 0.02562 * 20 19 18 22 22 Cl 1.73593 * 119.55431 * 179.97438 * 21 20 19 23 23 C 1.38167 * 120.89004 * 359.71304 * 21 20 19 24 24 H 4.40642 * 5.51517 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47220 * 281.33393 * 3 2 1 26 26 H 1.08997 * 109.47206 * 161.34020 * 3 2 1 27 27 H 0.96997 * 120.00249 * 180.02562 * 8 7 5 28 28 H 1.07998 * 119.99648 * 353.05227 * 15 13 4 29 29 H 1.07998 * 119.99698 * 168.72063 * 16 15 13 30 30 H 1.08001 * 120.50752 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.52191 * 179.97438 * 19 18 17 32 32 H 1.07994 * 120.52659 * 180.28737 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0362 -0.9122 5 6 3.5016 -2.2584 -0.4237 6 1 4.1736 -2.8866 -0.9896 7 6 3.0093 -2.6938 0.8033 8 7 2.0338 -2.0389 1.3889 9 14 3.7365 -4.2100 1.6166 10 1 4.8658 -3.8079 2.4932 11 1 2.6932 -4.8834 2.4309 12 1 4.2288 -5.1440 0.5722 13 6 3.2227 -0.7845 -2.2334 14 8 3.6285 -1.6462 -2.9915 15 6 2.8291 0.5250 -2.7570 16 6 3.0422 0.8241 -4.0543 17 6 3.8862 -0.0535 -4.8836 18 6 5.1079 -0.5449 -4.4011 19 6 5.8663 -1.3632 -5.2119 20 7 5.4569 -1.6848 -6.4243 21 6 4.3149 -1.2455 -6.9187 22 17 3.8412 -1.7101 -8.5229 23 6 3.4886 -0.4252 -6.1748 24 1 -1.0499 -0.0002 -0.0004 25 1 3.0094 -0.2011 1.0076 26 1 3.0089 0.9744 -0.3288 27 1 1.6909 -2.3420 2.2441 28 1 2.3642 1.2497 -2.1050 29 1 2.5941 1.7071 -4.4855 30 1 5.4501 -0.2859 -3.4101 31 1 6.8087 -1.7462 -4.8492 32 1 2.5532 -0.0729 -6.5835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490960734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:28 Heat of formation + Delta-G solvation = 77.619558 kcal Electronic energy + Delta-G solvation = -19944.268562 eV Core-core repulsion = 16705.406981 eV Total energy + Delta-G solvation = -3238.861581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29096 -40.28116 -37.66525 -37.20807 -35.25534 -34.04191 -33.03058 -32.01569 -31.54249 -28.37212 -26.99981 -25.14945 -24.42645 -22.78220 -20.05325 -19.64178 -18.78315 -18.20875 -17.46612 -17.37886 -16.81533 -16.42229 -15.83949 -15.71636 -15.42137 -15.04859 -14.58358 -14.40584 -14.11203 -14.02424 -13.38262 -13.20711 -12.84956 -12.80611 -12.66901 -12.50606 -12.29950 -12.19236 -11.38300 -11.27899 -11.06203 -10.63557 -10.61365 -10.31802 -10.00243 -9.76475 -9.34345 -8.33533 -5.95484 -0.29211 0.13117 0.81068 0.92224 1.40909 1.41866 1.51605 2.04858 2.29083 2.39004 2.53949 2.79933 3.15549 3.26237 3.51964 3.74846 3.89456 4.06047 4.10964 4.15847 4.30162 4.59063 4.68108 4.73124 4.83743 5.03768 5.08920 5.28190 5.42205 5.45098 5.52639 5.61765 6.09167 6.46080 6.80089 7.13704 7.16340 7.40906 8.02250 8.62362 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.004552 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.811304 B = 6149.343572 C = 6944.604436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.150 4.150 3 C 0.230 3.770 4 N -0.437 5.437 5 C -0.335 4.335 6 H 0.078 0.922 7 C 0.002 3.998 8 N -0.872 5.872 9 Si 0.985 3.015 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.451 3.549 14 O -0.611 6.611 15 C -0.169 4.169 16 C -0.062 4.062 17 C -0.001 4.001 18 C -0.088 4.088 19 C 0.090 3.910 20 N -0.505 5.505 21 C 0.147 3.853 22 Cl -0.037 7.037 23 C -0.146 4.146 24 H 0.231 0.769 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.273 0.727 28 H 0.151 0.849 29 H 0.183 0.817 30 H 0.128 0.872 31 H 0.175 0.825 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 9.175 -6.966 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.151 4.151 3 C 0.108 3.892 4 N -0.152 5.152 5 C -0.464 4.464 6 H 0.096 0.904 7 C -0.202 4.202 8 N -0.509 5.509 9 Si 0.809 3.191 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.244 3.756 14 O -0.500 6.500 15 C -0.190 4.190 16 C -0.082 4.082 17 C -0.009 4.009 18 C -0.108 4.108 19 C -0.065 4.065 20 N -0.217 5.217 21 C -0.017 4.017 22 Cl -0.009 7.009 23 C -0.166 4.166 24 H 0.247 0.753 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.169 0.831 29 H 0.200 0.800 30 H 0.145 0.855 31 H 0.192 0.808 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.375 8.132 -7.716 11.294 hybrid contribution -0.621 -0.801 1.161 1.541 sum 0.754 7.330 -6.555 9.863 Atomic orbital electron populations 1.25140 0.96402 1.02912 1.02424 1.23456 0.94980 0.98005 0.98701 1.18442 0.84451 0.90132 0.96163 1.43834 1.53897 1.12251 1.05218 1.19593 1.26882 0.95897 1.03993 0.90428 1.26035 0.95242 1.01298 0.97628 1.70019 1.22984 1.40575 1.17323 0.85052 0.78178 0.77898 0.77957 1.18775 1.20432 1.20574 1.18942 0.84727 0.90095 0.81873 1.90682 1.52999 1.49966 1.56342 1.23309 1.03133 0.95523 0.97020 1.22449 0.95025 0.98772 0.91949 1.19471 0.93784 0.95082 0.92584 1.22232 0.94307 0.95531 0.98769 1.22626 1.00496 0.95449 0.87939 1.66767 1.15872 1.23272 1.15772 1.21526 0.93104 0.97791 0.89323 1.98357 1.90131 1.91766 1.20635 1.22050 1.01209 0.99543 0.93839 0.75275 0.88410 0.88307 0.91679 0.83126 0.80006 0.85453 0.80778 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.33 19.25 74.32 1.43 -7.90 16 2 C -0.15 -6.15 11.00 31.13 0.34 -5.81 16 3 C 0.23 9.36 4.78 84.57 0.40 9.76 16 4 N -0.44 -20.70 2.59 -650.29 -1.69 -22.39 16 5 C -0.34 -17.78 9.30 84.17 0.78 -17.00 16 6 H 0.08 4.43 7.39 -2.91 -0.02 4.41 16 7 C 0.00 0.08 5.09 85.00 0.43 0.52 16 8 N -0.87 -43.29 9.11 21.70 0.20 -43.09 16 9 Si 0.98 40.84 29.57 68.60 2.03 42.87 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 11 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 13 C 0.45 20.11 6.61 86.37 0.57 20.68 16 14 O -0.61 -31.01 11.93 -4.46 -0.05 -31.07 16 15 C -0.17 -5.48 8.92 23.62 0.21 -5.27 16 16 C -0.06 -1.67 9.86 23.88 0.24 -1.43 16 17 C 0.00 -0.03 4.50 -19.94 -0.09 -0.12 16 18 C -0.09 -3.04 6.76 22.68 0.15 -2.88 16 19 C 0.09 3.03 11.17 84.60 0.94 3.98 16 20 N -0.50 -17.93 10.32 -187.01 -1.93 -19.86 16 21 C 0.15 4.81 7.27 84.65 0.62 5.43 16 22 Cl -0.04 -1.03 29.10 -2.72 -0.08 -1.11 16 23 C -0.15 -4.37 9.67 22.71 0.22 -4.15 16 24 H 0.23 6.63 7.80 -4.42 -0.03 6.59 16 25 H 0.10 4.31 6.34 -2.39 -0.02 4.30 16 26 H 0.10 3.15 6.63 -2.39 -0.02 3.14 16 27 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 28 H 0.15 4.11 6.21 -2.91 -0.02 4.09 16 29 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 30 H 0.13 4.46 7.23 -2.91 -0.02 4.44 16 31 H 0.18 4.97 8.06 -2.91 -0.02 4.95 16 32 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -65.30 302.19 5.89 -59.41 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.15 Total: 19.43 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 6.25 Total: -4.20 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -3.42 Total: -85.34 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -65.30 5.89 -59.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.032 kcal (2) G-P(sol) polarization free energy of solvation -65.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds