Wall clock time and date at job start Tue Mar 31 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46927 * 216.46748 * 3 2 1 5 5 C 1.36726 * 120.00092 * 262.38314 * 4 3 2 6 6 H 1.07997 * 120.00218 * 212.74283 * 5 4 3 7 7 C 1.39122 * 119.99773 * 32.73871 * 5 4 3 8 8 N 1.31323 * 120.00018 * 5.87415 * 7 5 4 9 9 Si 1.86796 * 119.99769 * 185.87319 * 7 5 4 10 10 H 1.48502 * 109.47362 * 89.99724 * 9 7 5 11 11 H 1.48500 * 109.47246 * 210.00163 * 9 7 5 12 12 H 1.48501 * 109.47233 * 330.00228 * 9 7 5 13 13 C 1.34778 * 120.00151 * 82.38327 * 4 3 2 14 14 O 1.21759 * 120.00139 * 179.97438 * 13 4 3 15 15 C 1.46193 * 119.99611 * 0.02562 * 13 4 3 16 16 C 1.35014 * 119.99635 * 186.76944 * 15 13 4 17 17 C 1.47104 * 120.00212 * 15.04777 * 16 15 13 18 18 C 1.40360 * 120.57233 * 218.09069 * 17 16 15 19 19 C 1.38188 * 118.27891 * 179.75050 * 18 17 16 20 20 C 1.38593 * 119.32440 * 0.55190 * 19 18 17 21 21 Cl 1.73609 * 119.43989 * 179.70734 * 20 19 18 22 22 N 1.32053 * 121.11838 * 359.43170 * 20 19 18 23 23 C 1.31654 * 121.88437 * 0.27350 * 22 20 19 24 24 H 4.40639 * 5.51510 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46904 * 96.46854 * 3 2 1 26 26 H 1.08997 * 109.47544 * 336.46658 * 3 2 1 27 27 H 0.97001 * 119.99833 * 180.02562 * 8 7 5 28 28 H 1.08000 * 120.00415 * 6.76605 * 15 13 4 29 29 H 1.07999 * 119.99651 * 195.04584 * 16 15 13 30 30 H 1.07995 * 120.85643 * 0.02562 * 18 17 16 31 31 H 1.08000 * 120.33475 * 180.27926 * 19 18 17 32 32 H 1.08007 * 119.72991 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1117 0.8210 5 6 3.5091 2.2857 0.2292 6 1 4.3079 2.8742 0.6556 7 6 2.8620 2.7221 -0.9225 8 7 1.8169 2.0688 -1.3760 9 14 3.4796 4.2372 -1.8236 10 1 4.4842 3.8335 -2.8400 11 1 2.3402 4.9128 -2.4949 12 1 4.1057 5.1700 -0.8524 13 6 3.2126 0.9765 2.1596 14 8 3.6184 1.8997 2.8419 15 6 2.8118 -0.2790 2.7923 16 6 2.7601 -0.3701 4.1384 17 6 2.7783 0.8503 4.9595 18 6 3.4827 0.8838 6.1731 19 6 3.4723 2.0566 6.9039 20 6 2.7642 3.1479 6.4261 21 17 2.7427 4.6203 7.3456 22 7 2.1099 3.0884 5.2806 23 6 2.0938 1.9969 4.5447 24 1 -1.0502 -0.0001 -0.0003 25 1 3.0092 0.1166 -1.0211 26 1 3.0098 -0.9413 0.4103 27 1 1.3659 2.3729 -2.1792 28 1 2.5571 -1.1336 2.1831 29 1 2.7053 -1.3390 4.6123 30 1 4.0226 0.0169 6.5243 31 1 4.0069 2.1206 7.8401 32 1 1.5475 1.9869 3.6131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:26 Heat of formation + Delta-G solvation = 74.884133 kcal Electronic energy + Delta-G solvation = -20069.961293 eV Core-core repulsion = 16830.981096 eV Total energy + Delta-G solvation = -3238.980198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.33781 -40.24312 -37.68810 -37.11493 -35.01353 -33.99845 -33.17231 -32.98024 -30.68063 -28.27741 -26.94166 -25.14677 -24.45374 -22.78422 -19.97716 -19.56106 -18.64296 -18.35614 -18.11705 -17.43367 -16.77695 -16.12929 -15.88932 -15.49456 -15.33310 -14.89911 -14.50904 -14.18648 -14.16282 -13.98990 -13.56257 -13.38347 -12.94301 -12.87552 -12.65163 -12.44983 -12.31395 -12.21878 -11.27046 -11.09249 -11.00380 -10.71465 -10.63203 -10.45918 -10.20799 -9.66762 -9.03937 -8.30581 -6.04028 -0.43452 0.36426 0.81247 0.88921 1.36794 1.39489 1.48860 2.09374 2.29881 2.44349 2.58029 2.82076 3.14045 3.30274 3.56797 3.79605 3.92445 4.01411 4.04244 4.19914 4.29718 4.53758 4.73815 4.81128 4.90195 4.96797 5.10220 5.32478 5.40991 5.46402 5.48514 5.69317 6.14394 6.48512 6.85454 7.15496 7.22358 7.40323 8.02727 8.64676 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.005184 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.892524 B = 5399.819903 C = 6415.682431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.145 4.145 3 C 0.233 3.767 4 N -0.440 5.440 5 C -0.339 4.339 6 H 0.068 0.932 7 C 0.006 3.994 8 N -0.870 5.870 9 Si 0.980 3.020 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.284 1.284 13 C 0.461 3.539 14 O -0.613 6.613 15 C -0.189 4.189 16 C -0.042 4.042 17 C -0.110 4.110 18 C -0.045 4.045 19 C -0.163 4.163 20 C 0.151 3.849 21 Cl -0.043 7.043 22 N -0.530 5.530 23 C 0.186 3.814 24 H 0.227 0.773 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.271 0.729 28 H 0.155 0.845 29 H 0.189 0.811 30 H 0.190 0.810 31 H 0.176 0.824 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -8.937 11.102 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.146 4.146 3 C 0.111 3.889 4 N -0.156 5.156 5 C -0.468 4.468 6 H 0.086 0.914 7 C -0.199 4.199 8 N -0.506 5.506 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.209 1.209 13 C 0.254 3.746 14 O -0.501 6.501 15 C -0.210 4.210 16 C -0.063 4.063 17 C -0.113 4.113 18 C -0.070 4.070 19 C -0.183 4.183 20 C -0.011 4.011 21 Cl -0.015 7.015 22 N -0.242 5.242 23 C 0.028 3.972 24 H 0.244 0.756 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.173 0.827 29 H 0.206 0.794 30 H 0.207 0.793 31 H 0.193 0.807 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.471 -7.583 10.970 13.344 hybrid contribution 0.250 0.917 -0.866 1.286 sum 0.721 -6.666 10.104 12.126 Atomic orbital electron populations 1.25031 0.96294 1.03010 1.02580 1.23317 0.94840 0.97860 0.98617 1.18332 0.84587 0.89025 0.96915 1.43739 1.54547 1.12556 1.04805 1.19393 1.17511 1.00345 1.09504 0.91446 1.26081 0.94743 1.00693 0.98343 1.69974 1.17826 1.40044 1.22743 0.85130 0.78050 0.78221 0.78127 1.18579 1.20307 1.20916 1.19024 0.83849 0.89549 0.82172 1.90672 1.53138 1.44104 1.62196 1.23328 1.03705 0.97515 0.96454 1.22478 0.94912 0.97042 0.91877 1.20209 0.99139 0.95586 0.96331 1.22111 0.94862 0.98805 0.91263 1.21962 1.01128 0.91755 1.03477 1.22013 0.97796 0.89298 0.92020 1.98355 1.97325 1.35688 1.70150 1.66704 1.21942 1.29281 1.06300 1.22401 0.94312 0.86693 0.93797 0.75617 0.89673 0.87827 0.91832 0.82741 0.79401 0.79326 0.80672 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.68 19.23 74.32 1.43 -8.25 16 2 C -0.14 -6.08 10.81 31.13 0.34 -5.75 16 3 C 0.23 9.71 4.80 84.57 0.41 10.11 16 4 N -0.44 -21.69 2.57 -650.50 -1.67 -23.36 16 5 C -0.34 -18.80 9.05 84.14 0.76 -18.04 16 6 H 0.07 4.05 7.59 -2.91 -0.02 4.03 16 7 C 0.01 0.29 5.15 84.98 0.44 0.73 16 8 N -0.87 -45.05 9.34 21.69 0.20 -44.84 16 9 Si 0.98 43.02 29.56 68.60 2.03 45.05 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.46 21.40 6.34 86.31 0.55 21.94 16 14 O -0.61 -32.76 12.05 -4.54 -0.05 -32.81 16 15 C -0.19 -6.26 8.87 23.60 0.21 -6.05 16 16 C -0.04 -1.13 9.86 23.86 0.24 -0.89 16 17 C -0.11 -3.56 4.67 -20.05 -0.09 -3.66 16 18 C -0.05 -1.12 9.95 22.77 0.23 -0.90 16 19 C -0.16 -4.27 9.85 22.34 0.22 -4.05 16 20 C 0.15 5.21 7.27 84.74 0.62 5.83 16 21 Cl -0.04 -1.31 29.10 -2.72 -0.08 -1.39 16 22 N -0.53 -22.40 10.32 -185.30 -1.91 -24.31 16 23 C 0.19 7.74 7.82 85.10 0.67 8.40 16 24 H 0.23 6.93 7.80 -4.41 -0.03 6.90 16 25 H 0.09 3.81 6.98 -2.39 -0.02 3.79 16 26 H 0.10 3.34 6.46 -2.39 -0.02 3.32 16 27 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 28 H 0.16 4.15 6.24 -2.91 -0.02 4.13 16 29 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.12 5.73 6.70 -2.91 -0.02 5.71 16 Total: -1.00 -72.22 302.17 5.66 -66.56 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.15 Total: 15.68 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 6.00 Total: -0.57 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -3.38 Total: -92.52 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.05 Total: -32.81 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -72.22 5.66 -66.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.442 kcal (2) G-P(sol) polarization free energy of solvation -72.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds