Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48507 * 109.47034 * 269.99929 * 3 2 1 5 5 H 1.48500 * 109.47381 * 29.99740 * 3 2 1 6 6 H 1.48499 * 109.47407 * 150.00144 * 3 2 1 7 7 C 1.37878 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99345 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46877 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00351 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47306 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47289 * 180.02562 * 12 11 10 14 14 S 1.65593 * 120.00245 * 165.00019 * 13 12 11 15 15 O 1.42095 * 106.40441 * 178.54314 * 14 13 12 16 16 O 1.42107 * 106.40414 * 311.46258 * 14 13 12 17 17 C 1.76199 * 107.21807 * 65.00204 * 14 13 12 18 18 C 1.33382 * 125.20585 * 89.99841 * 17 14 13 19 19 C 1.38426 * 114.92494 * 179.97438 * 18 17 14 20 20 C 1.33388 * 114.92040 * 359.97438 * 19 18 17 21 21 S 1.75886 * 125.20104 * 269.69374 * 17 14 13 22 22 H 0.97000 * 120.00251 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47181 * 60.00121 * 9 7 2 24 24 H 1.09001 * 109.46953 * 299.99503 * 9 7 2 25 25 H 1.00903 * 111.00181 * 303.95707 * 10 9 7 26 26 H 1.09001 * 109.46881 * 60.00316 * 11 10 9 27 27 H 1.08996 * 109.47393 * 299.99997 * 11 10 9 28 28 H 1.09001 * 109.47289 * 60.00085 * 12 11 10 29 29 H 1.09004 * 109.47261 * 300.00341 * 12 11 10 30 30 H 0.97000 * 119.99344 * 345.00347 * 13 12 11 31 31 H 1.08001 * 122.54239 * 359.96104 * 18 17 14 32 32 H 1.07995 * 122.54141 * 180.02562 * 19 18 17 33 33 H 1.07997 * 125.20418 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5055 -4.9070 0.0024 12 6 2.5304 -6.0429 0.0031 13 7 1.8321 -7.3308 0.0031 14 16 2.6552 -8.7191 -0.3674 15 8 1.7214 -9.7834 -0.2477 16 8 3.3786 -8.4504 -1.5608 17 6 3.8566 -8.9665 0.8975 18 6 3.6583 -9.6557 2.0221 19 6 4.7510 -9.7157 2.8699 20 6 5.8368 -9.0756 2.4334 21 16 5.5031 -8.3488 0.8668 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8903 25 1 2.8412 -3.5489 -0.7791 26 1 0.8810 -4.9821 -0.8878 27 1 0.8802 -4.9809 0.8921 28 1 3.1553 -5.9680 0.8930 29 1 3.1554 -5.9689 -0.8869 30 1 0.8875 -7.3703 0.2201 31 1 2.7166 -10.1309 2.2539 32 1 4.7265 -10.2416 3.8128 33 1 6.7780 -9.0160 2.9596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567688560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -41.694876 kcal Electronic energy + Delta-G solvation = -18103.589567 eV Core-core repulsion = 14997.041782 eV Total energy + Delta-G solvation = -3106.547785 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.14588 -37.33301 -36.58636 -36.01226 -34.29263 -32.30746 -30.20433 -28.45847 -25.50955 -24.74573 -22.17034 -21.45825 -20.62326 -19.44173 -18.75232 -17.54537 -16.55821 -16.30268 -16.01866 -15.41994 -15.07661 -14.76916 -14.43274 -13.80603 -13.45853 -13.27154 -13.05297 -12.86043 -12.70695 -12.30415 -12.22953 -12.15592 -11.73315 -11.71042 -11.29896 -11.13341 -11.02947 -10.74361 -10.64907 -9.96454 -9.70552 -9.56987 -9.22717 -8.86281 -8.52154 -7.42501 -6.06854 -4.09167 0.06083 0.33920 1.14455 1.49478 2.14703 2.89391 3.30260 3.36398 3.40702 3.55019 4.33897 4.41215 4.55230 4.92693 4.98154 5.01835 5.19072 5.29493 5.34295 5.46163 5.64931 5.67567 5.82230 5.92147 6.20070 6.31926 6.83577 7.16474 7.35032 7.72496 8.06319 8.28634 8.52219 8.99650 9.55992 11.04275 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.003265 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.024045 B = 8572.835202 C = 9207.867175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.688 5.688 11 C 0.054 3.946 12 C 0.115 3.885 13 N -1.111 6.111 14 S 2.724 3.276 15 O -0.957 6.957 16 O -0.951 6.951 17 C -0.794 4.794 18 C 0.006 3.994 19 C -0.166 4.166 20 C -0.176 4.176 21 S 0.224 5.776 22 H 0.262 0.738 23 H -0.011 1.011 24 H 0.029 0.971 25 H 0.332 0.668 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.420 0.580 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.034 -20.548 4.641 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.320 5.320 11 C -0.078 4.078 12 C -0.011 4.011 13 N -0.873 5.873 14 S 2.808 3.192 15 O -0.947 6.947 16 O -0.941 6.941 17 C -0.995 4.995 18 C -0.029 4.029 19 C -0.196 4.196 20 C -0.314 4.314 21 S 0.490 5.510 22 H 0.071 0.929 23 H 0.007 0.993 24 H 0.047 0.953 25 H 0.148 0.852 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.255 0.745 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.914 -20.043 3.543 22.640 hybrid contribution -0.783 0.205 1.035 1.314 sum 9.132 -19.838 4.578 22.313 Atomic orbital electron populations 1.69958 1.06114 1.26889 1.50756 1.24995 0.94888 0.99437 0.95260 0.86463 0.79765 0.82893 0.78066 1.20687 1.21247 1.19739 1.21176 0.93582 0.90146 1.50566 0.91827 1.19575 0.90534 0.87148 0.95977 1.60633 1.21328 1.00845 1.49166 1.21992 0.95059 0.89891 1.00827 1.21402 0.95596 0.81577 1.02536 1.55386 1.21965 1.21527 1.88395 1.01099 0.72756 0.72259 0.73048 1.93590 1.61115 1.53201 1.86817 1.93613 1.73808 1.84783 1.41864 1.35970 1.18468 1.21537 1.23501 1.20041 1.00184 0.92668 0.90053 1.20428 0.92683 1.04100 1.02440 1.26299 1.03395 1.01924 0.99815 1.84399 1.01903 1.49623 1.15054 0.92853 0.99348 0.95285 0.85184 0.95301 0.91002 0.90813 0.90385 0.74477 0.82812 0.83349 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.35 9.32 -34.44 -0.32 -14.67 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 4.96 5.44 -4.97 -0.03 4.93 16 10 N -0.69 -13.97 6.49 -115.06 -0.75 -14.72 16 11 C 0.05 0.87 5.83 -3.83 -0.02 0.85 16 12 C 0.12 1.50 6.48 -4.04 -0.03 1.47 16 13 N -1.11 -12.42 6.00 -10.61 -0.06 -12.48 16 14 S 2.72 32.85 5.88 -107.50 -0.63 32.22 16 15 O -0.96 -13.21 17.80 -57.17 -1.02 -14.23 16 16 O -0.95 -14.13 17.38 -57.17 -0.99 -15.13 16 17 C -0.79 -8.50 6.55 29.04 0.19 -8.31 16 18 C 0.01 0.06 9.84 -41.21 -0.41 -0.35 16 19 C -0.17 -1.28 10.18 -41.21 -0.42 -1.70 16 20 C -0.18 -1.34 11.23 29.04 0.33 -1.02 16 21 S 0.22 2.21 23.21 -107.50 -2.50 -0.29 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.33 6.38 8.72 -39.29 -0.34 6.04 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 30 H 0.42 3.97 8.65 -34.47 -0.30 3.67 16 31 H 0.15 1.15 8.05 -52.49 -0.42 0.73 16 32 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -33.87 317.35 -10.22 -44.09 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.97 Total: 2.50 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.80 Total: -17.33 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.07 Total: -52.98 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -2.01 Total: -29.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 35.06 SS G_CDS: -3.13 Total: 31.93 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.87 -10.22 -44.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567688560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.395 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds