Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48507 * 109.47034 * 269.99929 * 3 2 1 5 5 H 1.48500 * 109.47381 * 29.99740 * 3 2 1 6 6 H 1.48499 * 109.47407 * 150.00144 * 3 2 1 7 7 C 1.37878 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99345 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46877 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00351 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47306 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47289 * 180.02562 * 12 11 10 14 14 S 1.65593 * 120.00245 * 165.00019 * 13 12 11 15 15 O 1.42095 * 106.40441 * 178.54314 * 14 13 12 16 16 O 1.42107 * 106.40414 * 311.46258 * 14 13 12 17 17 C 1.76199 * 107.21807 * 65.00204 * 14 13 12 18 18 C 1.33382 * 125.20585 * 89.99841 * 17 14 13 19 19 C 1.38426 * 114.92494 * 179.97438 * 18 17 14 20 20 C 1.33388 * 114.92040 * 359.97438 * 19 18 17 21 21 S 1.75886 * 125.20104 * 269.69374 * 17 14 13 22 22 H 0.97000 * 120.00251 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47181 * 60.00121 * 9 7 2 24 24 H 1.09001 * 109.46953 * 299.99503 * 9 7 2 25 25 H 1.00903 * 111.00181 * 303.95707 * 10 9 7 26 26 H 1.09001 * 109.46881 * 60.00316 * 11 10 9 27 27 H 1.08996 * 109.47393 * 299.99997 * 11 10 9 28 28 H 1.09001 * 109.47289 * 60.00085 * 12 11 10 29 29 H 1.09004 * 109.47261 * 300.00341 * 12 11 10 30 30 H 0.97000 * 119.99344 * 345.00347 * 13 12 11 31 31 H 1.08001 * 122.54239 * 359.96104 * 18 17 14 32 32 H 1.07995 * 122.54141 * 180.02562 * 19 18 17 33 33 H 1.07997 * 125.20418 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5055 -4.9070 0.0024 12 6 2.5304 -6.0429 0.0031 13 7 1.8321 -7.3308 0.0031 14 16 2.6552 -8.7191 -0.3674 15 8 1.7214 -9.7834 -0.2477 16 8 3.3786 -8.4504 -1.5608 17 6 3.8566 -8.9665 0.8975 18 6 3.6583 -9.6557 2.0221 19 6 4.7510 -9.7157 2.8699 20 6 5.8368 -9.0756 2.4334 21 16 5.5031 -8.3488 0.8668 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8903 25 1 2.8412 -3.5489 -0.7791 26 1 0.8810 -4.9821 -0.8878 27 1 0.8802 -4.9809 0.8921 28 1 3.1553 -5.9680 0.8930 29 1 3.1554 -5.9689 -0.8869 30 1 0.8875 -7.3703 0.2201 31 1 2.7166 -10.1309 2.2539 32 1 4.7265 -10.2416 3.8128 33 1 6.7780 -9.0160 2.9596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567688560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -69.152425 kcal Electronic energy + Delta-G solvation = -18104.780216 eV Core-core repulsion = 14997.041782 eV Total energy + Delta-G solvation = -3107.738434 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.84432 -38.36321 -37.92524 -37.07074 -35.84525 -34.23476 -30.88362 -30.09648 -27.25665 -25.42731 -23.81395 -23.06877 -21.43130 -20.21194 -19.62173 -18.75215 -18.31289 -17.37089 -16.96802 -16.85722 -16.40173 -16.01701 -15.56066 -15.19538 -14.66919 -14.47821 -14.19147 -13.88833 -13.77715 -13.54351 -13.30383 -13.26403 -13.24167 -13.02040 -12.69580 -12.61967 -12.49902 -12.28777 -11.90388 -11.82358 -11.28823 -10.67408 -10.58637 -10.33852 -9.57835 -9.16714 -8.21346 -6.32175 -0.78729 -0.45080 0.41409 0.84602 1.44007 1.45155 1.50690 1.56983 1.96199 2.42153 2.61740 3.12723 3.35625 3.69050 3.85149 4.03203 4.15959 4.33101 4.41638 4.51721 4.57873 4.86291 4.92269 5.03635 5.05333 5.13484 5.28199 5.32198 5.62572 5.95866 6.02691 6.40808 6.70833 6.89450 7.38830 8.90281 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.003265 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.024045 B = 8572.835202 C = 9207.867175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.207 3.793 10 N -0.686 5.686 11 C 0.054 3.946 12 C 0.126 3.874 13 N -1.105 6.105 14 S 2.742 3.258 15 O -0.977 6.977 16 O -0.983 6.983 17 C -0.814 4.814 18 C 0.011 3.989 19 C -0.172 4.172 20 C -0.158 4.158 21 S 0.186 5.814 22 H 0.265 0.735 23 H -0.037 1.037 24 H 0.004 0.996 25 H 0.339 0.661 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.428 0.572 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.590 -20.967 5.995 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.079 3.921 10 N -0.317 5.317 11 C -0.077 4.077 12 C 0.000 4.000 13 N -0.868 5.868 14 S 2.830 3.170 15 O -0.967 6.967 16 O -0.973 6.973 17 C -1.018 5.018 18 C -0.026 4.026 19 C -0.202 4.202 20 C -0.295 4.295 21 S 0.451 5.549 22 H 0.074 0.926 23 H -0.019 1.019 24 H 0.023 0.977 25 H 0.156 0.844 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.265 0.735 31 H 0.186 0.814 32 H 0.197 0.803 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 11.451 -20.485 4.874 23.969 hybrid contribution -1.250 0.225 0.695 1.448 sum 10.201 -20.259 5.569 23.356 Atomic orbital electron populations 1.70086 1.07820 1.28013 1.51570 1.25949 0.95770 1.03409 0.94614 0.85327 0.78550 0.77960 0.78415 1.19831 1.20860 1.18706 1.21571 0.93990 0.91348 1.50540 0.91432 1.19232 0.90630 0.88682 0.93552 1.60465 1.20514 1.01174 1.49577 1.22038 0.95805 0.88988 1.00896 1.21194 0.94647 0.80951 1.03245 1.55189 1.22517 1.20635 1.88471 1.00186 0.72328 0.71707 0.72731 1.93559 1.62066 1.53831 1.87248 1.93568 1.74388 1.85148 1.44216 1.35587 1.18389 1.23858 1.23941 1.20441 1.01349 0.91323 0.89461 1.20771 0.91950 1.04179 1.03325 1.26703 1.04623 1.00166 0.98055 1.84539 1.01948 1.50886 1.17487 0.92637 1.01902 0.97748 0.84391 0.95446 0.90741 0.89676 0.90282 0.73496 0.81421 0.80311 0.77835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -29.97 9.32 25.60 0.24 -29.74 16 8 H 0.07 3.64 7.81 -2.91 -0.02 3.61 16 9 C 0.21 10.80 5.44 85.56 0.47 11.26 16 10 N -0.69 -27.88 6.49 -517.95 -3.36 -31.24 16 11 C 0.05 1.73 5.83 86.30 0.50 2.24 16 12 C 0.13 3.19 6.48 86.38 0.56 3.75 16 13 N -1.11 -24.06 6.00 -187.48 -1.12 -25.18 16 14 S 2.74 65.28 5.88 -56.49 -0.33 64.95 16 15 O -0.98 -26.59 17.80 -128.00 -2.28 -28.87 16 16 O -0.98 -29.47 17.38 -128.00 -2.22 -31.69 16 17 C -0.81 -16.52 6.55 66.72 0.44 -16.08 16 18 C 0.01 0.17 9.84 21.22 0.21 0.38 16 19 C -0.17 -2.11 10.18 21.22 0.22 -1.89 16 20 C -0.16 -1.93 11.23 66.72 0.75 -1.18 16 21 S 0.19 3.45 23.21 -56.49 -1.31 2.13 16 22 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 23 H -0.04 -2.06 8.14 -2.39 -0.02 -2.08 16 24 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.34 12.97 8.72 -89.69 -0.78 12.19 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 2.01 7.75 -2.38 -0.02 1.99 16 30 H 0.43 7.82 8.65 -96.75 -0.84 6.99 16 31 H 0.17 2.15 8.05 -2.91 -0.02 2.12 16 32 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 33 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -72.55 317.35 -4.96 -77.51 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.48 Total: 13.09 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.84 Total: -30.75 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.20 Total: -111.98 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -4.50 Total: -60.56 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 68.73 SS G_CDS: -1.64 Total: 67.08 kcal Total: -72.55 -4.96 -77.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567688560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.356 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds