Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48501 * 109.46705 * 269.99791 * 3 2 1 5 5 H 1.48499 * 109.47092 * 29.99253 * 3 2 1 6 6 H 1.48498 * 109.47365 * 149.99468 * 3 2 1 7 7 C 1.37875 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99749 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00572 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47519 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99801 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46767 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.46841 * 65.00118 * 12 11 10 14 14 C 1.35720 * 116.99999 * 179.97438 * 13 12 11 15 15 N 1.32236 * 119.67549 * 0.02562 * 14 13 12 16 16 C 1.31954 * 121.67823 * 179.97438 * 15 14 13 17 17 C 1.38195 * 120.83218 * 359.97438 * 16 15 14 18 18 Cl 1.73601 * 120.36034 * 180.02562 * 17 16 15 19 19 C 1.38880 * 119.27460 * 359.97438 * 17 16 15 20 20 C 1.38500 * 118.45911 * 0.02562 * 19 17 16 21 21 Cl 1.73606 * 120.44064 * 180.02562 * 20 19 17 22 22 H 0.96993 * 119.99993 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.46423 * 60.00702 * 9 7 2 24 24 H 1.09001 * 109.47118 * 300.00894 * 9 7 2 25 25 H 1.00895 * 110.99663 * 56.04965 * 10 9 7 26 26 H 1.08997 * 109.47296 * 60.00856 * 11 10 9 27 27 H 1.09004 * 109.47217 * 299.99625 * 11 10 9 28 28 H 1.08993 * 109.47327 * 305.00304 * 12 11 10 29 29 H 1.08997 * 109.47252 * 184.99739 * 12 11 10 30 30 H 1.07993 * 119.58342 * 180.27280 * 16 15 14 31 31 H 1.07996 * 120.76626 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4698 -2.6181 0.0022 12 6 5.9412 -4.0737 0.0014 13 8 5.5472 -4.7012 -1.2206 14 6 5.8908 -6.0042 -1.3828 15 7 6.5598 -6.6286 -0.4283 16 6 6.9134 -7.8946 -0.5442 17 6 6.5936 -8.6184 -1.6772 18 17 7.0644 -10.2835 -1.8166 19 6 5.8905 -7.9994 -2.7025 20 6 5.5344 -6.6697 -2.5496 21 17 4.6544 -5.8456 -3.7987 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8913 24 1 3.8753 -0.6803 -0.8888 25 1 3.6262 -3.0950 -0.7806 26 1 5.8460 -2.1146 0.8927 27 1 5.8474 -2.1138 -0.8874 28 1 5.4917 -4.6017 0.8423 29 1 7.0270 -4.1041 0.0917 30 1 7.4554 -8.3724 0.2584 31 1 5.6284 -8.5421 -3.5987 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569804322.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = -12.520689 kcal Electronic energy + Delta-G solvation = -17718.627507 eV Core-core repulsion = 14473.424302 eV Total energy + Delta-G solvation = -3245.203205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03702 -38.49401 -36.99448 -36.74641 -35.42224 -32.76281 -32.53357 -30.84433 -29.34854 -26.35540 -24.39476 -23.62847 -21.74748 -21.09696 -18.84667 -17.67052 -17.17667 -16.78223 -16.40316 -15.49443 -14.95490 -14.70625 -14.34693 -14.04238 -13.92552 -13.47008 -13.21033 -12.62085 -12.40951 -12.16260 -12.12026 -11.87498 -11.66681 -11.46505 -11.19178 -10.95544 -10.64981 -10.35200 -10.15728 -10.02729 -9.79470 -9.28746 -8.64379 -8.59919 -7.54204 -6.05369 -4.03446 0.44711 0.59063 1.47652 1.91495 2.73831 3.11307 3.28565 3.35894 3.38049 3.85111 4.21640 4.42010 4.42909 4.61238 4.87332 4.97615 5.18028 5.27423 5.35018 5.46557 5.58299 5.63794 5.99582 6.07482 6.74333 6.93135 7.00080 7.25540 7.58574 7.85019 8.30851 8.64288 9.02964 9.56157 11.08004 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.030405 B = 0.003137 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.673711 B = 8924.835231 C = 9353.016206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.680 5.680 11 C 0.056 3.944 12 C 0.072 3.928 13 O -0.283 6.283 14 C 0.351 3.649 15 N -0.511 5.511 16 C 0.163 3.837 17 C -0.127 4.127 18 Cl -0.048 7.048 19 C -0.024 4.024 20 C -0.104 4.104 21 Cl -0.024 7.024 22 H 0.264 0.736 23 H 0.027 0.973 24 H -0.019 1.019 25 H 0.342 0.658 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.175 0.825 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.215 -18.535 -5.075 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.311 5.311 11 C -0.074 4.074 12 C -0.003 4.003 13 O -0.188 6.188 14 C 0.171 3.829 15 N -0.236 5.236 16 C 0.005 3.995 17 C -0.157 4.157 18 Cl -0.020 7.020 19 C -0.050 4.050 20 C -0.135 4.135 21 Cl 0.005 6.995 22 H 0.074 0.926 23 H 0.045 0.955 24 H -0.002 1.002 25 H 0.160 0.840 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.192 0.808 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 17.022 -17.837 -3.924 24.966 hybrid contribution 0.395 0.634 -1.574 1.743 sum 17.417 -17.204 -5.498 25.091 Atomic orbital electron populations 1.69898 1.06164 1.26881 1.50960 1.24910 0.94763 0.98951 0.94738 0.86810 0.80302 0.83836 0.78449 1.20340 1.21148 1.19171 1.21053 0.88897 0.94857 1.50602 0.90276 1.20019 0.96788 0.84827 0.94794 1.60561 1.03681 1.17006 1.49893 1.22059 0.92084 0.92143 1.01146 1.23028 0.99456 0.93741 0.84104 1.86378 1.72638 1.18254 1.41554 1.19667 0.88933 0.86065 0.88242 1.67745 1.15966 1.10938 1.28911 1.22556 0.93841 0.87867 0.95206 1.21693 1.07092 0.88695 0.98231 1.98385 1.90813 1.14801 1.97979 1.21261 0.93389 0.91560 0.98830 1.20827 1.06154 0.93635 0.92850 1.98426 1.73384 1.77860 1.49866 0.92638 0.95517 1.00165 0.83992 0.89290 0.95095 0.90095 0.91292 0.80841 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.99 9.87 -34.44 -0.34 -15.33 16 8 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 9 C 0.16 4.01 4.51 -4.98 -0.02 3.99 16 10 N -0.68 -14.27 6.49 -115.05 -0.75 -15.01 16 11 C 0.06 0.91 6.11 -3.82 -0.02 0.88 16 12 C 0.07 1.00 5.65 37.16 0.21 1.21 16 13 O -0.28 -4.20 9.11 -18.87 -0.17 -4.37 16 14 C 0.35 4.62 7.49 -17.11 -0.13 4.49 16 15 N -0.51 -6.06 9.21 -13.27 -0.12 -6.18 16 16 C 0.16 1.48 10.98 -17.51 -0.19 1.29 16 17 C -0.13 -1.10 6.34 -39.36 -0.25 -1.35 16 18 Cl -0.05 -0.36 28.99 -51.86 -1.50 -1.86 16 19 C -0.02 -0.22 9.78 -39.25 -0.38 -0.61 16 20 C -0.10 -1.22 6.36 -39.21 -0.25 -1.47 16 21 Cl -0.02 -0.30 28.54 -51.86 -1.48 -1.78 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 23 H 0.03 0.66 7.20 -51.92 -0.37 0.29 16 24 H -0.02 -0.47 7.57 -51.93 -0.39 -0.86 16 25 H 0.34 7.26 8.28 -39.29 -0.33 6.94 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -31.35 305.08 -8.01 -39.37 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.21 Total: 0.36 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.48 Total: -4.99 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.10 Total: -48.36 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.17 Total: -4.37 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -2.98 Total: -3.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.35 -8.01 -39.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569804322.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.845 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds