Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48501 * 109.46705 * 269.99791 * 3 2 1 5 5 H 1.48499 * 109.47092 * 29.99253 * 3 2 1 6 6 H 1.48498 * 109.47365 * 149.99468 * 3 2 1 7 7 C 1.37875 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99749 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00572 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47519 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99801 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46767 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.46841 * 65.00118 * 12 11 10 14 14 C 1.35720 * 116.99999 * 179.97438 * 13 12 11 15 15 N 1.32236 * 119.67549 * 0.02562 * 14 13 12 16 16 C 1.31954 * 121.67823 * 179.97438 * 15 14 13 17 17 C 1.38195 * 120.83218 * 359.97438 * 16 15 14 18 18 Cl 1.73601 * 120.36034 * 180.02562 * 17 16 15 19 19 C 1.38880 * 119.27460 * 359.97438 * 17 16 15 20 20 C 1.38500 * 118.45911 * 0.02562 * 19 17 16 21 21 Cl 1.73606 * 120.44064 * 180.02562 * 20 19 17 22 22 H 0.96993 * 119.99993 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.46423 * 60.00702 * 9 7 2 24 24 H 1.09001 * 109.47118 * 300.00894 * 9 7 2 25 25 H 1.00895 * 110.99663 * 56.04965 * 10 9 7 26 26 H 1.08997 * 109.47296 * 60.00856 * 11 10 9 27 27 H 1.09004 * 109.47217 * 299.99625 * 11 10 9 28 28 H 1.08993 * 109.47327 * 305.00304 * 12 11 10 29 29 H 1.08997 * 109.47252 * 184.99739 * 12 11 10 30 30 H 1.07993 * 119.58342 * 180.27280 * 16 15 14 31 31 H 1.07996 * 120.76626 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4698 -2.6181 0.0022 12 6 5.9412 -4.0737 0.0014 13 8 5.5472 -4.7012 -1.2206 14 6 5.8908 -6.0042 -1.3828 15 7 6.5598 -6.6286 -0.4283 16 6 6.9134 -7.8946 -0.5442 17 6 6.5936 -8.6184 -1.6772 18 17 7.0644 -10.2835 -1.8166 19 6 5.8905 -7.9994 -2.7025 20 6 5.5344 -6.6697 -2.5496 21 17 4.6544 -5.8456 -3.7987 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8913 24 1 3.8753 -0.6803 -0.8888 25 1 3.6262 -3.0950 -0.7806 26 1 5.8460 -2.1146 0.8927 27 1 5.8474 -2.1138 -0.8874 28 1 5.4917 -4.6017 0.8423 29 1 7.0270 -4.1041 0.0917 30 1 7.4554 -8.3724 0.2584 31 1 5.6284 -8.5421 -3.5987 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569804322.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = -35.667955 kcal Electronic energy + Delta-G solvation = -17719.631248 eV Core-core repulsion = 14473.424302 eV Total energy + Delta-G solvation = -3246.206946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.89806 -39.47152 -37.80015 -37.56640 -37.00853 -34.62182 -33.56457 -32.01651 -30.66908 -28.09112 -25.32581 -24.48909 -23.35999 -22.68916 -19.77639 -19.04092 -18.43394 -17.96207 -17.47232 -16.79090 -16.25719 -16.07144 -15.58533 -15.41625 -14.85028 -14.84788 -14.37451 -14.09348 -13.78769 -13.47007 -13.23864 -13.06798 -12.87451 -12.60756 -12.57769 -12.11781 -12.00127 -11.89058 -11.74642 -11.46701 -10.98741 -10.82507 -10.82231 -9.49294 -9.20919 -8.30550 -6.35652 -0.35119 -0.20143 0.71173 1.10059 1.35027 1.37222 1.48603 1.80666 2.30012 2.34085 3.03357 3.04492 3.42937 3.50628 3.59667 3.86865 4.02720 4.19083 4.30229 4.40112 4.63235 4.66166 4.78020 4.83692 4.97527 5.07025 5.50920 5.89667 5.99020 6.41801 6.50691 6.61480 6.73527 7.29134 8.86494 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.030405 B = 0.003137 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.673711 B = 8924.835231 C = 9353.016206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.246 1.246 7 C -0.531 4.531 8 H 0.033 0.967 9 C 0.174 3.826 10 N -0.691 5.691 11 C 0.056 3.944 12 C 0.082 3.918 13 O -0.305 6.305 14 C 0.329 3.671 15 N -0.523 5.523 16 C 0.164 3.836 17 C -0.120 4.120 18 Cl -0.030 7.030 19 C -0.017 4.017 20 C -0.117 4.117 21 Cl -0.038 7.038 22 H 0.268 0.732 23 H 0.032 0.968 24 H -0.014 1.014 25 H 0.337 0.663 26 H 0.104 0.896 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.204 0.796 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.729 -18.920 -4.953 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.169 1.169 7 C -0.569 4.569 8 H 0.052 0.948 9 C 0.045 3.955 10 N -0.322 5.322 11 C -0.073 4.073 12 C 0.007 3.993 13 O -0.211 6.211 14 C 0.150 3.850 15 N -0.248 5.248 16 C 0.007 3.993 17 C -0.150 4.150 18 Cl -0.001 7.001 19 C -0.043 4.043 20 C -0.147 4.147 21 Cl -0.010 7.010 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.004 0.996 25 H 0.154 0.846 26 H 0.122 0.878 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.221 0.779 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 19.563 -18.258 -3.800 27.028 hybrid contribution -0.378 0.507 -1.612 1.731 sum 19.185 -17.750 -5.412 26.691 Atomic orbital electron populations 1.70059 1.08281 1.28295 1.52265 1.25932 0.95692 1.03486 0.94033 0.85608 0.79474 0.78016 0.79157 1.19255 1.20583 1.16900 1.21346 0.91534 0.93377 1.50637 0.94828 1.19778 0.93671 0.86990 0.95014 1.60459 1.06914 1.14896 1.49881 1.22176 0.88818 0.94245 1.02064 1.22859 1.00568 0.92024 0.83837 1.86325 1.73533 1.19521 1.41730 1.19815 0.90302 0.85697 0.89229 1.67743 1.16179 1.12138 1.28724 1.23074 0.93158 0.87040 0.96057 1.21753 1.06049 0.89441 0.97731 1.98401 1.90542 1.13297 1.97908 1.21520 0.92448 0.90624 0.99693 1.20937 1.06914 0.94459 0.92415 1.98416 1.73841 1.78356 1.50362 0.92316 0.94963 0.99614 0.84586 0.87774 0.94576 0.90933 0.88898 0.77924 0.80089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 2 C 0.01 0.35 5.47 84.65 0.46 0.81 16 3 Si 0.95 44.37 27.47 68.60 1.88 46.25 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 7 C -0.53 -31.59 9.87 25.60 0.25 -31.34 16 8 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 9 C 0.17 8.43 4.51 85.56 0.39 8.82 16 10 N -0.69 -28.96 6.49 -517.91 -3.36 -32.32 16 11 C 0.06 1.75 6.11 86.31 0.53 2.28 16 12 C 0.08 2.19 5.65 71.99 0.41 2.60 16 13 O -0.30 -8.98 9.11 -90.43 -0.82 -9.80 16 14 C 0.33 8.45 7.49 84.81 0.63 9.09 16 15 N -0.52 -11.67 9.21 -308.76 -2.84 -14.51 16 16 C 0.16 2.62 10.98 84.66 0.93 3.55 16 17 C -0.12 -1.81 6.34 22.41 0.14 -1.66 16 18 Cl -0.03 -0.37 28.99 -2.72 -0.08 -0.45 16 19 C -0.02 -0.28 9.78 22.49 0.22 -0.06 16 20 C -0.12 -2.67 6.36 22.51 0.14 -2.52 16 21 Cl -0.04 -0.95 28.54 -2.72 -0.08 -1.03 16 22 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 23 H 0.03 1.53 7.20 -2.38 -0.02 1.52 16 24 H -0.01 -0.65 7.57 -2.39 -0.02 -0.67 16 25 H 0.34 14.66 8.28 -89.70 -0.74 13.91 16 26 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 29 H 0.09 2.03 8.10 -2.39 -0.02 2.01 16 30 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -68.91 305.08 -0.53 -69.44 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.37 Total: 10.90 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 4.10 Total: -8.44 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -5.91 Total: -106.87 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.82 Total: -9.80 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.16 Total: -1.48 kcal Total: -68.91 -0.53 -69.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569804322.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.773 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds