Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99631 * 2 1 4 4 H 1.48496 * 109.47133 * 273.53391 * 3 2 1 5 5 H 1.48494 * 109.47481 * 33.53510 * 3 2 1 6 6 H 1.48504 * 109.47001 * 153.53572 * 3 2 1 7 7 C 1.37877 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99982 * 354.15539 * 7 2 1 9 9 C 1.50702 * 119.99752 * 174.14958 * 7 2 1 10 10 C 1.52995 * 115.54733 * 91.18221 * 9 7 2 11 11 S 1.81399 * 109.47419 * 65.46083 * 10 9 7 12 12 C 1.81399 * 103.00022 * 184.95157 * 11 10 9 13 13 C 1.50697 * 109.47265 * 180.02562 * 12 11 10 14 14 N 1.31128 * 126.55507 * 89.99662 * 13 12 11 15 15 C 1.34490 * 105.61942 * 180.02562 * 14 13 12 16 16 C 1.50698 * 126.29118 * 179.97438 * 15 14 13 17 17 F 1.39900 * 109.47638 * 209.99738 * 16 15 14 18 18 F 1.39907 * 109.47112 * 329.99984 * 16 15 14 19 19 N 1.29941 * 107.42463 * 359.97438 * 15 14 13 20 20 O 1.21308 * 110.24951 * 359.70893 * 19 15 14 21 21 C 1.53001 * 117.49982 * 236.84827 * 9 7 2 22 22 C 1.53002 * 117.49961 * 305.50962 * 9 7 2 23 23 H 0.96997 * 120.00408 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47081 * 185.46166 * 10 9 7 25 25 H 1.09001 * 109.47590 * 305.45792 * 10 9 7 26 26 H 1.09006 * 109.47408 * 299.99620 * 12 11 10 27 27 H 1.08998 * 109.47610 * 60.00056 * 12 11 10 28 28 H 1.09005 * 109.47092 * 89.99396 * 16 15 14 29 29 H 1.09003 * 117.49914 * 215.00454 * 21 9 7 30 30 H 1.09000 * 117.49554 * 0.02894 * 21 9 7 31 31 H 1.08991 * 117.50180 * 359.97438 * 22 9 7 32 32 H 1.09000 * 117.49364 * 144.97428 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4218 2.0896 -1.3974 5 1 1.4859 2.6300 0.7734 6 1 3.5820 1.4199 0.6240 7 6 2.0046 -1.1940 0.0005 8 1 1.4688 -2.1269 0.0962 9 6 3.5057 -1.1974 -0.1325 10 6 4.2848 -1.1563 1.1836 11 16 3.9823 -2.6843 2.1134 12 6 4.8497 -2.3879 3.6787 13 6 4.6904 -3.5879 4.5763 14 7 5.4842 -4.6300 4.6353 15 6 4.9513 -5.4388 5.5684 16 6 5.4957 -6.7735 6.0080 17 9 4.4404 -7.5955 6.4177 18 9 6.1694 -7.3768 4.9405 19 7 3.8808 -4.8579 6.0213 20 8 3.7164 -3.7906 5.4686 21 6 4.1108 -1.9986 -1.2870 22 6 4.1101 -0.4685 -1.3344 23 1 -0.4850 0.8400 -0.0004 24 1 5.3502 -1.0645 0.9724 25 1 3.9564 -0.3008 1.7738 26 1 5.9086 -2.2204 3.4813 27 1 4.4279 -1.5097 4.1674 28 1 6.1868 -6.6283 6.8383 29 1 5.0641 -2.4964 -1.1089 30 1 3.4231 -2.5228 -1.9506 31 1 3.4220 0.0130 -2.0290 32 1 5.0626 0.0406 -1.1872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596377223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = 1.845699 kcal Electronic energy + Delta-G solvation = -19983.349127 eV Core-core repulsion = 16324.849016 eV Total energy + Delta-G solvation = -3658.500111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.064 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.46173 -47.48134 -45.98516 -37.07929 -36.32060 -33.98936 -32.13807 -29.49073 -28.24205 -28.06740 -25.46044 -23.99766 -22.22809 -21.72501 -19.27318 -18.81378 -18.47246 -17.68022 -17.52020 -16.76815 -16.56849 -15.67543 -15.05354 -15.01513 -14.28609 -14.14017 -13.91701 -13.79658 -13.64722 -13.46815 -13.12633 -12.72893 -12.49094 -12.31680 -12.15357 -11.79398 -11.45428 -11.18586 -10.94656 -10.60413 -10.38451 -10.25864 -9.78863 -9.60284 -9.13536 -8.65158 -8.49332 -7.21415 -6.15266 -4.18480 0.57596 1.42563 2.12692 2.42449 2.55392 2.94378 3.21761 3.31524 3.32528 3.33668 3.49460 4.15743 4.32511 4.35109 4.65383 4.84008 4.86701 5.00111 5.09866 5.31336 5.49527 5.50075 5.78672 5.93655 6.03029 6.21831 6.39486 6.64324 6.91579 7.04647 7.64462 7.69005 8.44168 8.90988 9.46650 10.96593 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.003617 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.649216 B = 7739.203095 C = 8057.706142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.080 3.920 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.483 4.483 8 H 0.082 0.918 9 C 0.011 3.989 10 C -0.044 4.044 11 S -0.179 6.179 12 C -0.033 4.033 13 C 0.226 3.774 14 N -0.449 5.449 15 C 0.087 3.913 16 C 0.381 3.619 17 F -0.181 7.181 18 F -0.175 7.175 19 N -0.344 5.344 20 O 0.106 5.894 21 C -0.174 4.174 22 C -0.190 4.190 23 H 0.265 0.735 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.145 0.855 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.616 -5.929 11.140 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.123 4.123 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.186 1.186 7 C -0.520 4.520 8 H 0.100 0.900 9 C 0.008 3.992 10 C -0.193 4.193 11 S 0.047 5.953 12 C -0.182 4.182 13 C 0.005 3.995 14 N -0.183 5.183 15 C -0.188 4.188 16 C 0.325 3.675 17 F -0.162 7.162 18 F -0.156 7.156 19 N -0.046 5.046 20 O 0.040 5.960 21 C -0.212 4.212 22 C -0.230 4.230 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.726 -7.406 11.400 18.622 hybrid contribution 0.931 2.170 0.136 2.365 sum 13.657 -5.236 11.536 18.628 Atomic orbital electron populations 1.69894 1.06352 1.27105 1.49597 1.24973 0.94535 0.98845 0.93958 0.86883 0.80441 0.83708 0.78397 1.20447 1.22011 1.18561 1.20202 0.86169 0.94856 1.50798 0.89996 1.19018 0.95316 1.00856 0.83987 1.23455 1.00810 0.95056 0.99980 1.87624 1.69549 1.27772 1.10351 1.21881 1.06926 0.92444 0.96944 1.27822 0.83596 0.96599 0.91459 1.71861 1.27906 1.01770 1.16797 1.26348 0.93442 1.01577 0.97403 1.19144 0.82868 0.78300 0.87180 1.93084 1.59495 1.73308 1.90357 1.93095 1.79725 1.83864 1.58941 1.74671 1.16815 0.95198 1.17943 1.85379 1.43234 1.28027 1.39381 1.22889 1.01144 0.92824 1.04303 1.23027 1.01128 0.95103 1.03727 0.92492 0.91867 0.89927 0.85790 0.86078 0.83827 0.90542 0.89236 0.89020 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 2 C 0.08 2.16 5.46 -17.82 -0.10 2.07 16 3 Si 0.88 20.24 24.83 -169.99 -4.22 16.02 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -5.50 5.83 56.52 0.33 -5.17 16 7 C -0.48 -12.71 9.09 -34.44 -0.31 -13.03 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.01 0.23 0.79 -155.66 -0.12 0.10 16 10 C -0.04 -0.81 5.45 37.16 0.20 -0.61 16 11 S -0.18 -3.13 21.42 -107.50 -2.30 -5.43 16 12 C -0.03 -0.40 6.57 36.00 0.24 -0.17 16 13 C 0.23 3.05 7.77 -13.06 -0.10 2.95 16 14 N -0.45 -6.33 11.51 -9.87 -0.11 -6.44 16 15 C 0.09 1.14 7.71 -156.38 -1.21 -0.06 16 16 C 0.38 3.78 5.86 36.00 0.21 3.99 16 17 F -0.18 -2.07 17.28 2.25 0.04 -2.03 16 18 F -0.18 -2.04 17.29 2.25 0.04 -2.00 16 19 N -0.34 -4.92 12.10 30.90 0.37 -4.54 16 20 O 0.11 1.51 11.31 18.10 0.20 1.71 16 21 C -0.17 -3.36 9.96 -26.69 -0.27 -3.63 16 22 C -0.19 -3.74 7.55 -26.69 -0.20 -3.94 16 23 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 24 H 0.06 0.98 8.09 -51.92 -0.42 0.56 16 25 H 0.08 1.51 6.87 -51.92 -0.36 1.16 16 26 H 0.12 1.23 8.14 -51.92 -0.42 0.81 16 27 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.09 1.92 7.10 -51.93 -0.37 1.55 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -30.61 303.24 -5.61 -36.22 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.31 Total: -0.33 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.66 Total: -12.32 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 1.03 Total: -36.41 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.20 Total: 1.71 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.22 Total: 16.02 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.30 Total: -5.43 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.61 -5.61 -36.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596377223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.066 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds