Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99631 * 2 1 4 4 H 1.48496 * 109.47133 * 273.53391 * 3 2 1 5 5 H 1.48494 * 109.47481 * 33.53510 * 3 2 1 6 6 H 1.48504 * 109.47001 * 153.53572 * 3 2 1 7 7 C 1.37877 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99982 * 354.15539 * 7 2 1 9 9 C 1.50702 * 119.99752 * 174.14958 * 7 2 1 10 10 C 1.52995 * 115.54733 * 91.18221 * 9 7 2 11 11 S 1.81399 * 109.47419 * 65.46083 * 10 9 7 12 12 C 1.81399 * 103.00022 * 184.95157 * 11 10 9 13 13 C 1.50697 * 109.47265 * 180.02562 * 12 11 10 14 14 N 1.31128 * 126.55507 * 89.99662 * 13 12 11 15 15 C 1.34490 * 105.61942 * 180.02562 * 14 13 12 16 16 C 1.50698 * 126.29118 * 179.97438 * 15 14 13 17 17 F 1.39900 * 109.47638 * 209.99738 * 16 15 14 18 18 F 1.39907 * 109.47112 * 329.99984 * 16 15 14 19 19 N 1.29941 * 107.42463 * 359.97438 * 15 14 13 20 20 O 1.21308 * 110.24951 * 359.70893 * 19 15 14 21 21 C 1.53001 * 117.49982 * 236.84827 * 9 7 2 22 22 C 1.53002 * 117.49961 * 305.50962 * 9 7 2 23 23 H 0.96997 * 120.00408 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47081 * 185.46166 * 10 9 7 25 25 H 1.09001 * 109.47590 * 305.45792 * 10 9 7 26 26 H 1.09006 * 109.47408 * 299.99620 * 12 11 10 27 27 H 1.08998 * 109.47610 * 60.00056 * 12 11 10 28 28 H 1.09005 * 109.47092 * 89.99396 * 16 15 14 29 29 H 1.09003 * 117.49914 * 215.00454 * 21 9 7 30 30 H 1.09000 * 117.49554 * 0.02894 * 21 9 7 31 31 H 1.08991 * 117.50180 * 359.97438 * 22 9 7 32 32 H 1.09000 * 117.49364 * 144.97428 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4218 2.0896 -1.3974 5 1 1.4859 2.6300 0.7734 6 1 3.5820 1.4199 0.6240 7 6 2.0046 -1.1940 0.0005 8 1 1.4688 -2.1269 0.0962 9 6 3.5057 -1.1974 -0.1325 10 6 4.2848 -1.1563 1.1836 11 16 3.9823 -2.6843 2.1134 12 6 4.8497 -2.3879 3.6787 13 6 4.6904 -3.5879 4.5763 14 7 5.4842 -4.6300 4.6353 15 6 4.9513 -5.4388 5.5684 16 6 5.4957 -6.7735 6.0080 17 9 4.4404 -7.5955 6.4177 18 9 6.1694 -7.3768 4.9405 19 7 3.8808 -4.8579 6.0213 20 8 3.7164 -3.7906 5.4686 21 6 4.1108 -1.9986 -1.2870 22 6 4.1101 -0.4685 -1.3344 23 1 -0.4850 0.8400 -0.0004 24 1 5.3502 -1.0645 0.9724 25 1 3.9564 -0.3008 1.7738 26 1 5.9086 -2.2204 3.4813 27 1 4.4279 -1.5097 4.1674 28 1 6.1868 -6.6283 6.8383 29 1 5.0641 -2.4964 -1.1089 30 1 3.4231 -2.5228 -1.9506 31 1 3.4220 0.0130 -2.0290 32 1 5.0626 0.0406 -1.1872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596377223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -18.950045 kcal Electronic energy + Delta-G solvation = -19984.250898 eV Core-core repulsion = 16324.849016 eV Total energy + Delta-G solvation = -3659.401882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.064 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.29363 -48.32536 -47.02569 -38.70007 -37.35390 -35.00703 -34.18452 -30.52198 -29.55756 -29.07651 -27.42830 -25.01774 -23.29924 -23.18579 -20.97826 -19.80740 -19.50225 -18.53460 -18.48763 -18.25261 -17.70170 -17.11590 -16.78711 -16.04130 -15.49772 -15.19101 -15.14698 -15.02080 -14.72737 -14.64907 -14.46765 -14.31895 -13.69540 -13.50236 -13.28168 -12.99436 -12.70207 -12.62588 -12.50659 -12.12490 -11.92384 -11.63639 -11.59629 -10.92683 -10.82131 -10.60807 -10.13408 -8.55430 -8.22611 -6.30539 -0.51224 0.35966 1.04586 1.41394 1.42064 1.43102 1.54811 1.65089 1.74057 2.35295 2.42659 2.80485 3.10577 3.24765 3.30346 3.61795 3.77929 3.93461 4.02900 4.09788 4.31128 4.39820 4.43172 4.47454 4.50174 4.74899 4.89778 5.11500 5.34670 5.50970 5.73816 6.36088 6.65435 6.77909 7.38519 8.93544 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.003617 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.649216 B = 7739.203095 C = 8057.706142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.018 3.982 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.302 1.302 6 H -0.218 1.218 7 C -0.478 4.478 8 H 0.024 0.976 9 C -0.016 4.016 10 C -0.030 4.030 11 S -0.253 6.253 12 C -0.011 4.011 13 C 0.224 3.776 14 N -0.461 5.461 15 C 0.086 3.914 16 C 0.378 3.622 17 F -0.192 7.192 18 F -0.186 7.186 19 N -0.362 5.362 20 O 0.094 5.906 21 C -0.166 4.166 22 C -0.179 4.179 23 H 0.264 0.736 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.200 0.800 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.354 -4.827 12.043 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.179 4.179 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.229 1.229 6 H -0.141 1.141 7 C -0.516 4.516 8 H 0.042 0.958 9 C -0.018 4.018 10 C -0.178 4.178 11 S -0.027 6.027 12 C -0.160 4.160 13 C 0.004 3.996 14 N -0.195 5.195 15 C -0.189 4.189 16 C 0.324 3.676 17 F -0.173 7.173 18 F -0.167 7.167 19 N -0.067 5.067 20 O 0.030 5.970 21 C -0.203 4.203 22 C -0.218 4.218 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.175 0.825 27 H 0.164 0.836 28 H 0.217 0.783 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.489 -6.311 12.288 21.510 hybrid contribution -0.287 1.651 -0.140 1.682 sum 16.202 -4.659 12.148 20.779 Atomic orbital electron populations 1.70078 1.08720 1.27997 1.52494 1.25895 0.95156 1.03101 0.93728 0.85866 0.80784 0.78082 0.78772 1.19916 1.22922 1.14051 1.20298 0.89346 0.92514 1.49401 0.95790 1.18937 0.92698 1.03635 0.86561 1.23224 1.02322 0.94575 0.97706 1.87874 1.71658 1.28608 1.14515 1.21952 1.08077 0.92591 0.93344 1.28109 0.83253 0.96879 0.91382 1.71874 1.28485 1.02075 1.17101 1.26990 0.92802 1.02493 0.96602 1.19844 0.83149 0.76523 0.88127 1.93062 1.60365 1.73491 1.90361 1.93071 1.79790 1.83923 1.59906 1.74665 1.17549 0.95530 1.18920 1.85359 1.43582 1.28229 1.39795 1.22884 1.01755 0.93188 1.02489 1.23095 1.02087 0.95171 1.01462 0.92730 0.87862 0.89995 0.82529 0.83567 0.78333 0.87452 0.91299 0.90847 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 2 C 0.02 1.00 5.46 84.65 0.46 1.47 16 3 Si 0.94 40.93 24.83 68.60 1.70 42.63 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.22 -7.93 5.83 99.48 0.58 -7.35 16 7 C -0.48 -25.89 9.09 25.60 0.23 -25.66 16 8 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 9 C -0.02 -0.67 0.79 -52.93 -0.04 -0.71 16 10 C -0.03 -0.99 5.45 71.98 0.39 -0.60 16 11 S -0.25 -8.44 21.42 -56.49 -1.21 -9.65 16 12 C -0.01 -0.24 6.57 71.24 0.47 0.23 16 13 C 0.22 5.65 7.77 88.38 0.69 6.33 16 14 N -0.46 -12.10 11.51 -303.21 -3.49 -15.59 16 15 C 0.09 2.13 7.71 138.46 1.07 3.19 16 16 C 0.38 6.71 5.86 71.24 0.42 7.13 16 17 F -0.19 -4.12 17.28 44.97 0.78 -3.34 16 18 F -0.19 -4.00 17.29 44.97 0.78 -3.23 16 19 N -0.36 -10.03 12.10 -60.32 -0.73 -10.76 16 20 O 0.09 2.58 11.31 74.84 0.85 3.43 16 21 C -0.17 -6.06 9.96 30.62 0.30 -5.76 16 22 C -0.18 -6.41 7.55 30.62 0.23 -6.18 16 23 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.10 2.59 8.09 -2.39 -0.02 2.57 16 25 H 0.08 2.67 6.87 -2.39 -0.02 2.65 16 26 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.15 2.41 8.14 -2.39 -0.02 2.40 16 28 H 0.20 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.07 2.91 7.10 -2.39 -0.02 2.89 16 32 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -71.29 303.24 4.23 -67.06 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.03 Total: 8.31 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.22 Total: -20.55 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.92 Total: -84.65 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.85 Total: 3.43 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.55 Total: -6.57 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.70 Total: 42.63 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.21 Total: -9.65 kcal Total: -71.29 4.23 -67.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596377223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.111 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds