Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37807 * 121.56131 * 2 1 4 4 C 1.35135 * 114.76291 * 180.20623 * 3 2 1 5 5 S 1.76199 * 127.25155 * 179.86259 * 4 3 2 6 6 O 1.42100 * 106.40184 * 336.17276 * 5 4 3 7 7 O 1.42098 * 106.40353 * 203.24665 * 5 4 3 8 8 N 1.65601 * 107.21580 * 89.70910 * 5 4 3 9 9 C 1.46505 * 120.00076 * 270.00279 * 8 5 4 10 10 C 1.46506 * 120.00051 * 89.99958 * 8 5 4 11 11 H 1.08996 * 109.46660 * 0.02562 * 10 8 5 12 12 C 1.52997 * 109.47289 * 239.99945 * 10 8 5 13 13 C 1.50699 * 109.46928 * 120.00016 * 10 8 5 14 14 H 1.08003 * 119.99962 * 0.02562 * 13 10 8 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99500 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00390 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46755 * 90.00226 * 17 15 13 19 19 H 1.48498 * 109.46866 * 210.00212 * 17 15 13 20 20 H 1.48496 * 109.47178 * 330.00276 * 17 15 13 21 21 S 1.72057 * 105.50072 * 359.60349 * 4 3 2 22 22 N 1.30083 * 121.55799 * 179.75022 * 2 1 3 23 23 H 1.08999 * 109.47152 * 270.22780 * 1 2 3 24 24 H 1.08999 * 109.47155 * 30.22719 * 1 2 3 25 25 H 1.08999 * 109.46686 * 150.22722 * 1 2 3 26 26 H 1.08003 * 122.61652 * 0.03135 * 3 2 1 27 27 H 1.08999 * 109.46723 * 270.00194 * 9 8 5 28 28 H 1.08997 * 109.46979 * 29.99898 * 9 8 5 29 29 H 1.09005 * 109.46961 * 150.00249 * 9 8 5 30 30 H 1.09002 * 109.47153 * 179.97438 * 12 10 8 31 31 H 1.09001 * 109.46832 * 60.00146 * 12 10 8 32 32 H 1.09004 * 109.47261 * 300.00128 * 12 10 8 33 33 H 0.97002 * 119.99804 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1742 0.0000 4 6 3.5702 1.0143 -0.0044 5 16 4.7952 2.2807 -0.0092 6 8 4.1761 3.4358 -0.5583 7 8 5.9726 1.6980 -0.5508 8 7 5.1355 2.6393 1.5713 9 6 4.3741 3.6800 2.2667 10 6 6.1980 1.9158 2.2743 11 1 6.6481 1.1867 1.6006 12 6 5.6073 1.1938 3.4870 13 6 7.2507 2.8913 2.7341 14 1 7.1392 3.9448 2.5240 15 6 8.3560 2.4388 3.4228 16 7 8.4920 1.1559 3.6781 17 14 9.6613 3.6479 3.9921 18 1 9.3227 4.1374 5.3526 19 1 10.9826 2.9710 4.0241 20 1 9.7160 4.7962 3.0522 21 16 3.8305 -0.6865 0.0031 22 7 2.1878 -1.1084 0.0048 23 1 -0.3633 0.0041 1.0276 24 1 -0.3633 0.8879 -0.5174 25 1 -0.3633 -0.8920 -0.5103 26 1 1.7579 2.1464 0.0005 27 1 4.8679 4.6425 2.1322 28 1 3.3658 3.7284 1.8556 29 1 4.3223 3.4435 3.3295 30 1 6.3977 0.6552 4.0097 31 1 4.8459 0.4883 3.1544 32 1 5.1573 1.9233 4.1605 33 1 9.2695 0.8376 4.1630 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336603.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = -31.223567 kcal Electronic energy + Delta-G solvation = -19492.125102 eV Core-core repulsion = 16386.031387 eV Total energy + Delta-G solvation = -3106.093715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.18625 -36.82347 -36.30124 -35.42625 -32.65928 -31.73776 -29.82397 -29.18627 -25.72033 -25.22090 -24.01892 -20.85862 -19.98785 -19.01123 -17.98725 -16.99927 -16.78466 -16.19209 -15.34745 -14.89170 -14.59083 -14.38526 -13.65519 -13.29925 -13.16386 -12.92647 -12.82327 -12.67305 -12.12360 -11.89145 -11.77201 -11.52449 -11.44535 -11.32251 -11.19417 -11.03776 -10.83866 -10.56589 -10.53923 -10.35632 -10.17850 -10.00943 -9.33380 -8.67980 -8.50711 -8.11051 -6.11703 -4.18919 0.18646 0.76467 1.34154 1.75024 2.16173 3.26645 3.34023 3.37535 3.49941 4.09807 4.36737 4.52219 4.89415 4.90623 5.06255 5.19831 5.30190 5.41538 5.47678 5.50349 5.86019 6.04965 6.25233 6.43805 6.52190 6.68504 6.71863 6.92388 7.31117 7.54744 7.71429 7.97086 8.19570 8.83061 9.47137 10.94130 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.005510 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.805556 B = 5080.356038 C = 5363.494666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.073 4.073 4 C -0.773 4.773 5 S 2.705 3.295 6 O -0.960 6.960 7 O -0.939 6.939 8 N -0.972 5.972 9 C 0.106 3.894 10 C 0.264 3.736 11 H 0.063 0.937 12 C -0.151 4.151 13 C -0.520 4.520 14 H 0.065 0.935 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 S 0.394 5.606 22 N -0.452 5.452 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.167 0.833 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.009 0.991 32 H 0.036 0.964 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 -0.986 -4.054 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.982 4.982 5 S 2.786 3.214 6 O -0.950 6.950 7 O -0.929 6.929 8 N -0.814 5.814 9 C -0.040 4.040 10 C 0.161 3.839 11 H 0.080 0.920 12 C -0.211 4.211 13 C -0.560 4.560 14 H 0.083 0.917 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 S 0.551 5.449 22 N -0.278 5.278 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.185 0.815 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.028 0.972 32 H 0.055 0.945 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.444 -2.869 -4.707 13.610 hybrid contribution -0.617 1.730 0.751 1.985 sum -13.061 -1.139 -3.956 13.694 Atomic orbital electron populations 1.20571 0.86147 1.04026 1.03746 1.21691 0.99351 0.88119 0.99529 1.20997 0.90394 1.01263 0.98572 1.37713 1.17721 1.23175 1.19576 1.02005 0.72627 0.72932 0.73792 1.93527 1.78392 1.45758 1.77322 1.93614 1.43470 1.78873 1.76911 1.57464 1.45784 1.47243 1.30888 1.21258 0.93253 0.90741 0.98777 1.18895 0.82618 0.91591 0.90755 0.91979 1.22162 0.99944 0.98856 1.00107 1.21276 1.04424 0.94164 1.36144 0.91705 1.24907 0.97861 0.95383 0.95651 1.69855 1.29401 1.12945 1.40537 0.86462 0.80796 0.81035 0.78939 1.20631 1.21084 1.19753 1.84092 1.07406 0.91917 1.61440 1.76369 1.02744 1.27537 1.21117 0.89780 0.89856 0.90235 0.81531 0.92552 0.93002 0.90579 0.88533 0.97152 0.94505 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.27 36.01 0.37 -0.32 16 2 C 0.09 1.15 6.72 -83.49 -0.56 0.59 16 3 C -0.07 -0.99 9.79 -40.84 -0.40 -1.39 16 4 C -0.77 -12.73 6.64 29.63 0.20 -12.53 16 5 S 2.70 52.25 5.81 -107.50 -0.62 51.63 16 6 O -0.96 -18.84 16.97 -57.17 -0.97 -19.81 16 7 O -0.94 -21.09 16.54 -57.17 -0.95 -22.04 16 8 N -0.97 -19.52 3.06 -115.85 -0.35 -19.87 16 9 C 0.11 1.77 9.53 59.85 0.57 2.34 16 10 C 0.26 6.25 2.62 -69.08 -0.18 6.07 16 11 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 12 C -0.15 -3.34 8.95 37.16 0.33 -3.01 16 13 C -0.52 -13.56 8.37 -34.44 -0.29 -13.85 16 14 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.15 11.32 55.43 0.63 -23.52 16 17 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 S 0.39 6.38 23.67 -107.50 -2.54 3.84 16 22 N -0.45 -6.76 12.05 32.03 0.39 -6.38 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.17 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 29 H 0.08 1.23 6.43 -51.93 -0.33 0.89 16 30 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.76 6.66 -51.93 -0.35 0.41 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -30.76 307.02 -8.70 -39.46 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.83 Total: -3.05 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.66 Total: -49.77 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.92 Total: -41.85 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 58.63 SS G_CDS: -3.17 Total: 55.46 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.76 -8.70 -39.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336603.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.238 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds