Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37807 * 121.56131 * 2 1 4 4 C 1.35135 * 114.76291 * 180.20623 * 3 2 1 5 5 S 1.76199 * 127.25155 * 179.86259 * 4 3 2 6 6 O 1.42100 * 106.40184 * 336.17276 * 5 4 3 7 7 O 1.42098 * 106.40353 * 203.24665 * 5 4 3 8 8 N 1.65601 * 107.21580 * 89.70910 * 5 4 3 9 9 C 1.46505 * 120.00076 * 270.00279 * 8 5 4 10 10 C 1.46506 * 120.00051 * 89.99958 * 8 5 4 11 11 H 1.08996 * 109.46660 * 0.02562 * 10 8 5 12 12 C 1.52997 * 109.47289 * 239.99945 * 10 8 5 13 13 C 1.50699 * 109.46928 * 120.00016 * 10 8 5 14 14 H 1.08003 * 119.99962 * 0.02562 * 13 10 8 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99500 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00390 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46755 * 90.00226 * 17 15 13 19 19 H 1.48498 * 109.46866 * 210.00212 * 17 15 13 20 20 H 1.48496 * 109.47178 * 330.00276 * 17 15 13 21 21 S 1.72057 * 105.50072 * 359.60349 * 4 3 2 22 22 N 1.30083 * 121.55799 * 179.75022 * 2 1 3 23 23 H 1.08999 * 109.47152 * 270.22780 * 1 2 3 24 24 H 1.08999 * 109.47155 * 30.22719 * 1 2 3 25 25 H 1.08999 * 109.46686 * 150.22722 * 1 2 3 26 26 H 1.08003 * 122.61652 * 0.03135 * 3 2 1 27 27 H 1.08999 * 109.46723 * 270.00194 * 9 8 5 28 28 H 1.08997 * 109.46979 * 29.99898 * 9 8 5 29 29 H 1.09005 * 109.46961 * 150.00249 * 9 8 5 30 30 H 1.09002 * 109.47153 * 179.97438 * 12 10 8 31 31 H 1.09001 * 109.46832 * 60.00146 * 12 10 8 32 32 H 1.09004 * 109.47261 * 300.00128 * 12 10 8 33 33 H 0.97002 * 119.99804 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1742 0.0000 4 6 3.5702 1.0143 -0.0044 5 16 4.7952 2.2807 -0.0092 6 8 4.1761 3.4358 -0.5583 7 8 5.9726 1.6980 -0.5508 8 7 5.1355 2.6393 1.5713 9 6 4.3741 3.6800 2.2667 10 6 6.1980 1.9158 2.2743 11 1 6.6481 1.1867 1.6006 12 6 5.6073 1.1938 3.4870 13 6 7.2507 2.8913 2.7341 14 1 7.1392 3.9448 2.5240 15 6 8.3560 2.4388 3.4228 16 7 8.4920 1.1559 3.6781 17 14 9.6613 3.6479 3.9921 18 1 9.3227 4.1374 5.3526 19 1 10.9826 2.9710 4.0241 20 1 9.7160 4.7962 3.0522 21 16 3.8305 -0.6865 0.0031 22 7 2.1878 -1.1084 0.0048 23 1 -0.3633 0.0041 1.0276 24 1 -0.3633 0.8879 -0.5174 25 1 -0.3633 -0.8920 -0.5103 26 1 1.7579 2.1464 0.0005 27 1 4.8679 4.6425 2.1322 28 1 3.3658 3.7284 1.8556 29 1 4.3223 3.4435 3.3295 30 1 6.3977 0.6552 4.0097 31 1 4.8459 0.4883 3.1544 32 1 5.1573 1.9233 4.1605 33 1 9.2695 0.8376 4.1630 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336603.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = -53.027599 kcal Electronic energy + Delta-G solvation = -19493.070596 eV Core-core repulsion = 16386.031387 eV Total energy + Delta-G solvation = -3107.039209 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28383 -38.42598 -37.97156 -37.03360 -34.55122 -32.88349 -30.95620 -30.64744 -27.31369 -27.05217 -25.15863 -22.61479 -21.09101 -20.31662 -19.46866 -18.62259 -18.38455 -17.74053 -17.05906 -16.36255 -15.89741 -15.50501 -15.28729 -14.81810 -14.62226 -14.20675 -13.80258 -13.62266 -13.48479 -13.42203 -13.31728 -13.20079 -13.00485 -12.78866 -12.67921 -12.60783 -12.54004 -12.23687 -12.18116 -11.91499 -11.68149 -11.34591 -11.15453 -10.50045 -9.84351 -9.74938 -8.11038 -6.24841 -1.02960 -0.70007 0.12021 0.62200 1.11697 1.44862 1.47340 1.56535 2.00393 2.45210 2.61938 3.18019 3.29636 3.67804 3.85062 4.04776 4.31788 4.33393 4.67352 4.70404 4.76502 4.83775 4.94188 5.00071 5.09421 5.18579 5.21442 5.43256 5.60598 5.67182 5.83956 6.08728 6.27483 6.82408 7.44310 8.93569 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.005510 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.805556 B = 5080.356038 C = 5363.494666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.097 3.903 3 C -0.050 4.050 4 C -0.790 4.790 5 S 2.721 3.279 6 O -0.965 6.965 7 O -0.982 6.982 8 N -0.980 5.980 9 C 0.095 3.905 10 C 0.269 3.731 11 H 0.029 0.971 12 C -0.139 4.139 13 C -0.536 4.536 14 H 0.062 0.938 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.272 1.272 21 S 0.338 5.662 22 N -0.456 5.456 23 H 0.103 0.897 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.203 0.797 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 0.146 -3.776 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.090 4.090 4 C -1.002 5.002 5 S 2.807 3.193 6 O -0.955 6.955 7 O -0.972 6.972 8 N -0.821 5.821 9 C -0.050 4.050 10 C 0.165 3.835 11 H 0.047 0.953 12 C -0.198 4.198 13 C -0.576 4.576 14 H 0.080 0.920 15 C -0.181 4.181 16 N -0.553 5.553 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.197 1.197 21 S 0.496 5.504 22 N -0.281 5.281 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.104 0.896 26 H 0.220 0.780 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.075 -1.705 -4.423 15.803 hybrid contribution 0.000 1.374 0.601 1.500 sum -15.075 -0.331 -3.822 15.555 Atomic orbital electron populations 1.20841 0.82273 1.05876 1.05499 1.22459 1.01548 0.87091 0.97008 1.21552 0.89192 1.03147 0.95082 1.37145 1.18263 1.21979 1.22817 1.01070 0.72286 0.72808 0.73103 1.93511 1.78351 1.46351 1.77256 1.93561 1.46236 1.79645 1.77749 1.57311 1.45833 1.48075 1.30908 1.21534 0.94625 0.89586 0.99208 1.18542 0.83380 0.90908 0.90687 0.95310 1.21962 0.99459 0.99069 0.99353 1.21601 1.05430 0.94499 1.36049 0.91965 1.25640 0.99746 0.96825 0.95936 1.69979 1.29906 1.14314 1.41131 0.85570 0.78331 0.79003 0.78821 1.19488 1.21156 1.19719 1.84287 1.09611 0.92694 1.63801 1.76526 1.01479 1.28352 1.21743 0.87846 0.86839 0.89630 0.78022 0.92860 0.89361 0.90032 0.91163 0.95341 0.93265 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.27 71.24 0.73 -0.25 16 2 C 0.10 2.16 6.72 42.72 0.29 2.45 16 3 C -0.05 -1.18 9.79 21.45 0.21 -0.97 16 4 C -0.79 -25.08 6.64 67.10 0.45 -24.64 16 5 S 2.72 104.44 5.81 -56.49 -0.33 104.11 16 6 O -0.96 -36.38 16.97 -128.00 -2.17 -38.55 16 7 O -0.98 -45.74 16.54 -128.00 -2.12 -47.85 16 8 N -0.98 -38.93 3.06 -520.43 -1.59 -40.53 16 9 C 0.10 3.01 9.53 127.77 1.22 4.23 16 10 C 0.27 12.95 2.62 44.24 0.12 13.07 16 11 H 0.03 1.58 6.91 -2.39 -0.02 1.57 16 12 C -0.14 -6.16 8.95 71.98 0.64 -5.52 16 13 C -0.54 -28.27 8.37 25.60 0.21 -28.06 16 14 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 15 C 0.02 0.99 5.30 84.65 0.45 1.44 16 16 N -0.91 -50.73 11.32 21.45 0.24 -50.48 16 17 Si 0.96 42.46 29.54 68.60 2.03 44.48 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 S 0.34 11.03 23.67 -56.49 -1.34 9.69 16 22 N -0.46 -12.91 12.05 -52.59 -0.63 -13.54 16 23 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.11 0.72 8.12 -2.39 -0.02 0.70 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.20 3.32 8.06 -2.91 -0.02 3.29 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 2.10 7.79 -2.39 -0.02 2.08 16 29 H 0.08 2.47 6.43 -2.38 -0.02 2.45 16 30 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 2.00 6.66 -2.38 -0.02 1.98 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -67.70 307.02 -0.47 -68.17 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.13 Total: 2.76 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 4.31 Total: -38.25 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -1.99 Total: -104.55 kcal Atomic # 8 Polarization: -82.12 SS G_CDS: -4.29 Total: -86.41 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 115.47 SS G_CDS: -1.66 Total: 113.80 kcal Total: -67.70 -0.47 -68.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336603.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.142 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds