Wall clock time and date at job start Tue Mar 31 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29029 * 124.91076 * 2 1 4 4 C 1.31787 * 117.12189 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.74902 * 179.97438 * 4 3 2 6 6 N 1.46495 * 109.47031 * 275.02212 * 5 4 3 7 7 S 1.65608 * 119.99695 * 165.00069 * 6 5 4 8 8 O 1.42102 * 104.27363 * 181.06921 * 7 6 5 9 9 O 1.42097 * 104.27711 * 308.92535 * 7 6 5 10 10 C 1.81401 * 104.44945 * 64.99881 * 7 6 5 11 11 C 1.52998 * 109.46866 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.46802 * 179.97438 * 11 10 7 13 13 H 1.08008 * 120.00279 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99722 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00187 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47064 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46991 * 119.99857 * 16 14 12 19 19 H 1.48502 * 109.47212 * 239.99901 * 16 14 12 20 20 C 1.33639 * 114.49822 * 0.22710 * 4 3 2 21 21 S 1.70974 * 124.92072 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.47119 * 89.99913 * 1 2 3 23 23 H 1.08996 * 109.46542 * 209.99833 * 1 2 3 24 24 H 1.08996 * 109.47182 * 329.99870 * 1 2 3 25 25 H 1.09000 * 109.46835 * 155.01685 * 5 4 3 26 26 H 1.09003 * 109.47042 * 35.02626 * 5 4 3 27 27 H 0.96999 * 120.00130 * 344.99832 * 6 5 4 28 28 H 1.08996 * 109.47000 * 300.00248 * 10 7 6 29 29 H 1.09006 * 109.46904 * 59.99979 * 10 7 6 30 30 H 1.08993 * 109.47317 * 300.00064 * 11 10 7 31 31 H 1.08998 * 109.47275 * 60.00757 * 11 10 7 32 32 H 0.96992 * 119.99792 * 180.02562 * 15 14 12 33 33 H 1.07997 * 126.03256 * 179.77389 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8795 -0.0005 5 6 4.5307 2.0248 -0.0012 6 7 4.7555 2.4742 -1.3772 7 16 5.4815 3.9350 -1.6629 8 8 5.5077 4.0421 -3.0797 9 8 4.7412 4.8548 -0.8723 10 6 7.1620 3.7411 -1.0080 11 6 7.9433 5.0401 -1.2157 12 6 9.3392 4.8792 -0.6710 13 1 9.6393 3.9438 -0.2221 14 6 10.2333 5.9261 -0.7458 15 7 9.8678 7.0653 -1.2921 16 14 11.9638 5.7265 -0.0714 17 1 12.1230 4.3594 0.4864 18 1 12.9479 5.9323 -1.1644 19 1 12.1965 6.7287 0.9994 20 6 3.9354 -0.4005 -0.0058 21 16 2.4858 -1.4019 0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 5.4749 1.6955 0.4325 26 1 4.1275 2.8480 0.5887 27 1 4.4793 1.9162 -2.1210 28 1 7.1129 3.5124 0.0566 29 1 7.6644 2.9277 -1.5316 30 1 7.9923 5.2683 -2.2803 31 1 7.4411 5.8537 -0.6923 32 1 10.4969 7.8016 -1.3450 33 1 4.9545 -0.7578 -0.0106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609158137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:18 Heat of formation + Delta-G solvation = -39.996697 kcal Electronic energy + Delta-G solvation = -18226.307818 eV Core-core repulsion = 15119.833672 eV Total energy + Delta-G solvation = -3106.474147 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20633 -36.57851 -35.48383 -35.22648 -33.89049 -32.27326 -31.16073 -28.73515 -26.62472 -25.60168 -22.94743 -21.67049 -20.02858 -19.00192 -18.20562 -17.34619 -16.55845 -16.17126 -15.55195 -15.28783 -15.13330 -14.60291 -14.48844 -14.05602 -13.58713 -13.46471 -13.26148 -12.85804 -12.52220 -12.49281 -11.96130 -11.74736 -11.56270 -11.47607 -11.33588 -11.09480 -10.95447 -10.40479 -10.38483 -9.89784 -9.81624 -9.69951 -9.51166 -9.11345 -8.99732 -8.50625 -6.12478 -4.18032 0.37113 0.79741 1.04991 1.41370 2.41337 3.25227 3.28113 3.32478 3.35732 3.72749 4.27046 4.38208 4.54541 4.70616 4.86450 4.96974 5.03673 5.10352 5.20296 5.22905 5.51499 5.53584 5.63849 5.67804 5.83886 5.92436 6.48518 7.05429 7.30920 7.36978 7.49448 7.80621 8.17464 8.85639 9.46747 10.98629 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.003315 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.371111 B = 8445.217064 C = 9017.444439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.048 3.952 3 N -0.459 5.459 4 C 0.064 3.936 5 C 0.191 3.809 6 N -1.122 6.122 7 S 2.593 3.407 8 O -0.966 6.966 9 O -0.963 6.963 10 C -0.589 4.589 11 C 0.027 3.973 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.243 4.243 21 S 0.115 5.885 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.413 0.587 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.264 0.736 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 -18.933 3.704 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.231 4.231 3 N -0.174 5.174 4 C -0.069 4.069 5 C 0.062 3.938 6 N -0.879 5.879 7 S 2.691 3.309 8 O -0.956 6.956 9 O -0.953 6.953 10 C -0.723 4.723 11 C -0.012 4.012 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.383 4.383 21 S 0.370 5.630 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.245 0.755 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.423 -18.459 3.407 24.941 hybrid contribution 1.989 -0.077 0.315 2.015 sum -14.434 -18.537 3.722 23.787 Atomic orbital electron populations 1.20464 0.85025 1.04308 1.04050 1.27122 1.01944 0.90773 1.03229 1.66118 1.04465 1.31474 1.15360 1.20197 0.90152 0.93925 1.02610 1.19729 0.95622 0.94453 0.83952 1.55822 1.78225 1.41598 1.12271 1.05592 0.77963 0.72697 0.74672 1.93555 1.87805 1.84785 1.29464 1.93548 1.69231 1.60685 1.71822 1.30456 1.19341 1.10867 1.11616 1.18975 0.95775 0.87614 0.98857 1.21044 0.95727 0.99348 1.39814 0.91983 1.25077 0.99118 0.95159 0.95189 1.69965 1.35743 1.03312 1.43784 0.86413 0.83906 0.78215 0.78733 1.19659 1.20820 1.20797 1.26965 1.03566 0.95689 1.12099 1.83970 0.97857 1.12873 1.68343 0.89461 0.90085 0.89049 0.89799 0.88360 0.75468 0.86246 0.86035 0.94791 0.94729 0.92574 0.80018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.11 16 2 C 0.05 0.46 7.39 -13.45 -0.10 0.36 16 3 N -0.46 -5.78 10.53 -8.05 -0.08 -5.87 16 4 C 0.06 0.75 6.14 -84.22 -0.52 0.23 16 5 C 0.19 2.32 6.57 -5.20 -0.03 2.28 16 6 N -1.12 -15.29 5.88 -11.66 -0.07 -15.36 16 7 S 2.59 46.80 5.46 -107.50 -0.59 46.22 16 8 O -0.97 -20.36 18.08 -57.54 -1.04 -21.40 16 9 O -0.96 -20.43 17.50 -57.54 -1.01 -21.44 16 10 C -0.59 -11.02 6.01 37.16 0.22 -10.80 16 11 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 12 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 13 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 16 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.24 -2.22 11.12 29.12 0.32 -1.89 16 21 S 0.12 0.90 23.18 -107.50 -2.49 -1.59 16 22 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 26 H 0.10 1.30 7.69 -51.93 -0.40 0.90 16 27 H 0.41 5.04 8.61 -34.48 -0.30 4.75 16 28 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 29 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 33 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -36.54 317.50 -9.10 -45.64 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.04 Total: 1.13 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -0.28 Total: -22.47 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.58 Total: -46.98 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -2.05 Total: -42.84 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 47.70 SS G_CDS: -3.08 Total: 44.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.54 -9.10 -45.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609158137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.642 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds