Wall clock time and date at job start Tue Mar 31 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29029 * 124.91076 * 2 1 4 4 C 1.31787 * 117.12189 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.74902 * 179.97438 * 4 3 2 6 6 N 1.46495 * 109.47031 * 275.02212 * 5 4 3 7 7 S 1.65608 * 119.99695 * 165.00069 * 6 5 4 8 8 O 1.42102 * 104.27363 * 181.06921 * 7 6 5 9 9 O 1.42097 * 104.27711 * 308.92535 * 7 6 5 10 10 C 1.81401 * 104.44945 * 64.99881 * 7 6 5 11 11 C 1.52998 * 109.46866 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.46802 * 179.97438 * 11 10 7 13 13 H 1.08008 * 120.00279 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99722 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00187 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47064 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46991 * 119.99857 * 16 14 12 19 19 H 1.48502 * 109.47212 * 239.99901 * 16 14 12 20 20 C 1.33639 * 114.49822 * 0.22710 * 4 3 2 21 21 S 1.70974 * 124.92072 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.47119 * 89.99913 * 1 2 3 23 23 H 1.08996 * 109.46542 * 209.99833 * 1 2 3 24 24 H 1.08996 * 109.47182 * 329.99870 * 1 2 3 25 25 H 1.09000 * 109.46835 * 155.01685 * 5 4 3 26 26 H 1.09003 * 109.47042 * 35.02626 * 5 4 3 27 27 H 0.96999 * 120.00130 * 344.99832 * 6 5 4 28 28 H 1.08996 * 109.47000 * 300.00248 * 10 7 6 29 29 H 1.09006 * 109.46904 * 59.99979 * 10 7 6 30 30 H 1.08993 * 109.47317 * 300.00064 * 11 10 7 31 31 H 1.08998 * 109.47275 * 60.00757 * 11 10 7 32 32 H 0.96992 * 119.99792 * 180.02562 * 15 14 12 33 33 H 1.07997 * 126.03256 * 179.77389 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8795 -0.0005 5 6 4.5307 2.0248 -0.0012 6 7 4.7555 2.4742 -1.3772 7 16 5.4815 3.9350 -1.6629 8 8 5.5077 4.0421 -3.0797 9 8 4.7412 4.8548 -0.8723 10 6 7.1620 3.7411 -1.0080 11 6 7.9433 5.0401 -1.2157 12 6 9.3392 4.8792 -0.6710 13 1 9.6393 3.9438 -0.2221 14 6 10.2333 5.9261 -0.7458 15 7 9.8678 7.0653 -1.2921 16 14 11.9638 5.7265 -0.0714 17 1 12.1230 4.3594 0.4864 18 1 12.9479 5.9323 -1.1644 19 1 12.1965 6.7287 0.9994 20 6 3.9354 -0.4005 -0.0058 21 16 2.4858 -1.4019 0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 5.4749 1.6955 0.4325 26 1 4.1275 2.8480 0.5887 27 1 4.4793 1.9162 -2.1210 28 1 7.1129 3.5124 0.0566 29 1 7.6644 2.9277 -1.5316 30 1 7.9923 5.2683 -2.2803 31 1 7.4411 5.8537 -0.6923 32 1 10.4969 7.8016 -1.3450 33 1 4.9545 -0.7578 -0.0106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609158137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:17 Heat of formation + Delta-G solvation = -69.079470 kcal Electronic energy + Delta-G solvation = -18227.568942 eV Core-core repulsion = 15119.833672 eV Total energy + Delta-G solvation = -3107.735270 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94920 -38.17236 -37.03263 -36.30013 -35.87774 -33.11187 -32.97576 -29.41451 -27.58368 -27.49800 -23.69922 -23.55761 -20.75121 -20.36889 -19.27061 -18.86802 -18.10146 -17.41124 -17.04586 -16.51925 -16.30551 -16.06367 -15.58230 -15.09536 -14.73812 -14.53213 -14.37315 -14.07094 -13.70606 -13.48790 -13.21564 -13.16500 -13.07359 -12.97719 -12.93784 -12.75825 -12.27618 -12.21732 -12.08207 -11.72057 -11.18037 -10.64215 -10.60211 -10.45484 -10.37319 -9.74457 -8.24624 -6.38438 -0.72678 -0.25771 0.41912 0.73180 1.42523 1.43051 1.52410 1.56375 2.08471 2.39440 2.80759 3.09026 3.09485 3.28460 3.80391 4.02494 4.11799 4.16178 4.32792 4.41479 4.51739 4.67110 4.74979 4.80007 4.81137 5.00040 5.21040 5.29727 5.30745 5.70440 6.01128 6.07707 6.76059 6.80428 7.31822 8.88013 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.003315 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.371111 B = 8445.217064 C = 9017.444439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.030 3.970 3 N -0.505 5.505 4 C 0.038 3.962 5 C 0.182 3.818 6 N -1.105 6.105 7 S 2.619 3.381 8 O -1.000 7.000 9 O -0.999 6.999 10 C -0.582 4.582 11 C 0.017 3.983 12 C -0.536 4.536 13 H 0.079 0.921 14 C -0.006 4.006 15 N -0.936 5.936 16 Si 0.975 3.025 17 H -0.253 1.253 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.239 4.239 21 S 0.171 5.829 22 H 0.096 0.904 23 H 0.106 0.894 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.421 0.579 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.267 0.733 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 -22.100 4.737 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.247 4.247 3 N -0.221 5.221 4 C -0.095 4.095 5 C 0.054 3.946 6 N -0.865 5.865 7 S 2.717 3.283 8 O -0.990 6.990 9 O -0.989 6.989 10 C -0.715 4.715 11 C -0.022 4.022 12 C -0.575 4.575 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.177 1.177 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.380 4.380 21 S 0.425 5.575 22 H 0.115 0.885 23 H 0.124 0.876 24 H 0.103 0.897 25 H 0.136 0.864 26 H 0.098 0.902 27 H 0.257 0.743 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -15.922 -21.649 4.439 27.238 hybrid contribution 1.717 0.793 0.005 1.891 sum -14.205 -20.856 4.444 25.622 Atomic orbital electron populations 1.20615 0.83258 1.05217 1.04899 1.27638 1.03333 0.91240 1.02533 1.66110 1.05353 1.33479 1.17186 1.20104 0.89943 0.94465 1.05014 1.19987 0.97673 0.94544 0.82356 1.55310 1.77293 1.40167 1.13761 1.04515 0.77532 0.73047 0.73241 1.93500 1.88198 1.85783 1.31534 1.93502 1.70087 1.62893 1.72413 1.30300 1.18960 1.08092 1.14108 1.18850 0.96351 0.90302 0.96648 1.21570 0.96581 0.99974 1.39375 0.90251 1.26143 1.04037 0.94781 0.95485 1.70116 1.37531 1.04429 1.45485 0.85246 0.77958 0.78994 0.77922 1.17669 1.20558 1.20526 1.27317 1.05451 0.95232 1.10012 1.83767 0.96102 1.10818 1.66770 0.88549 0.87590 0.89749 0.86382 0.90155 0.74326 0.83370 0.83347 0.97576 0.97489 0.92462 0.77568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.46 71.24 0.75 -0.12 16 2 C 0.03 0.54 7.39 88.52 0.65 1.19 16 3 N -0.51 -12.34 10.53 -179.40 -1.89 -14.23 16 4 C 0.04 0.81 6.14 41.52 0.25 1.07 16 5 C 0.18 4.15 6.57 85.63 0.56 4.71 16 6 N -1.10 -28.90 5.88 -190.80 -1.12 -30.02 16 7 S 2.62 94.87 5.46 -56.49 -0.31 94.56 16 8 O -1.00 -42.82 18.08 -127.65 -2.31 -45.13 16 9 O -1.00 -43.48 17.50 -127.65 -2.23 -45.72 16 10 C -0.58 -21.13 6.01 71.98 0.43 -20.70 16 11 C 0.02 0.90 4.98 29.85 0.15 1.05 16 12 C -0.54 -29.28 9.11 25.60 0.23 -29.05 16 13 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 14 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 15 N -0.94 -57.05 13.29 21.45 0.28 -56.77 16 16 Si 0.98 42.96 29.54 68.60 2.03 44.99 16 17 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 C -0.24 -3.68 11.12 66.78 0.74 -2.94 16 21 S 0.17 2.17 23.18 -56.49 -1.31 0.87 16 22 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.11 0.56 8.14 -2.39 -0.02 0.55 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.12 1.82 8.10 -2.39 -0.02 1.80 16 26 H 0.08 2.11 7.69 -2.39 -0.02 2.10 16 27 H 0.42 9.78 8.61 -96.74 -0.83 8.94 16 28 H 0.15 4.49 8.14 -2.39 -0.02 4.48 16 29 H 0.15 4.58 8.14 -2.39 -0.02 4.56 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -81.00 317.50 -2.33 -83.32 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.30 Total: 12.81 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 4.24 Total: -44.68 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -2.73 Total: -101.02 kcal Atomic # 8 Polarization: -86.31 SS G_CDS: -4.54 Total: -90.85 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 97.04 SS G_CDS: -1.62 Total: 95.42 kcal Total: -81.00 -2.33 -83.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609158137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.244 kcal (2) G-P(sol) polarization free energy of solvation -80.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds