Wall clock time and date at job start Tue Mar 31 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91413 * 2 1 4 4 C 1.31786 * 117.11981 * 180.02562 * 3 2 1 5 5 C 1.50704 * 122.74563 * 179.97438 * 4 3 2 6 6 S 1.81390 * 109.47448 * 90.02363 * 5 4 3 7 7 O 1.42102 * 110.54624 * 68.37376 * 6 5 4 8 8 O 1.42098 * 110.54120 * 291.62363 * 6 5 4 9 9 N 1.65601 * 104.44920 * 179.97438 * 6 5 4 10 10 C 1.46499 * 119.99966 * 65.00360 * 9 6 5 11 11 H 1.09000 * 109.47197 * 24.99168 * 10 9 6 12 12 C 1.53005 * 109.46437 * 264.99678 * 10 9 6 13 13 C 1.50701 * 109.47260 * 145.00162 * 10 9 6 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27562 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.33636 * 114.50273 * 0.22929 * 4 3 2 22 22 S 1.70975 * 124.91404 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47138 * 90.00060 * 1 2 3 24 24 H 1.08996 * 109.46894 * 210.00275 * 1 2 3 25 25 H 1.09002 * 109.46981 * 329.99759 * 1 2 3 26 26 H 1.08999 * 109.46937 * 330.01383 * 5 4 3 27 27 H 1.09000 * 109.46677 * 210.02308 * 5 4 3 28 28 H 0.97001 * 119.99627 * 244.99680 * 9 6 5 29 29 H 1.08996 * 109.47069 * 60.00420 * 12 10 9 30 30 H 1.09004 * 109.46658 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.47438 * 299.99560 * 12 10 9 32 32 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 33 33 H 1.07994 * 126.03840 * 179.76870 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 16 4.9251 2.4840 1.7087 7 8 5.6731 1.4549 2.3418 8 8 3.7930 3.0630 2.3432 9 7 5.9977 3.7372 1.5630 10 6 5.5678 5.0036 0.9650 11 1 4.4899 5.1141 1.0839 12 6 5.9199 5.0099 -0.5240 13 6 6.2690 6.1471 1.6518 14 1 6.9650 5.9502 2.4538 15 6 6.0173 7.4449 1.2604 16 7 5.1696 7.6847 0.2840 17 14 6.8806 8.8628 2.1170 18 1 7.7776 8.3304 3.1739 19 1 7.6812 9.6262 1.1261 20 1 5.8692 9.7593 2.7322 21 6 3.9354 -0.4006 -0.0059 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 4.0902 2.8791 -0.5147 27 1 5.4428 1.7222 -0.5157 28 1 6.9107 3.6327 1.8736 29 1 5.4127 4.1828 -1.0207 30 1 5.5996 5.9520 -0.9690 31 1 6.9977 4.8994 -0.6430 32 1 4.9922 8.5978 0.0089 33 1 4.9544 -0.7581 -0.0107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619170029.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:31 Heat of formation + Delta-G solvation = -32.597677 kcal Electronic energy + Delta-G solvation = -18984.777450 eV Core-core repulsion = 15878.624149 eV Total energy + Delta-G solvation = -3106.153301 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.03693 -36.58418 -35.54025 -35.33788 -33.32277 -32.19736 -29.64776 -28.33668 -27.81089 -25.26947 -23.13046 -20.97854 -19.94808 -18.89765 -17.90407 -17.42160 -16.50538 -15.94636 -15.41898 -15.28755 -14.84874 -14.67210 -13.95464 -13.66095 -13.53455 -12.92163 -12.79759 -12.61831 -12.33375 -12.21503 -11.80801 -11.66444 -11.54334 -11.45629 -11.12280 -10.99921 -10.79278 -10.58332 -10.37394 -10.09374 -9.77622 -9.57568 -9.22376 -8.86584 -8.60043 -8.28655 -6.13342 -4.20117 0.41598 0.83072 1.16662 1.51119 2.64261 3.26008 3.33744 3.36564 3.43421 3.81125 4.27606 4.36412 4.59138 4.65842 5.01540 5.12380 5.18134 5.21360 5.25851 5.40661 5.60399 5.72250 5.99426 6.29498 6.68978 6.73309 6.94125 7.53840 7.58651 7.63436 7.86162 7.98806 8.24999 8.82832 9.45895 10.93226 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.032211 B = 0.004177 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.071500 B = 6701.860667 C = 7015.793776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.458 5.458 4 C 0.078 3.922 5 C -0.564 4.564 6 S 2.611 3.389 7 O -0.976 6.976 8 O -0.944 6.944 9 N -1.099 6.099 10 C 0.262 3.738 11 H 0.053 0.947 12 C -0.164 4.164 13 C -0.519 4.519 14 H 0.066 0.934 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.248 4.248 22 S 0.123 5.877 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.155 0.845 27 H 0.144 0.856 28 H 0.409 0.591 29 H 0.012 0.988 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -16.547 -4.208 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.227 4.227 3 N -0.173 5.173 4 C -0.055 4.055 5 C -0.691 4.691 6 S 2.700 3.300 7 O -0.966 6.966 8 O -0.934 6.934 9 N -0.860 5.860 10 C 0.157 3.843 11 H 0.071 0.929 12 C -0.223 4.223 13 C -0.558 4.558 14 H 0.084 0.916 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.388 4.388 22 S 0.378 5.622 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.173 0.827 27 H 0.163 0.837 28 H 0.243 0.757 29 H 0.030 0.970 30 H 0.115 0.885 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.193 -17.302 -3.588 18.724 hybrid contribution 1.642 1.618 -0.392 2.339 sum -4.551 -15.684 -3.981 16.809 Atomic orbital electron populations 1.20497 0.84726 1.04637 1.04071 1.27136 1.02055 0.90630 1.02851 1.66085 1.03992 1.31685 1.15552 1.19156 0.89719 0.92535 1.04097 1.29635 1.05063 1.04522 1.29911 1.04924 0.74850 0.73762 0.76430 1.93525 1.71100 1.59307 1.72696 1.93600 1.53075 1.76145 1.70576 1.55607 1.25980 1.27015 1.77366 1.18692 0.96604 0.79313 0.89653 0.92903 1.22410 0.99519 1.01811 0.98596 1.21234 1.25956 0.90121 1.18520 0.91625 1.24921 0.95126 0.98848 0.95068 1.69862 1.34391 1.20622 1.27861 0.86374 0.79363 0.81847 0.79428 1.19668 1.20941 1.20836 1.26957 1.03995 0.95593 1.12293 1.83833 0.97336 1.12705 1.68365 0.89362 0.89929 0.88709 0.82700 0.83742 0.75715 0.96957 0.88537 0.94361 0.92603 0.79682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.46 36.01 0.38 -0.29 16 2 C 0.05 0.66 7.39 -13.46 -0.10 0.56 16 3 N -0.46 -7.49 10.53 -8.05 -0.08 -7.58 16 4 C 0.08 1.23 6.00 -84.22 -0.51 0.72 16 5 C -0.56 -8.91 5.64 36.01 0.20 -8.71 16 6 S 2.61 50.55 5.42 -107.50 -0.58 49.97 16 7 O -0.98 -19.55 18.08 -57.54 -1.04 -20.59 16 8 O -0.94 -22.18 17.39 -57.54 -1.00 -23.18 16 9 N -1.10 -22.34 5.35 -5.88 -0.03 -22.37 16 10 C 0.26 6.29 2.79 -69.08 -0.19 6.09 16 11 H 0.05 1.41 7.48 -51.93 -0.39 1.02 16 12 C -0.16 -3.59 9.26 37.16 0.34 -3.24 16 13 C -0.52 -13.76 8.75 -34.44 -0.30 -14.06 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -24.40 11.33 55.43 0.63 -23.77 16 17 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.25 -3.22 11.13 29.12 0.32 -2.89 16 22 S 0.12 1.30 23.18 -107.50 -2.49 -1.19 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.16 2.52 6.78 -51.92 -0.35 2.17 16 27 H 0.14 1.78 8.12 -51.92 -0.42 1.36 16 28 H 0.41 7.58 8.79 -34.47 -0.30 7.28 16 29 H 0.01 0.22 5.78 -51.93 -0.30 -0.08 16 30 H 0.10 2.36 6.08 -51.93 -0.32 2.04 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -33.66 308.65 -8.66 -42.32 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.74 Total: 6.20 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 0.05 Total: -20.23 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.51 Total: -53.72 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -2.04 Total: -43.77 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 51.86 SS G_CDS: -3.07 Total: 48.78 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.66 -8.66 -42.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619170029.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.721 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds