Wall clock time and date at job start Tue Mar 31 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91413 * 2 1 4 4 C 1.31786 * 117.11981 * 180.02562 * 3 2 1 5 5 C 1.50704 * 122.74563 * 179.97438 * 4 3 2 6 6 S 1.81390 * 109.47448 * 90.02363 * 5 4 3 7 7 O 1.42102 * 110.54624 * 68.37376 * 6 5 4 8 8 O 1.42098 * 110.54120 * 291.62363 * 6 5 4 9 9 N 1.65601 * 104.44920 * 179.97438 * 6 5 4 10 10 C 1.46499 * 119.99966 * 65.00360 * 9 6 5 11 11 H 1.09000 * 109.47197 * 24.99168 * 10 9 6 12 12 C 1.53005 * 109.46437 * 264.99678 * 10 9 6 13 13 C 1.50701 * 109.47260 * 145.00162 * 10 9 6 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27562 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.33636 * 114.50273 * 0.22929 * 4 3 2 22 22 S 1.70975 * 124.91404 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47138 * 90.00060 * 1 2 3 24 24 H 1.08996 * 109.46894 * 210.00275 * 1 2 3 25 25 H 1.09002 * 109.46981 * 329.99759 * 1 2 3 26 26 H 1.08999 * 109.46937 * 330.01383 * 5 4 3 27 27 H 1.09000 * 109.46677 * 210.02308 * 5 4 3 28 28 H 0.97001 * 119.99627 * 244.99680 * 9 6 5 29 29 H 1.08996 * 109.47069 * 60.00420 * 12 10 9 30 30 H 1.09004 * 109.46658 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.47438 * 299.99560 * 12 10 9 32 32 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 33 33 H 1.07994 * 126.03840 * 179.76870 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 16 4.9251 2.4840 1.7087 7 8 5.6731 1.4549 2.3418 8 8 3.7930 3.0630 2.3432 9 7 5.9977 3.7372 1.5630 10 6 5.5678 5.0036 0.9650 11 1 4.4899 5.1141 1.0839 12 6 5.9199 5.0099 -0.5240 13 6 6.2690 6.1471 1.6518 14 1 6.9650 5.9502 2.4538 15 6 6.0173 7.4449 1.2604 16 7 5.1696 7.6847 0.2840 17 14 6.8806 8.8628 2.1170 18 1 7.7776 8.3304 3.1739 19 1 7.6812 9.6262 1.1261 20 1 5.8692 9.7593 2.7322 21 6 3.9354 -0.4006 -0.0059 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 4.0902 2.8791 -0.5147 27 1 5.4428 1.7222 -0.5157 28 1 6.9107 3.6327 1.8736 29 1 5.4127 4.1828 -1.0207 30 1 5.5996 5.9520 -0.9690 31 1 6.9977 4.8994 -0.6430 32 1 4.9922 8.5978 0.0089 33 1 4.9544 -0.7581 -0.0107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619170029.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:31 Heat of formation + Delta-G solvation = -59.119071 kcal Electronic energy + Delta-G solvation = -18985.927504 eV Core-core repulsion = 15878.624149 eV Total energy + Delta-G solvation = -3107.303355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05077 -38.21733 -37.31720 -37.01093 -34.30400 -34.13765 -30.65685 -30.08473 -28.85882 -27.23313 -24.10629 -22.81692 -20.98607 -20.40034 -19.31323 -18.80805 -18.18400 -17.39764 -17.17936 -16.58108 -16.26709 -15.87002 -15.39261 -14.92902 -14.64179 -14.42594 -14.03787 -13.89249 -13.62766 -13.55079 -13.22503 -13.13544 -13.05562 -13.02167 -12.84553 -12.60911 -12.39726 -12.22957 -12.12001 -11.97215 -11.11119 -10.74423 -10.62032 -10.51987 -10.14957 -9.71987 -8.15484 -6.29240 -0.87030 -0.33174 0.28001 0.55845 1.43316 1.45893 1.56746 1.58465 1.87593 2.43774 2.66498 2.97987 3.14484 3.24552 3.60032 3.85634 4.21723 4.29397 4.35231 4.50374 4.63071 4.66744 4.87269 4.90966 4.99740 5.12976 5.15584 5.57871 5.76638 6.04775 6.12316 6.41246 6.62736 6.81101 7.40201 8.90273 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.032211 B = 0.004177 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.071500 B = 6701.860667 C = 7015.793776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.034 3.966 3 N -0.509 5.509 4 C 0.039 3.961 5 C -0.539 4.539 6 S 2.615 3.385 7 O -0.985 6.985 8 O -0.997 6.997 9 N -1.100 6.100 10 C 0.265 3.735 11 H 0.018 0.982 12 C -0.155 4.155 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.017 3.983 16 N -0.914 5.914 17 Si 0.963 3.037 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.284 1.284 21 C -0.253 4.253 22 S 0.202 5.798 23 H 0.107 0.893 24 H 0.111 0.889 25 H 0.083 0.917 26 H 0.149 0.851 27 H 0.183 0.817 28 H 0.416 0.584 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 -18.553 -5.042 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.244 4.244 3 N -0.225 5.225 4 C -0.094 4.094 5 C -0.671 4.671 6 S 2.709 3.291 7 O -0.976 6.976 8 O -0.987 6.987 9 N -0.860 5.860 10 C 0.159 3.841 11 H 0.036 0.964 12 C -0.215 4.215 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.184 4.184 16 N -0.552 5.552 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.210 1.210 21 C -0.395 4.395 22 S 0.458 5.542 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.102 0.898 26 H 0.167 0.833 27 H 0.201 0.799 28 H 0.251 0.749 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.806 -19.305 -4.369 20.627 hybrid contribution 1.434 2.035 -0.167 2.495 sum -4.372 -17.270 -4.537 18.383 Atomic orbital electron populations 1.20710 0.82432 1.05503 1.05543 1.27807 1.03776 0.91171 1.01688 1.66078 1.04708 1.34055 1.17701 1.19179 0.89841 0.93221 1.07134 1.29281 1.07245 1.05111 1.25445 1.04594 0.73541 0.73057 0.77861 1.93498 1.71042 1.58849 1.74175 1.93532 1.54591 1.77128 1.73473 1.55368 1.26363 1.26509 1.77775 1.18412 0.94374 0.80168 0.91100 0.96432 1.22238 1.00473 1.01774 0.96974 1.21610 1.26222 0.91468 1.18837 0.91870 1.25683 0.95791 1.01175 0.95704 1.69980 1.35310 1.21148 1.28804 0.85438 0.78325 0.78850 0.78589 1.19236 1.19970 1.20982 1.27431 1.06493 0.95433 1.10100 1.83530 0.94619 1.09930 1.66160 0.87476 0.87059 0.89850 0.83341 0.79911 0.74893 0.93657 0.91168 0.93285 0.92478 0.77259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.46 71.24 0.75 -0.49 16 2 C 0.03 0.79 7.39 88.52 0.65 1.44 16 3 N -0.51 -16.37 10.53 -179.40 -1.89 -18.26 16 4 C 0.04 1.19 6.00 41.52 0.25 1.44 16 5 C -0.54 -16.44 5.64 71.24 0.40 -16.04 16 6 S 2.61 101.99 5.42 -56.49 -0.31 101.69 16 7 O -0.99 -38.99 18.08 -127.65 -2.31 -41.30 16 8 O -1.00 -48.80 17.39 -127.65 -2.22 -51.02 16 9 N -1.10 -45.12 5.35 -172.51 -0.92 -46.05 16 10 C 0.26 12.99 2.79 44.25 0.12 13.11 16 11 H 0.02 0.99 7.48 -2.39 -0.02 0.97 16 12 C -0.16 -6.77 9.26 71.98 0.67 -6.10 16 13 C -0.54 -29.22 8.75 25.60 0.22 -29.00 16 14 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 15 C 0.02 0.90 5.31 84.65 0.45 1.35 16 16 N -0.91 -51.04 11.33 21.45 0.24 -50.79 16 17 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 C -0.25 -5.89 11.13 66.78 0.74 -5.15 16 22 S 0.20 3.65 23.18 -56.49 -1.31 2.34 16 23 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.15 4.78 6.78 -2.39 -0.02 4.76 16 27 H 0.18 3.99 8.12 -2.39 -0.02 3.97 16 28 H 0.42 15.45 8.79 -96.75 -0.85 14.60 16 29 H 0.04 1.62 5.78 -2.39 -0.01 1.60 16 30 H 0.07 3.47 6.08 -2.38 -0.01 3.45 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 33 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -74.58 308.65 -2.14 -76.72 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.29 Total: 21.21 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 4.26 Total: -39.43 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -2.57 Total: -115.10 kcal Atomic # 8 Polarization: -87.79 SS G_CDS: -4.53 Total: -92.32 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 105.64 SS G_CDS: -1.62 Total: 104.02 kcal Total: -74.58 -2.14 -76.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619170029.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.599 kcal (2) G-P(sol) polarization free energy of solvation -74.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds