Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29028 * 124.91305 * 2 1 4 4 C 1.31783 * 117.12550 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.75171 * 179.97438 * 4 3 2 6 6 S 1.81399 * 109.47054 * 90.02210 * 5 4 3 7 7 O 1.42100 * 110.54409 * 291.62542 * 6 5 4 8 8 O 1.42103 * 110.54456 * 68.37321 * 6 5 4 9 9 N 1.65601 * 104.44938 * 179.97438 * 6 5 4 10 10 C 1.46505 * 119.99942 * 65.00328 * 9 6 5 11 11 C 1.52997 * 109.47036 * 164.99997 * 10 9 6 12 12 C 1.50704 * 109.46982 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99878 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99685 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00131 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46944 * 90.00094 * 16 14 12 18 18 H 1.48494 * 109.47279 * 209.99998 * 16 14 12 19 19 H 1.48500 * 109.47122 * 330.00536 * 16 14 12 20 20 C 1.33642 * 114.49833 * 0.22890 * 4 3 2 21 21 S 1.70973 * 124.91869 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.47716 * 89.99820 * 1 2 3 23 23 H 1.08997 * 109.47318 * 209.99874 * 1 2 3 24 24 H 1.09007 * 109.47519 * 329.99810 * 1 2 3 25 25 H 1.09000 * 109.47247 * 330.02239 * 5 4 3 26 26 H 1.09001 * 109.47358 * 210.01665 * 5 4 3 27 27 H 0.97000 * 120.00249 * 244.99577 * 9 6 5 28 28 H 1.09006 * 109.46339 * 284.99628 * 10 9 6 29 29 H 1.08998 * 109.46913 * 44.99310 * 10 9 6 30 30 H 1.08996 * 109.47165 * 299.99629 * 11 10 9 31 31 H 1.09001 * 109.47318 * 59.99336 * 11 10 9 32 32 H 0.97001 * 119.99864 * 179.97438 * 15 14 12 33 33 H 1.07994 * 126.03919 * 179.77343 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2454 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 16 4.9248 2.4841 1.7088 7 8 3.7927 3.0630 2.3433 8 8 5.6728 1.4550 2.3419 9 7 5.9975 3.7374 1.5632 10 6 5.5675 5.0038 0.9652 11 6 6.5957 6.0919 1.2811 12 6 6.1537 7.3945 0.6654 13 1 5.2319 7.4414 0.1046 14 6 6.9262 8.5264 0.8181 15 7 6.5407 9.6630 0.2804 16 14 8.5201 8.4453 1.7887 17 1 9.6398 8.1061 0.8742 18 1 8.7809 9.7624 2.4231 19 1 8.4069 7.4030 2.8404 20 6 3.9354 -0.4005 -0.0059 21 16 2.4856 -1.4019 -0.0006 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 4.0900 2.8794 -0.5146 26 1 5.4428 1.7224 -0.5156 27 1 6.9104 3.6330 1.8739 28 1 5.4839 4.8855 -0.1152 29 1 4.5988 5.2890 1.3756 30 1 6.6793 6.2102 2.3614 31 1 7.5644 5.8066 0.8707 32 1 7.0839 10.4593 0.3882 33 1 4.9544 -0.7579 -0.0106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619178989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = -35.041317 kcal Electronic energy + Delta-G solvation = -18371.156089 eV Core-core repulsion = 15264.896824 eV Total energy + Delta-G solvation = -3106.259265 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23847 -36.98045 -35.84065 -35.53724 -33.53044 -32.70401 -29.86925 -29.68762 -28.04522 -24.57920 -23.35511 -20.94966 -20.15635 -19.29196 -18.10279 -17.57240 -16.80704 -16.47134 -15.96556 -15.43785 -15.07330 -14.40585 -14.24719 -14.17592 -13.98263 -13.65985 -13.09518 -12.98417 -12.64470 -12.49446 -12.16061 -11.97544 -11.84865 -11.84329 -11.60246 -11.34642 -11.12480 -10.49652 -10.06868 -9.97188 -9.89182 -9.75757 -9.34851 -9.18492 -8.86931 -8.60875 -6.11536 -4.11687 0.11909 0.49937 0.98333 1.33205 2.42374 2.91668 3.26383 3.35043 3.37793 3.54665 3.91231 4.22857 4.38839 4.39396 4.75201 4.91990 4.96662 5.11270 5.14459 5.22188 5.33843 5.55186 5.59406 5.77998 6.02391 6.23384 6.49915 7.11144 7.20620 7.29133 7.37946 7.68128 8.42056 8.91520 9.49133 11.01332 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.033970 B = 0.003460 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.062918 B = 8089.963965 C = 8511.027183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.460 5.460 4 C 0.073 3.927 5 C -0.559 4.559 6 S 2.613 3.387 7 O -0.941 6.941 8 O -0.964 6.964 9 N -1.115 6.115 10 C 0.121 3.879 11 C -0.018 4.018 12 C -0.526 4.526 13 H 0.076 0.924 14 C 0.070 3.930 15 N -0.899 5.899 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.264 1.264 20 C -0.246 4.246 21 S 0.133 5.867 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.154 0.846 26 H 0.148 0.852 27 H 0.415 0.585 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.019 0.981 32 H 0.265 0.735 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -23.590 -2.353 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.226 4.226 3 N -0.175 5.175 4 C -0.061 4.061 5 C -0.688 4.688 6 S 2.703 3.297 7 O -0.931 6.931 8 O -0.954 6.954 9 N -0.877 5.877 10 C -0.003 4.003 11 C -0.057 4.057 12 C -0.564 4.564 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.387 4.387 21 S 0.388 5.612 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.172 0.828 26 H 0.166 0.834 27 H 0.250 0.750 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.292 -24.299 -1.652 25.728 hybrid contribution 2.099 0.953 -0.310 2.326 sum -6.192 -23.347 -1.962 24.233 Atomic orbital electron populations 1.20511 0.84593 1.04729 1.04195 1.27146 1.02130 0.90677 1.02626 1.66072 1.03858 1.31818 1.15780 1.19043 0.89745 0.92365 1.04917 1.29385 1.05499 1.04853 1.29037 1.04964 0.74491 0.73665 0.76546 1.93615 1.52604 1.76188 1.70707 1.93567 1.70940 1.58477 1.72415 1.55636 1.26865 1.27184 1.77982 1.21524 1.00531 0.81932 0.96358 1.19754 0.94204 0.93924 0.97780 1.20963 1.09504 0.91592 1.34360 0.90562 1.24994 0.97885 0.95247 0.95128 1.69901 1.38822 1.00208 1.44747 0.86774 0.83904 0.77678 0.80910 1.20238 1.21257 1.18905 1.26990 1.04226 0.95660 1.11844 1.83929 0.97007 1.12429 1.67801 0.89250 0.89833 0.88667 0.82819 0.83395 0.75040 0.92289 0.90489 0.95547 0.96238 0.92549 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.46 36.00 0.38 -0.17 16 2 C 0.05 0.57 7.39 -13.46 -0.10 0.47 16 3 N -0.46 -6.39 10.53 -8.06 -0.08 -6.47 16 4 C 0.07 0.95 6.00 -84.22 -0.51 0.44 16 5 C -0.56 -6.76 6.50 36.01 0.23 -6.53 16 6 S 2.61 40.10 5.44 -107.50 -0.58 39.52 16 7 O -0.94 -18.13 17.50 -57.54 -1.01 -19.14 16 8 O -0.96 -16.06 18.08 -57.54 -1.04 -17.10 16 9 N -1.12 -17.43 5.89 -10.61 -0.06 -17.49 16 10 C 0.12 2.26 6.07 -4.04 -0.02 2.24 16 11 C -0.02 -0.40 4.18 -27.88 -0.12 -0.51 16 12 C -0.53 -14.44 9.66 -34.44 -0.33 -14.77 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 16 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 20 C -0.25 -2.64 11.13 29.12 0.32 -2.31 16 21 S 0.13 1.17 23.18 -107.50 -2.49 -1.32 16 22 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.15 1.79 8.14 -51.92 -0.42 1.37 16 26 H 0.15 1.28 8.12 -51.92 -0.42 0.86 16 27 H 0.42 5.84 8.62 -34.47 -0.30 5.54 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 30 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 31 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -36.02 313.92 -8.69 -44.70 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.01 Total: 1.73 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -0.24 Total: -19.27 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.63 Total: -50.30 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -2.05 Total: -36.24 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 41.27 SS G_CDS: -3.08 Total: 38.20 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.02 -8.69 -44.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619178989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.660 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds