Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29028 * 124.91305 * 2 1 4 4 C 1.31783 * 117.12550 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.75171 * 179.97438 * 4 3 2 6 6 S 1.81399 * 109.47054 * 90.02210 * 5 4 3 7 7 O 1.42100 * 110.54409 * 291.62542 * 6 5 4 8 8 O 1.42103 * 110.54456 * 68.37321 * 6 5 4 9 9 N 1.65601 * 104.44938 * 179.97438 * 6 5 4 10 10 C 1.46505 * 119.99942 * 65.00328 * 9 6 5 11 11 C 1.52997 * 109.47036 * 164.99997 * 10 9 6 12 12 C 1.50704 * 109.46982 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99878 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99685 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00131 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46944 * 90.00094 * 16 14 12 18 18 H 1.48494 * 109.47279 * 209.99998 * 16 14 12 19 19 H 1.48500 * 109.47122 * 330.00536 * 16 14 12 20 20 C 1.33642 * 114.49833 * 0.22890 * 4 3 2 21 21 S 1.70973 * 124.91869 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.47716 * 89.99820 * 1 2 3 23 23 H 1.08997 * 109.47318 * 209.99874 * 1 2 3 24 24 H 1.09007 * 109.47519 * 329.99810 * 1 2 3 25 25 H 1.09000 * 109.47247 * 330.02239 * 5 4 3 26 26 H 1.09001 * 109.47358 * 210.01665 * 5 4 3 27 27 H 0.97000 * 120.00249 * 244.99577 * 9 6 5 28 28 H 1.09006 * 109.46339 * 284.99628 * 10 9 6 29 29 H 1.08998 * 109.46913 * 44.99310 * 10 9 6 30 30 H 1.08996 * 109.47165 * 299.99629 * 11 10 9 31 31 H 1.09001 * 109.47318 * 59.99336 * 11 10 9 32 32 H 0.97001 * 119.99864 * 179.97438 * 15 14 12 33 33 H 1.07994 * 126.03919 * 179.77343 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2454 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 16 4.9248 2.4841 1.7088 7 8 3.7927 3.0630 2.3433 8 8 5.6728 1.4550 2.3419 9 7 5.9975 3.7374 1.5632 10 6 5.5675 5.0038 0.9652 11 6 6.5957 6.0919 1.2811 12 6 6.1537 7.3945 0.6654 13 1 5.2319 7.4414 0.1046 14 6 6.9262 8.5264 0.8181 15 7 6.5407 9.6630 0.2804 16 14 8.5201 8.4453 1.7887 17 1 9.6398 8.1061 0.8742 18 1 8.7809 9.7624 2.4231 19 1 8.4069 7.4030 2.8404 20 6 3.9354 -0.4005 -0.0059 21 16 2.4856 -1.4019 -0.0006 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 4.0900 2.8794 -0.5146 26 1 5.4428 1.7224 -0.5156 27 1 6.9104 3.6330 1.8739 28 1 5.4839 4.8855 -0.1152 29 1 4.5988 5.2890 1.3756 30 1 6.6793 6.2102 2.3614 31 1 7.5644 5.8066 0.8707 32 1 7.0839 10.4593 0.3882 33 1 4.9544 -0.7579 -0.0106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619178989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = -64.203092 kcal Electronic energy + Delta-G solvation = -18372.420639 eV Core-core repulsion = 15264.896824 eV Total energy + Delta-G solvation = -3107.523815 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05618 -38.28317 -37.19759 -37.00985 -34.71433 -34.30058 -31.52598 -30.59997 -28.85617 -26.40404 -24.12685 -22.71686 -21.01427 -20.48333 -19.11848 -18.99051 -18.51141 -17.58660 -17.22455 -16.36250 -16.22234 -15.93060 -15.74078 -15.56635 -14.88184 -14.63630 -14.45394 -13.92410 -13.64128 -13.58326 -13.43687 -13.30550 -13.22774 -13.08602 -13.05257 -12.63807 -12.32058 -12.14491 -11.80879 -11.77505 -11.44725 -10.77235 -10.76282 -10.52908 -10.42472 -9.75426 -8.28112 -6.33451 -0.97178 -0.35563 0.26763 0.56076 1.38445 1.41754 1.52524 1.56627 1.70176 2.37750 2.59973 2.93462 3.07565 3.16145 3.56901 3.82634 4.13401 4.21325 4.28599 4.35564 4.47616 4.63240 4.65703 4.65996 4.86615 4.90043 5.14596 5.36887 5.45351 5.62527 6.07624 6.27347 6.59994 6.74721 7.31157 8.88096 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.033970 B = 0.003460 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.062918 B = 8089.963965 C = 8511.027183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.034 3.966 3 N -0.507 5.507 4 C 0.037 3.963 5 C -0.538 4.538 6 S 2.619 3.381 7 O -0.991 6.991 8 O -0.979 6.979 9 N -1.111 6.111 10 C 0.129 3.871 11 C -0.018 4.018 12 C -0.535 4.535 13 H 0.041 0.959 14 C 0.006 3.994 15 N -0.949 5.949 16 Si 0.950 3.050 17 H -0.261 1.261 18 H -0.288 1.288 19 H -0.247 1.247 20 C -0.253 4.253 21 S 0.197 5.803 22 H 0.106 0.894 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.157 0.843 26 H 0.187 0.813 27 H 0.423 0.577 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.267 0.733 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 -26.349 -2.588 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.244 4.244 3 N -0.223 5.223 4 C -0.096 4.096 5 C -0.670 4.670 6 S 2.714 3.286 7 O -0.981 6.981 8 O -0.969 6.969 9 N -0.872 5.872 10 C 0.004 3.996 11 C -0.057 4.057 12 C -0.573 4.573 13 H 0.059 0.941 14 C -0.191 4.191 15 N -0.589 5.589 16 Si 0.773 3.227 17 H -0.186 1.186 18 H -0.214 1.214 19 H -0.170 1.170 20 C -0.394 4.394 21 S 0.452 5.548 22 H 0.124 0.876 23 H 0.127 0.873 24 H 0.103 0.897 25 H 0.175 0.825 26 H 0.204 0.796 27 H 0.259 0.741 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.178 -27.072 -1.839 28.068 hybrid contribution 1.615 1.669 -0.321 2.344 sum -5.563 -25.403 -2.160 26.095 Atomic orbital electron populations 1.20700 0.82569 1.05506 1.05487 1.27764 1.03704 0.91196 1.01724 1.66085 1.04667 1.33862 1.17666 1.19210 0.89880 0.93280 1.07268 1.29144 1.07403 1.05342 1.25129 1.04599 0.73257 0.72958 0.77799 1.93554 1.54064 1.77067 1.73398 1.93538 1.71056 1.58312 1.73983 1.55379 1.27288 1.26315 1.78245 1.21236 0.98536 0.82141 0.97718 1.19697 0.96067 0.92800 0.97149 1.21335 1.08207 0.94061 1.33733 0.94101 1.25980 1.02023 0.94746 0.96379 1.70058 1.40766 1.01208 1.46862 0.85670 0.79226 0.77993 0.79835 1.18613 1.21430 1.17019 1.27451 1.06383 0.95529 1.10060 1.83674 0.94929 1.10175 1.65997 0.87602 0.87255 0.89692 0.82539 0.79579 0.74064 0.90161 0.92262 0.95806 0.94194 0.92441 0.77224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.46 71.23 0.75 -0.26 16 2 C 0.03 0.68 7.39 88.52 0.65 1.33 16 3 N -0.51 -13.71 10.53 -179.41 -1.89 -15.60 16 4 C 0.04 0.91 6.00 41.52 0.25 1.16 16 5 C -0.54 -12.06 6.50 71.24 0.46 -11.60 16 6 S 2.62 78.40 5.44 -56.49 -0.31 78.09 16 7 O -0.99 -38.95 17.50 -127.65 -2.23 -41.19 16 8 O -0.98 -31.39 18.08 -127.65 -2.31 -33.70 16 9 N -1.11 -33.28 5.89 -187.48 -1.10 -34.38 16 10 C 0.13 4.74 6.07 86.38 0.52 5.27 16 11 C -0.02 -0.80 4.18 29.85 0.12 -0.68 16 12 C -0.53 -29.79 9.66 25.60 0.25 -29.54 16 13 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 14 C 0.01 0.34 5.47 84.66 0.46 0.81 16 15 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 16 Si 0.95 43.00 27.47 68.60 1.88 44.89 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.25 -10.37 6.54 99.48 0.65 -9.72 16 20 C -0.25 -4.76 11.13 66.78 0.74 -4.02 16 21 S 0.20 2.93 23.18 -56.49 -1.31 1.62 16 22 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.16 3.46 8.14 -2.39 -0.02 3.44 16 26 H 0.19 2.60 8.12 -2.39 -0.02 2.58 16 27 H 0.42 11.09 8.62 -96.74 -0.83 10.26 16 28 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 30 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 31 H 0.04 1.61 7.57 -2.39 -0.02 1.59 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.21 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -79.75 313.92 -2.51 -82.26 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.24 Total: 13.84 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 4.21 Total: -37.53 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -2.69 Total: -108.28 kcal Atomic # 8 Polarization: -70.34 SS G_CDS: -4.54 Total: -74.88 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.89 kcal Atomic # 16 Polarization: 81.33 SS G_CDS: -1.62 Total: 79.71 kcal Total: -79.75 -2.51 -82.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619178989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.054 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds