Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86805 * 119.99952 * 2 1 4 4 H 1.48501 * 109.47187 * 240.00263 * 3 2 1 5 5 H 1.48500 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46678 * 120.00648 * 3 2 1 7 7 C 1.38755 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00113 * 179.97438 * 7 2 1 9 9 O 1.34922 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.34309 * 116.99813 * 180.02562 * 9 7 2 11 11 O 1.21213 * 120.00427 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99789 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.47010 * 179.97438 * 12 10 9 14 14 C 1.38290 * 119.97179 * 269.97615 * 13 12 10 15 15 C 1.38246 * 120.11140 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.05594 * 359.67998 * 15 14 13 17 17 C 1.38709 * 119.93896 * 0.61802 * 16 15 14 18 18 O 1.35905 * 120.05570 * 179.67527 * 17 16 15 19 19 C 1.42901 * 116.99604 * 359.72908 * 18 17 16 20 20 F 1.39904 * 109.47113 * 60.00000 * 19 18 17 21 21 F 1.39901 * 109.46966 * 180.02562 * 19 18 17 22 22 F 1.39902 * 109.46987 * 299.99856 * 19 18 17 23 23 C 1.38119 * 119.97324 * 90.00140 * 13 12 10 24 24 H 0.97001 * 120.00435 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46971 * 60.00489 * 12 10 9 26 26 H 1.08994 * 109.47418 * 299.99747 * 12 10 9 27 27 H 1.08001 * 119.94690 * 0.02562 * 14 13 12 28 28 H 1.07997 * 119.97049 * 179.97438 * 15 14 13 29 29 H 1.07997 * 120.02760 * 180.29730 * 16 15 14 30 30 H 1.08006 * 120.02943 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6965 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4965 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3808 -4.8392 0.0000 13 6 2.4188 -5.9319 -0.0007 14 6 2.8933 -6.4331 -1.1990 15 6 3.8450 -7.4358 -1.2031 16 6 4.3294 -7.9350 -0.0092 17 6 3.8505 -7.4382 1.1940 18 8 4.3204 -7.9322 2.3697 19 6 5.3030 -8.9668 2.2920 20 9 6.4271 -8.4920 1.6076 21 9 5.6731 -9.3563 3.5838 22 9 4.7705 -10.0653 1.6088 23 6 2.8949 -6.4321 1.1954 24 1 -0.4851 0.8400 0.0004 25 1 0.7578 -4.9299 -0.8897 26 1 0.7585 -4.9295 0.8902 27 1 2.5198 -6.0407 -2.1333 28 1 4.2137 -7.8259 -2.1402 29 1 5.0764 -8.7150 -0.0130 30 1 2.5234 -6.0409 2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748345433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -250.014251 kcal Electronic energy + Delta-G solvation = -22359.062264 eV Core-core repulsion = 18091.134759 eV Total energy + Delta-G solvation = -4267.927505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.61131 -48.33877 -48.19825 -40.35727 -39.06282 -37.75739 -35.20050 -32.55699 -32.12428 -30.55960 -27.92992 -26.11291 -25.14467 -22.83749 -22.32551 -20.40011 -19.31971 -19.29554 -18.87759 -17.73788 -16.73447 -16.53553 -16.29919 -15.47882 -15.35359 -14.99488 -14.68160 -14.62873 -14.56976 -14.48562 -14.44455 -14.33909 -14.27340 -13.96446 -13.34484 -12.99803 -12.44990 -11.99847 -11.90535 -11.60235 -11.54759 -11.13985 -11.03693 -10.46967 -10.36580 -9.83055 -9.15043 -8.83636 -8.58613 -8.52180 -6.42019 -4.10113 1.18662 1.29856 1.36501 2.67430 3.12448 3.18402 3.22316 3.51176 3.52940 3.62054 3.84340 4.00955 4.57671 4.60660 4.75132 4.98272 5.04304 5.12745 5.27057 5.40419 5.71291 5.82555 5.95792 6.02637 6.27640 6.33797 6.60998 6.73405 6.95293 7.38618 7.94283 8.69970 9.06860 9.83406 10.75853 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.030289 B = 0.003319 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.208948 B = 8433.427875 C = 8772.570512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.383 4.383 8 H 0.095 0.905 9 O -0.214 6.214 10 C 0.398 3.602 11 O -0.549 6.549 12 C -0.070 4.070 13 C -0.018 4.018 14 C -0.118 4.118 15 C -0.080 4.080 16 C -0.195 4.195 17 C 0.099 3.901 18 O -0.310 6.310 19 C 0.604 3.396 20 F -0.165 7.165 21 F -0.135 7.135 22 F -0.167 7.167 23 C -0.107 4.107 24 H 0.270 0.730 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 -18.040 1.229 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.113 0.887 9 O -0.122 6.122 10 C 0.244 3.756 11 O -0.445 6.445 12 C -0.108 4.108 13 C -0.018 4.018 14 C -0.136 4.136 15 C -0.098 4.098 16 C -0.214 4.214 17 C 0.058 3.942 18 O -0.230 6.230 19 C 0.513 3.487 20 F -0.147 7.147 21 F -0.116 7.116 22 F -0.150 7.150 23 C -0.125 4.125 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.095 -17.820 1.415 18.887 hybrid contribution 0.744 0.543 0.025 0.922 sum 6.839 -17.278 1.440 18.638 Atomic orbital electron populations 1.69974 1.05984 1.27807 1.46540 1.25319 0.95802 0.98824 0.96177 0.85752 0.78642 0.79466 0.79366 1.19486 1.20363 1.19486 1.21172 0.92353 0.79809 1.52567 0.88738 1.83869 1.39309 1.13308 1.75665 1.22884 0.86706 0.86884 0.79119 1.90593 1.15541 1.87997 1.50398 1.20125 0.96356 0.88322 1.05993 1.19245 0.95981 0.94431 0.92159 1.21116 0.97651 0.96814 0.98024 1.20858 0.95841 0.95921 0.97184 1.21408 1.03815 1.03951 0.92210 1.18570 0.97015 0.96612 0.82034 1.86414 1.54044 1.50192 1.32335 1.19354 0.77377 0.77534 0.74461 1.93306 1.53505 1.88102 1.79811 1.93295 1.90720 1.90098 1.37481 1.93289 1.86156 1.55555 1.79952 1.20248 0.97080 0.95740 0.99435 0.92014 0.87472 0.87628 0.85104 0.85063 0.85284 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.13 13.67 55.48 0.76 -24.37 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.94 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.38 -11.23 9.65 30.92 0.30 -10.93 16 8 H 0.09 2.80 6.86 -52.49 -0.36 2.44 16 9 O -0.21 -6.00 9.75 -20.70 -0.20 -6.21 16 10 C 0.40 9.47 7.90 36.01 0.28 9.75 16 11 O -0.55 -14.46 15.27 -19.05 -0.29 -14.75 16 12 C -0.07 -1.18 5.94 -29.03 -0.17 -1.35 16 13 C -0.02 -0.28 4.37 -104.64 -0.46 -0.74 16 14 C -0.12 -1.65 9.70 -39.56 -0.38 -2.04 16 15 C -0.08 -0.99 10.04 -39.60 -0.40 -1.39 16 16 C -0.20 -2.54 8.26 -39.43 -0.33 -2.86 16 17 C 0.10 1.43 6.48 -39.22 -0.25 1.18 16 18 O -0.31 -4.19 10.37 -19.44 -0.20 -4.39 16 19 C 0.60 6.86 3.42 101.05 0.35 7.21 16 20 F -0.17 -1.92 15.55 2.25 0.04 -1.88 16 21 F -0.13 -1.44 17.53 2.25 0.04 -1.40 16 22 F -0.17 -1.78 15.58 2.25 0.04 -1.74 16 23 C -0.11 -1.63 9.64 -39.43 -0.38 -2.01 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.11 1.55 8.08 -51.93 -0.42 1.13 16 26 H 0.11 1.56 8.08 -51.93 -0.42 1.14 16 27 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.46 5.10 -52.49 -0.27 1.19 16 30 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 290.09 15.07 4.37 4.37 Total: -1.00 -32.76 290.09 -3.89 -36.64 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -1.87 Total: -0.38 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.54 Total: -2.09 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.76 Total: -24.37 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.69 Total: -25.35 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.11 Total: -5.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.76 -3.89 -36.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748345433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.372 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds