Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86805 * 119.99952 * 2 1 4 4 H 1.48501 * 109.47187 * 240.00263 * 3 2 1 5 5 H 1.48500 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46678 * 120.00648 * 3 2 1 7 7 C 1.38755 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00113 * 179.97438 * 7 2 1 9 9 O 1.34922 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.34309 * 116.99813 * 180.02562 * 9 7 2 11 11 O 1.21213 * 120.00427 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99789 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.47010 * 179.97438 * 12 10 9 14 14 C 1.38290 * 119.97179 * 269.97615 * 13 12 10 15 15 C 1.38246 * 120.11140 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.05594 * 359.67998 * 15 14 13 17 17 C 1.38709 * 119.93896 * 0.61802 * 16 15 14 18 18 O 1.35905 * 120.05570 * 179.67527 * 17 16 15 19 19 C 1.42901 * 116.99604 * 359.72908 * 18 17 16 20 20 F 1.39904 * 109.47113 * 60.00000 * 19 18 17 21 21 F 1.39901 * 109.46966 * 180.02562 * 19 18 17 22 22 F 1.39902 * 109.46987 * 299.99856 * 19 18 17 23 23 C 1.38119 * 119.97324 * 90.00140 * 13 12 10 24 24 H 0.97001 * 120.00435 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46971 * 60.00489 * 12 10 9 26 26 H 1.08994 * 109.47418 * 299.99747 * 12 10 9 27 27 H 1.08001 * 119.94690 * 0.02562 * 14 13 12 28 28 H 1.07997 * 119.97049 * 179.97438 * 15 14 13 29 29 H 1.07997 * 120.02760 * 180.29730 * 16 15 14 30 30 H 1.08006 * 120.02943 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6965 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4965 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3808 -4.8392 0.0000 13 6 2.4188 -5.9319 -0.0007 14 6 2.8933 -6.4331 -1.1990 15 6 3.8450 -7.4358 -1.2031 16 6 4.3294 -7.9350 -0.0092 17 6 3.8505 -7.4382 1.1940 18 8 4.3204 -7.9322 2.3697 19 6 5.3030 -8.9668 2.2920 20 9 6.4271 -8.4920 1.6076 21 9 5.6731 -9.3563 3.5838 22 9 4.7705 -10.0653 1.6088 23 6 2.8949 -6.4321 1.1954 24 1 -0.4851 0.8400 0.0004 25 1 0.7578 -4.9299 -0.8897 26 1 0.7585 -4.9295 0.8902 27 1 2.5198 -6.0407 -2.1333 28 1 4.2137 -7.8259 -2.1402 29 1 5.0764 -8.7150 -0.0130 30 1 2.5234 -6.0409 2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748345433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -269.796269 kcal Electronic energy + Delta-G solvation = -22359.920077 eV Core-core repulsion = 18091.134759 eV Total energy + Delta-G solvation = -4268.785318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.51307 -49.22822 -49.09914 -41.51384 -40.85568 -38.94947 -37.16966 -34.30504 -33.77934 -31.62987 -29.31788 -27.28864 -26.93980 -23.90963 -23.56099 -21.96910 -20.30766 -20.23152 -19.96672 -19.84617 -18.48773 -17.75009 -17.39889 -16.81793 -16.54128 -16.28019 -16.19602 -16.09413 -15.87209 -15.56577 -15.50554 -15.34279 -15.20840 -15.06091 -14.40914 -14.38388 -14.06328 -13.61731 -13.46295 -12.98595 -12.88507 -12.64094 -12.30970 -12.19528 -12.12184 -11.96534 -11.06077 -10.68408 -10.00350 -9.61041 -8.52473 -6.32182 0.07504 0.22693 0.40679 1.33452 1.35295 1.50573 1.67362 1.72546 2.11650 2.44626 2.70351 2.89969 2.98877 3.06287 3.50981 3.61062 3.91673 3.94049 4.21451 4.28128 4.58049 4.60582 4.71425 4.93103 4.97565 5.18538 5.24399 5.31944 5.48894 5.84589 5.88469 6.70001 6.93039 7.78777 8.67822 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.030289 B = 0.003319 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.208948 B = 8433.427875 C = 8772.570512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.002 4.002 3 Si 1.014 2.986 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.421 4.421 8 H 0.080 0.920 9 O -0.245 6.245 10 C 0.399 3.601 11 O -0.577 6.577 12 C -0.058 4.058 13 C -0.039 4.039 14 C -0.126 4.126 15 C -0.074 4.074 16 C -0.194 4.194 17 C 0.089 3.911 18 O -0.321 6.321 19 C 0.609 3.391 20 F -0.165 7.165 21 F -0.130 7.130 22 F -0.160 7.160 23 C -0.124 4.124 24 H 0.279 0.721 25 H 0.134 0.866 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -18.668 0.579 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.203 4.203 3 Si 0.833 3.167 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.098 0.902 9 O -0.153 6.153 10 C 0.246 3.754 11 O -0.475 6.475 12 C -0.095 4.095 13 C -0.039 4.039 14 C -0.144 4.144 15 C -0.092 4.092 16 C -0.213 4.213 17 C 0.047 3.953 18 O -0.242 6.242 19 C 0.518 3.482 20 F -0.147 7.147 21 F -0.111 7.111 22 F -0.142 7.142 23 C -0.143 4.143 24 H 0.088 0.912 25 H 0.152 0.848 26 H 0.144 0.856 27 H 0.163 0.837 28 H 0.184 0.816 29 H 0.165 0.835 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.724 -18.482 0.767 19.681 hybrid contribution 0.599 0.568 0.239 0.859 sum 7.323 -17.914 1.006 19.379 Atomic orbital electron populations 1.70053 1.07543 1.29397 1.46976 1.26465 0.96844 1.02194 0.94761 0.84739 0.77648 0.74631 0.79699 1.18626 1.18362 1.18849 1.21340 0.92081 0.81275 1.54985 0.90231 1.83893 1.40275 1.14146 1.77013 1.24248 0.86698 0.88035 0.76370 1.90556 1.17171 1.88603 1.51138 1.20216 0.96750 0.84331 1.08252 1.19241 0.96754 0.94810 0.93113 1.21403 0.97868 0.97153 0.97964 1.21263 0.94653 0.94824 0.98440 1.21715 1.03692 1.03951 0.91898 1.18675 0.97100 0.96705 0.82797 1.86381 1.54590 1.50871 1.32323 1.19231 0.76978 0.77261 0.74705 1.93305 1.53439 1.88162 1.79834 1.93309 1.90608 1.89962 1.37226 1.93302 1.86059 1.55059 1.79809 1.20351 0.97880 0.96545 0.99488 0.91206 0.84771 0.85611 0.83690 0.81565 0.83518 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.82 13.67 21.62 0.30 -52.52 16 2 C 0.00 -0.13 5.49 84.88 0.47 0.34 16 3 Si 1.01 43.27 29.55 68.60 2.03 45.29 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.42 -25.37 9.65 67.94 0.66 -24.72 16 8 H 0.08 4.88 6.86 -2.91 -0.02 4.86 16 9 O -0.24 -14.09 9.75 14.87 0.14 -13.94 16 10 C 0.40 19.26 7.90 71.24 0.56 19.83 16 11 O -0.58 -31.05 15.27 20.77 0.32 -30.74 16 12 C -0.06 -1.92 5.94 29.10 0.17 -1.75 16 13 C -0.04 -1.19 4.37 -19.88 -0.09 -1.27 16 14 C -0.13 -3.29 9.70 22.28 0.22 -3.08 16 15 C -0.07 -1.64 10.04 22.26 0.22 -1.42 16 16 C -0.19 -4.62 8.26 22.37 0.18 -4.44 16 17 C 0.09 2.47 6.48 22.51 0.15 2.62 16 18 O -0.32 -8.41 10.37 -92.48 -0.96 -9.37 16 19 C 0.61 12.95 3.42 113.37 0.39 13.34 16 20 F -0.17 -3.57 15.55 44.97 0.70 -2.87 16 21 F -0.13 -2.60 17.53 44.97 0.79 -1.81 16 22 F -0.16 -3.09 15.58 44.97 0.70 -2.39 16 23 C -0.12 -3.75 9.64 22.37 0.22 -3.54 16 24 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.13 3.67 8.08 -2.39 -0.02 3.66 16 26 H 0.13 3.62 8.08 -2.39 -0.02 3.60 16 27 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 28 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.15 2.91 5.10 -2.91 -0.01 2.89 16 30 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -71.85 290.09 8.36 -63.48 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.21 Total: 8.96 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 3.14 Total: -4.09 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.30 Total: -52.52 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.50 Total: -54.05 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 2.19 Total: -7.07 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -71.85 8.36 -63.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748345433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.314 kcal (2) G-P(sol) polarization free energy of solvation -71.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds