Wall clock time and date at job start Tue Mar 31 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00202 * 2 1 4 4 H 1.48504 * 109.47231 * 240.00166 * 3 2 1 5 5 H 1.48497 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47309 * 119.99952 * 3 2 1 7 7 C 1.38811 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00076 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99718 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99623 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46953 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99818 * 0.02562 * 11 10 9 13 13 O 1.34270 * 120.00187 * 180.02562 * 11 10 9 14 14 C 1.35876 * 117.00197 * 185.77066 * 13 11 10 15 15 C 1.39928 * 119.57409 * 68.96680 * 14 13 11 16 16 C 1.35929 * 120.90594 * 180.02562 * 15 14 13 17 17 C 1.40657 * 119.78560 * 0.25406 * 16 15 14 18 18 N 1.33715 * 121.03290 * 180.34139 * 17 16 15 19 19 C 1.31357 * 119.73024 * 179.71048 * 18 17 16 20 20 C 1.39626 * 120.72772 * 359.68605 * 19 18 17 21 21 N 1.31364 * 120.70409 * 0.02740 * 20 19 18 22 22 C 1.33790 * 119.70754 * 359.97438 * 21 20 19 23 23 C 1.36557 * 119.58066 * 248.98821 * 14 13 11 24 24 H 0.97003 * 120.00096 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47148 * 60.00291 * 10 9 7 26 26 H 1.08994 * 109.47536 * 299.99745 * 10 9 7 27 27 H 1.08004 * 119.54610 * 0.02562 * 15 14 13 28 28 H 1.07999 * 120.10641 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.63500 * 179.66689 * 19 18 17 30 30 H 1.08000 * 119.64590 * 180.02562 * 20 19 18 31 31 H 1.08005 * 120.15333 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7281 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7955 -5.5016 -0.0021 13 8 2.8408 -6.3393 -0.0008 14 6 2.3032 -7.5811 -0.1231 15 6 1.7193 -7.9645 -1.3355 16 6 1.1731 -9.1999 -1.4876 17 6 1.1877 -10.1074 -0.4130 18 7 0.6636 -11.3313 -0.5372 19 6 0.6962 -12.1603 0.4813 20 6 1.2784 -11.7803 1.6921 21 7 1.8050 -10.5856 1.8375 22 6 1.7843 -9.7230 0.8150 23 6 2.3394 -8.4389 0.9388 24 1 -0.4850 0.8401 0.0004 25 1 3.1243 -3.7314 0.8894 26 1 3.1244 -3.7314 -0.8905 27 1 1.7023 -7.2693 -2.1619 28 1 0.7254 -9.4822 -2.4290 29 1 0.2676 -13.1465 0.3810 30 1 1.2959 -12.4760 2.5180 31 1 2.7930 -8.1314 1.8695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760749868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:45 Heat of formation + Delta-G solvation = -2.698783 kcal Electronic energy + Delta-G solvation = -18919.613375 eV Core-core repulsion = 15679.312635 eV Total energy + Delta-G solvation = -3240.300739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83567 -40.88837 -37.74566 -36.22423 -35.04317 -32.54552 -31.05289 -30.85227 -29.49011 -25.70180 -25.46133 -24.64918 -22.69788 -21.91228 -19.07929 -18.52843 -18.04030 -17.51909 -17.05967 -16.24894 -15.91527 -15.27646 -14.99380 -14.89791 -14.57190 -14.37528 -14.07013 -13.51325 -13.05494 -12.78164 -12.64709 -12.19826 -12.02926 -11.95074 -11.90534 -11.17479 -11.10589 -11.07522 -10.88769 -10.34290 -9.99349 -9.42425 -9.17139 -9.16278 -8.78224 -8.46011 -6.69022 -6.33035 -4.07178 -0.12052 0.18980 1.59772 2.14671 2.37344 2.73099 3.18545 3.18999 3.23844 3.37137 3.72822 3.75841 3.86077 3.96393 4.09160 4.44961 4.56226 4.63420 4.83091 5.00200 5.03054 5.09309 5.29083 5.44895 5.58839 5.63799 5.70045 5.84956 5.94327 5.96463 6.17813 6.60201 6.94590 7.40688 7.49541 7.95514 8.24208 9.12365 10.74368 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.050307 B = 0.002839 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.444608 B = 9859.296472 C = 9947.078250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.923 3.077 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.077 0.923 9 S -0.055 6.055 10 C -0.127 4.127 11 C 0.478 3.522 12 O -0.464 6.464 13 O -0.297 6.297 14 C 0.124 3.876 15 C -0.102 4.102 16 C -0.066 4.066 17 C 0.075 3.925 18 N -0.421 5.421 19 C 0.071 3.929 20 C 0.077 3.923 21 N -0.423 5.423 22 C 0.094 3.906 23 C -0.090 4.090 24 H 0.271 0.729 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.176 0.824 30 H 0.176 0.824 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -21.583 -0.013 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.749 3.251 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.686 4.686 8 H 0.095 0.905 9 S 0.172 5.828 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.346 6.346 13 O -0.214 6.214 14 C 0.080 3.920 15 C -0.122 4.122 16 C -0.085 4.085 17 C -0.049 4.049 18 N -0.135 5.135 19 C -0.104 4.104 20 C -0.099 4.099 21 N -0.137 5.137 22 C -0.030 4.030 23 C -0.110 4.110 24 H 0.081 0.919 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.193 0.807 30 H 0.193 0.807 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.131 -21.513 -0.089 21.740 hybrid contribution 1.815 1.121 0.074 2.135 sum 4.946 -20.392 -0.016 20.983 Atomic orbital electron populations 1.69990 1.06017 1.27888 1.46265 1.25010 0.95077 0.99160 0.94204 0.86158 0.79203 0.80832 0.78956 1.19784 1.20746 1.19790 1.22792 0.95024 0.90988 1.59843 0.90483 1.85482 1.03816 0.96582 1.96941 1.23357 1.07446 0.89676 1.06998 1.23849 0.85226 0.86502 0.72467 1.90727 1.16459 1.84862 1.42569 1.84684 1.40126 1.12636 1.83963 1.18260 0.96131 0.84475 0.93095 1.21269 0.96467 0.97079 0.97377 1.20631 0.98197 0.91536 0.98141 1.19599 0.98095 0.92824 0.94376 1.68667 1.12707 1.01717 1.30434 1.24054 0.96361 1.00213 0.89750 1.24072 0.93743 0.93614 0.98430 1.68679 1.13535 1.02398 1.29078 1.19177 0.98468 0.94668 0.90715 1.20618 0.99931 0.91739 0.98739 0.91915 0.87390 0.87366 0.83758 0.83344 0.80738 0.80684 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.31 13.22 55.49 0.73 -24.57 16 2 C 0.08 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -14.69 9.50 30.94 0.29 -14.39 16 8 H 0.08 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.05 -1.40 20.58 -107.50 -2.21 -3.62 16 10 C -0.13 -2.44 6.27 36.01 0.23 -2.22 16 11 C 0.48 8.75 7.74 36.01 0.28 9.03 16 12 O -0.46 -9.84 15.27 -18.75 -0.29 -10.13 16 13 O -0.30 -4.64 10.01 -23.48 -0.24 -4.87 16 14 C 0.12 1.80 5.22 -39.56 -0.21 1.60 16 15 C -0.10 -1.31 9.21 -39.78 -0.37 -1.68 16 16 C -0.07 -0.78 9.98 -39.50 -0.39 -1.18 16 17 C 0.08 0.97 6.59 -84.76 -0.56 0.41 16 18 N -0.42 -4.83 10.46 -10.78 -0.11 -4.94 16 19 C 0.07 0.58 11.21 -17.24 -0.19 0.38 16 20 C 0.08 0.63 11.21 -17.23 -0.19 0.44 16 21 N -0.42 -5.11 10.47 -10.82 -0.11 -5.22 16 22 C 0.09 1.26 6.59 -84.81 -0.56 0.70 16 23 C -0.09 -1.24 9.89 -39.36 -0.39 -1.63 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.11 1.91 8.14 -51.92 -0.42 1.48 16 26 H 0.11 1.88 8.14 -51.92 -0.42 1.45 16 27 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.18 0.66 8.06 -52.49 -0.42 0.23 16 30 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.15 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -33.52 302.46 -7.35 -40.87 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -2.50 Total: -1.24 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.16 Total: -6.56 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.51 Total: -34.73 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.52 Total: -15.00 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.21 Total: -3.62 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.52 -7.35 -40.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760749868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.170 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds