Wall clock time and date at job start Tue Mar 31 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00202 * 2 1 4 4 H 1.48504 * 109.47231 * 240.00166 * 3 2 1 5 5 H 1.48497 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47309 * 119.99952 * 3 2 1 7 7 C 1.38811 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00076 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99718 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99623 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46953 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99818 * 0.02562 * 11 10 9 13 13 O 1.34270 * 120.00187 * 180.02562 * 11 10 9 14 14 C 1.35876 * 117.00197 * 185.77066 * 13 11 10 15 15 C 1.39928 * 119.57409 * 68.96680 * 14 13 11 16 16 C 1.35929 * 120.90594 * 180.02562 * 15 14 13 17 17 C 1.40657 * 119.78560 * 0.25406 * 16 15 14 18 18 N 1.33715 * 121.03290 * 180.34139 * 17 16 15 19 19 C 1.31357 * 119.73024 * 179.71048 * 18 17 16 20 20 C 1.39626 * 120.72772 * 359.68605 * 19 18 17 21 21 N 1.31364 * 120.70409 * 0.02740 * 20 19 18 22 22 C 1.33790 * 119.70754 * 359.97438 * 21 20 19 23 23 C 1.36557 * 119.58066 * 248.98821 * 14 13 11 24 24 H 0.97003 * 120.00096 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47148 * 60.00291 * 10 9 7 26 26 H 1.08994 * 109.47536 * 299.99745 * 10 9 7 27 27 H 1.08004 * 119.54610 * 0.02562 * 15 14 13 28 28 H 1.07999 * 120.10641 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.63500 * 179.66689 * 19 18 17 30 30 H 1.08000 * 119.64590 * 180.02562 * 20 19 18 31 31 H 1.08005 * 120.15333 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7281 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7955 -5.5016 -0.0021 13 8 2.8408 -6.3393 -0.0008 14 6 2.3032 -7.5811 -0.1231 15 6 1.7193 -7.9645 -1.3355 16 6 1.1731 -9.1999 -1.4876 17 6 1.1877 -10.1074 -0.4130 18 7 0.6636 -11.3313 -0.5372 19 6 0.6962 -12.1603 0.4813 20 6 1.2784 -11.7803 1.6921 21 7 1.8050 -10.5856 1.8375 22 6 1.7843 -9.7230 0.8150 23 6 2.3394 -8.4389 0.9388 24 1 -0.4850 0.8401 0.0004 25 1 3.1243 -3.7314 0.8894 26 1 3.1244 -3.7314 -0.8905 27 1 1.7023 -7.2693 -2.1619 28 1 0.7254 -9.4822 -2.4290 29 1 0.2676 -13.1465 0.3810 30 1 1.2959 -12.4760 2.5180 31 1 2.7930 -8.1314 1.8695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760749868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:45 Heat of formation + Delta-G solvation = -24.436930 kcal Electronic energy + Delta-G solvation = -18920.556011 eV Core-core repulsion = 15679.312635 eV Total energy + Delta-G solvation = -3241.243376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.84913 -42.02267 -38.96404 -37.36872 -35.88379 -34.61802 -32.08658 -31.92537 -30.75706 -27.73266 -26.39532 -25.60972 -23.66057 -23.13363 -20.29150 -19.86504 -19.45723 -18.53739 -18.27743 -17.55310 -17.07737 -16.89685 -16.21238 -16.16290 -15.80382 -15.49538 -15.15419 -14.76476 -14.62372 -14.20056 -13.73835 -13.42349 -13.22116 -12.92836 -12.87513 -12.86996 -12.77642 -12.67339 -12.26617 -11.85270 -11.82302 -11.14942 -10.41303 -10.21717 -10.06087 -9.76280 -8.75599 -8.38121 -6.18313 -1.00127 -0.68186 0.64102 0.90119 0.93577 1.37917 1.45155 1.50726 1.57862 1.92484 2.23080 2.85608 2.94750 2.97378 3.02096 3.13575 3.25475 3.49828 3.69083 3.81125 3.97589 4.06932 4.13694 4.39322 4.40467 4.49388 4.61538 4.75105 4.94353 4.96610 5.21115 5.41003 5.48630 6.15883 6.17506 6.56493 6.62292 7.03830 8.70778 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.050307 B = 0.002839 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.444608 B = 9859.296472 C = 9947.078250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.089 0.911 9 S -0.134 6.134 10 C -0.106 4.106 11 C 0.488 3.512 12 O -0.499 6.499 13 O -0.285 6.285 14 C 0.095 3.905 15 C -0.115 4.115 16 C -0.062 4.062 17 C 0.059 3.941 18 N -0.445 5.445 19 C 0.090 3.910 20 C 0.092 3.908 21 N -0.453 5.453 22 C 0.071 3.929 23 C -0.093 4.093 24 H 0.273 0.727 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.150 0.850 28 H 0.169 0.831 29 H 0.225 0.775 30 H 0.224 0.776 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 -23.581 0.320 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.107 0.893 9 S 0.093 5.907 10 C -0.254 4.254 11 C 0.331 3.669 12 O -0.383 6.383 13 O -0.201 6.201 14 C 0.051 3.949 15 C -0.135 4.135 16 C -0.081 4.081 17 C -0.064 4.064 18 N -0.159 5.159 19 C -0.086 4.086 20 C -0.084 4.084 21 N -0.167 5.167 22 C -0.051 4.051 23 C -0.113 4.113 24 H 0.082 0.918 25 H 0.146 0.854 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.186 0.814 29 H 0.242 0.758 30 H 0.240 0.760 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.238 -23.498 0.226 23.878 hybrid contribution 1.458 1.325 0.065 1.971 sum 5.696 -22.173 0.291 22.895 Atomic orbital electron populations 1.70151 1.07952 1.28893 1.47638 1.26113 0.95957 1.03284 0.93519 0.84989 0.77790 0.75573 0.79586 1.18545 1.20495 1.18663 1.23170 0.95616 0.91396 1.59429 0.89315 1.85595 1.08828 0.99050 1.97217 1.23136 1.04630 0.88574 1.09067 1.23561 0.84799 0.86888 0.71647 1.90714 1.17912 1.85413 1.44294 1.84643 1.39129 1.12844 1.83445 1.18474 0.98336 0.83744 0.94306 1.21334 0.97145 0.97877 0.97111 1.20868 0.97344 0.90976 0.98878 1.19765 0.98488 0.93795 0.94340 1.68751 1.13633 1.01526 1.31986 1.24983 0.93861 1.01217 0.88572 1.24985 0.90890 0.92705 0.99852 1.68714 1.15209 1.03837 1.28967 1.19243 0.99336 0.94920 0.91642 1.20721 0.99772 0.92288 0.98537 0.91836 0.85392 0.85044 0.83202 0.81351 0.75820 0.75968 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.30 13.22 21.65 0.29 -54.01 16 2 C 0.02 0.91 5.49 84.86 0.47 1.37 16 3 Si 1.00 42.30 29.55 68.60 2.03 44.33 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.55 -30.06 9.50 67.96 0.65 -29.42 16 8 H 0.09 4.48 7.80 -2.91 -0.02 4.45 16 9 S -0.13 -7.08 20.58 -56.49 -1.16 -8.24 16 10 C -0.11 -4.06 6.27 71.24 0.45 -3.61 16 11 C 0.49 18.15 7.74 71.24 0.55 18.70 16 12 O -0.50 -21.88 15.27 21.96 0.34 -21.55 16 13 O -0.28 -8.99 10.01 5.02 0.05 -8.94 16 14 C 0.09 2.82 5.22 22.29 0.12 2.94 16 15 C -0.11 -3.03 9.21 22.14 0.20 -2.83 16 16 C -0.06 -1.46 9.98 22.32 0.22 -1.24 16 17 C 0.06 1.47 6.59 40.34 0.27 1.74 16 18 N -0.44 -9.20 10.46 -188.03 -1.97 -11.16 16 19 C 0.09 1.09 11.21 85.10 0.95 2.05 16 20 C 0.09 1.18 11.21 85.10 0.95 2.14 16 21 N -0.45 -10.21 10.47 -188.14 -1.97 -12.18 16 22 C 0.07 1.88 6.59 40.27 0.27 2.14 16 23 C -0.09 -2.63 9.89 22.41 0.22 -2.41 16 24 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.13 4.40 8.14 -2.40 -0.02 4.38 16 26 H 0.13 4.43 8.14 -2.40 -0.02 4.41 16 27 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 28 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.23 0.37 8.06 -2.91 -0.02 0.34 16 30 H 0.22 0.57 8.06 -2.91 -0.02 0.54 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -75.61 302.46 4.09 -71.52 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.17 Total: 8.66 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 5.31 Total: -8.42 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.65 Total: -77.36 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: 0.39 Total: -30.49 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -1.16 Total: -8.24 kcal Total: -75.61 4.09 -71.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760749868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.084 kcal (2) G-P(sol) polarization free energy of solvation -75.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds