Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 119.99659 * 2 1 4 4 H 1.48503 * 109.46974 * 269.99755 * 3 2 1 5 5 H 1.48495 * 109.47601 * 29.99937 * 3 2 1 6 6 H 1.48502 * 109.46770 * 150.00202 * 3 2 1 7 7 C 1.40029 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99897 * 189.83200 * 7 2 1 9 9 C 1.41545 * 120.00255 * 9.83185 * 7 2 1 10 10 C 1.41158 * 120.99796 * 206.21277 * 9 7 2 11 11 C 1.36594 * 119.13247 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26353 * 0.02562 * 11 10 9 13 13 C 1.32504 * 122.22619 * 359.97438 * 12 11 10 14 14 N 1.39349 * 119.64991 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00270 * 354.67759 * 14 13 12 16 16 O 1.21708 * 119.99721 * 354.90805 * 15 14 13 17 17 C 1.46499 * 120.00219 * 174.91413 * 15 14 13 18 18 C 1.36769 * 125.42567 * 179.97438 * 17 15 14 19 19 C 1.37718 * 113.25116 * 180.02562 * 18 17 15 20 20 O 1.36210 * 122.49684 * 179.97438 * 19 18 17 21 21 C 1.34089 * 115.00238 * 0.02562 * 19 18 17 22 22 S 1.70609 * 110.97813 * 359.72429 * 21 19 18 23 23 C 1.38673 * 120.69881 * 0.02562 * 13 12 11 24 24 H 0.96996 * 120.00350 * 0.02562 * 1 2 3 25 25 H 1.08008 * 120.43547 * 0.04729 * 10 9 7 26 26 H 1.08000 * 119.36933 * 180.02562 * 11 10 9 27 27 H 0.97002 * 119.99999 * 174.67218 * 14 13 12 28 28 H 1.07995 * 123.37818 * 0.02562 * 18 17 15 29 29 H 0.96702 * 113.99867 * 90.00558 * 20 19 18 30 30 H 1.07999 * 124.51490 * 180.02562 * 21 19 18 31 31 H 1.08002 * 120.66739 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0757 -1.2196 0.1592 9 6 1.3155 -2.4294 -0.2104 10 6 1.8143 -3.6470 0.3009 11 6 1.1156 -4.7989 0.0752 12 7 -0.0131 -4.7927 -0.6104 13 6 -0.5282 -3.6804 -1.1135 14 7 -1.7227 -3.7360 -1.8291 15 6 -2.2919 -4.9275 -2.0986 16 8 -1.7177 -5.9579 -1.7991 17 6 -3.6019 -4.9824 -2.7523 18 6 -4.2787 -6.1257 -3.0767 19 6 -5.4905 -5.8859 -3.6855 20 8 -6.3187 -6.8897 -4.0879 21 6 -5.7939 -4.5906 -3.8536 22 16 -4.5569 -3.5889 -3.2394 23 6 0.1093 -2.4617 -0.9364 24 1 -0.4850 0.8400 -0.0004 25 1 2.7361 -3.6675 0.8634 26 1 1.4935 -5.7325 0.4650 27 1 -2.1445 -2.9171 -2.1331 28 1 -3.9008 -7.1172 -2.8757 29 1 -6.9530 -7.1702 -3.4140 30 1 -6.7026 -4.2294 -4.3120 31 1 -0.3112 -1.5553 -1.3464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764348811.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = -2.173916 kcal Electronic energy + Delta-G solvation = -19342.454199 eV Core-core repulsion = 16102.176220 eV Total energy + Delta-G solvation = -3240.277979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85559 -39.13951 -37.80867 -35.22245 -34.37762 -33.82918 -30.61981 -29.88778 -28.44952 -26.06997 -25.05403 -22.31364 -21.95903 -20.48681 -19.57772 -18.55284 -17.73031 -17.41073 -16.44711 -15.60588 -15.50114 -15.15639 -14.64501 -14.25081 -14.08574 -13.87154 -13.62140 -13.13273 -12.88717 -12.69462 -12.61572 -12.14544 -11.45768 -11.39180 -11.25294 -10.96285 -10.92230 -10.33809 -10.18286 -9.87512 -9.63911 -9.45131 -8.99592 -8.54781 -8.03514 -7.81809 -7.13131 -6.80318 -4.67605 0.38716 1.30707 1.68956 2.11061 2.64933 2.76460 2.99740 3.03033 3.19557 3.41552 3.65256 3.82435 4.21905 4.65231 4.77606 5.02420 5.20164 5.60246 5.63042 5.86673 6.00676 6.06308 6.48532 6.56527 6.75775 6.90431 7.08143 7.31381 7.35330 7.40205 7.68407 7.87069 8.11845 8.35047 8.62090 8.70301 8.74940 9.61112 10.05295 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.003943 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.990532 B = 7099.810537 C = 8186.362592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.142 3.858 10 C -0.278 4.278 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.336 3.664 14 N -0.651 5.651 15 C 0.573 3.427 16 O -0.465 6.465 17 C -0.239 4.239 18 C -0.088 4.088 19 C 0.081 3.919 20 O -0.483 6.483 21 C -0.278 4.278 22 S 0.235 5.765 23 C -0.238 4.238 24 H 0.282 0.718 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.405 0.595 28 H 0.160 0.840 29 H 0.388 0.612 30 H 0.173 0.827 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 -1.998 -5.536 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.134 3.866 10 C -0.302 4.302 11 C -0.035 4.035 12 N -0.275 5.275 13 C 0.111 3.889 14 N -0.296 5.296 15 C 0.356 3.644 16 O -0.336 6.336 17 C -0.360 4.360 18 C -0.121 4.121 19 C 0.023 3.977 20 O -0.292 6.292 21 C -0.417 4.417 22 S 0.501 5.499 23 C -0.263 4.263 24 H 0.093 0.907 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.241 0.759 28 H 0.177 0.823 29 H 0.243 0.757 30 H 0.190 0.810 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.120 -1.810 -5.899 12.717 hybrid contribution -0.174 0.425 0.292 0.545 sum -11.294 -1.385 -5.606 12.685 Atomic orbital electron populations 1.69733 1.07593 1.29289 1.35442 1.25958 0.94891 1.01499 0.91950 0.86182 0.80371 0.80066 0.79369 1.19202 1.20170 1.18516 1.19605 0.95901 0.89975 1.42915 0.89955 1.17592 0.90312 0.92335 0.86388 1.21711 1.04149 0.94465 1.09885 1.21477 0.90554 0.96677 0.94758 1.67165 1.14972 1.28109 1.17228 1.18134 0.86153 0.91152 0.93445 1.43223 1.23480 1.08218 1.54727 1.16961 0.83218 0.84629 0.79572 1.90917 1.61462 1.32601 1.48658 1.24730 1.01460 0.97739 1.12088 1.20874 0.93896 0.99953 0.97377 1.17004 0.91979 0.86974 1.01725 1.84941 1.49738 1.52255 1.42307 1.25461 1.07044 0.98025 1.11123 1.83145 1.08462 1.06904 1.51391 1.21692 1.00948 0.95422 1.08266 0.90728 0.87863 0.85833 0.75940 0.82273 0.75727 0.80972 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.13 10.70 55.55 0.59 -18.53 16 2 C 0.08 1.78 5.31 -17.34 -0.09 1.69 16 3 Si 0.92 17.63 29.57 -169.99 -5.03 12.61 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.45 -11.43 9.14 -37.65 -0.34 -11.77 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.14 3.69 5.60 -106.55 -0.60 3.09 16 10 C -0.28 -6.74 9.85 -39.07 -0.38 -7.13 16 11 C 0.12 2.84 11.10 -18.04 -0.20 2.63 16 12 N -0.56 -14.17 7.89 -12.77 -0.10 -14.27 16 13 C 0.34 8.16 7.41 -154.76 -1.15 7.02 16 14 N -0.65 -13.10 5.38 -12.72 -0.07 -13.17 16 15 C 0.57 11.31 7.73 -12.93 -0.10 11.21 16 16 O -0.47 -10.93 15.13 5.18 0.08 -10.85 16 17 C -0.24 -3.64 6.45 -36.79 -0.24 -3.87 16 18 C -0.09 -1.22 10.00 -40.30 -0.40 -1.63 16 19 C 0.08 0.95 6.68 -41.23 -0.28 0.68 16 20 O -0.48 -4.94 13.62 -20.41 -0.28 -5.22 16 21 C -0.28 -2.89 10.89 29.27 0.32 -2.57 16 22 S 0.24 2.65 22.16 -107.50 -2.38 0.27 16 23 C -0.24 -5.97 8.62 -38.45 -0.33 -6.30 16 24 H 0.28 6.12 8.29 -40.82 -0.34 5.79 16 25 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 26 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 27 H 0.41 6.85 7.82 -40.82 -0.32 6.53 16 28 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 29 H 0.39 2.03 9.07 45.56 0.41 2.44 16 30 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.13 3.32 6.11 -52.49 -0.32 3.00 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -31.73 295.92 -7.98 -39.71 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -1.46 Total: 11.96 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.79 Total: -6.96 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.43 Total: -45.97 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.20 Total: -16.07 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.38 Total: 0.27 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.73 -7.98 -39.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764348811.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.539 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds