Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 119.99659 * 2 1 4 4 H 1.48503 * 109.46974 * 269.99755 * 3 2 1 5 5 H 1.48495 * 109.47601 * 29.99937 * 3 2 1 6 6 H 1.48502 * 109.46770 * 150.00202 * 3 2 1 7 7 C 1.40029 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99897 * 189.83200 * 7 2 1 9 9 C 1.41545 * 120.00255 * 9.83185 * 7 2 1 10 10 C 1.41158 * 120.99796 * 206.21277 * 9 7 2 11 11 C 1.36594 * 119.13247 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26353 * 0.02562 * 11 10 9 13 13 C 1.32504 * 122.22619 * 359.97438 * 12 11 10 14 14 N 1.39349 * 119.64991 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00270 * 354.67759 * 14 13 12 16 16 O 1.21708 * 119.99721 * 354.90805 * 15 14 13 17 17 C 1.46499 * 120.00219 * 174.91413 * 15 14 13 18 18 C 1.36769 * 125.42567 * 179.97438 * 17 15 14 19 19 C 1.37718 * 113.25116 * 180.02562 * 18 17 15 20 20 O 1.36210 * 122.49684 * 179.97438 * 19 18 17 21 21 C 1.34089 * 115.00238 * 0.02562 * 19 18 17 22 22 S 1.70609 * 110.97813 * 359.72429 * 21 19 18 23 23 C 1.38673 * 120.69881 * 0.02562 * 13 12 11 24 24 H 0.96996 * 120.00350 * 0.02562 * 1 2 3 25 25 H 1.08008 * 120.43547 * 0.04729 * 10 9 7 26 26 H 1.08000 * 119.36933 * 180.02562 * 11 10 9 27 27 H 0.97002 * 119.99999 * 174.67218 * 14 13 12 28 28 H 1.07995 * 123.37818 * 0.02562 * 18 17 15 29 29 H 0.96702 * 113.99867 * 90.00558 * 20 19 18 30 30 H 1.07999 * 124.51490 * 180.02562 * 21 19 18 31 31 H 1.08002 * 120.66739 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0757 -1.2196 0.1592 9 6 1.3155 -2.4294 -0.2104 10 6 1.8143 -3.6470 0.3009 11 6 1.1156 -4.7989 0.0752 12 7 -0.0131 -4.7927 -0.6104 13 6 -0.5282 -3.6804 -1.1135 14 7 -1.7227 -3.7360 -1.8291 15 6 -2.2919 -4.9275 -2.0986 16 8 -1.7177 -5.9579 -1.7991 17 6 -3.6019 -4.9824 -2.7523 18 6 -4.2787 -6.1257 -3.0767 19 6 -5.4905 -5.8859 -3.6855 20 8 -6.3187 -6.8897 -4.0879 21 6 -5.7939 -4.5906 -3.8536 22 16 -4.5569 -3.5889 -3.2394 23 6 0.1093 -2.4617 -0.9364 24 1 -0.4850 0.8400 -0.0004 25 1 2.7361 -3.6675 0.8634 26 1 1.4935 -5.7325 0.4650 27 1 -2.1445 -2.9171 -2.1331 28 1 -3.9008 -7.1172 -2.8757 29 1 -6.9530 -7.1702 -3.4140 30 1 -6.7026 -4.2294 -4.3120 31 1 -0.3112 -1.5553 -1.3464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764348811.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = -24.266890 kcal Electronic energy + Delta-G solvation = -19343.412222 eV Core-core repulsion = 16102.176220 eV Total energy + Delta-G solvation = -3241.236002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39926 -40.25372 -39.44858 -36.31091 -36.00525 -35.59663 -32.48492 -31.28092 -29.90722 -27.94971 -26.26105 -23.91221 -23.60768 -22.03261 -20.79864 -19.82624 -19.44800 -18.30868 -17.93463 -17.12928 -17.01351 -16.49892 -16.10626 -16.06919 -15.68866 -15.38840 -14.64280 -14.53970 -14.40965 -14.31456 -14.09823 -13.35508 -13.15659 -12.88327 -12.70194 -12.34338 -12.12464 -11.88399 -11.78765 -11.61318 -11.28732 -11.20984 -10.03546 -9.94567 -9.68694 -9.45102 -8.94889 -8.60192 -6.59131 -0.67230 0.32422 0.71728 0.77134 0.98606 1.22003 1.43061 1.55435 1.58355 1.92311 2.13751 2.21499 2.82443 3.30174 3.68204 3.72461 3.97864 4.17122 4.26252 4.60747 4.72841 4.77251 4.90575 5.02220 5.06520 5.09748 5.23739 5.45588 5.56840 5.90088 6.07814 6.37480 6.51714 6.75666 6.76977 6.82599 7.09683 7.76518 8.28885 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.003943 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.990532 B = 7099.810537 C = 8186.362592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.114 3.886 10 C -0.291 4.291 11 C 0.113 3.887 12 N -0.581 5.581 13 C 0.331 3.669 14 N -0.646 5.646 15 C 0.573 3.427 16 O -0.514 6.514 17 C -0.285 4.285 18 C -0.081 4.081 19 C 0.071 3.929 20 O -0.489 6.489 21 C -0.253 4.253 22 S 0.287 5.713 23 C -0.255 4.255 24 H 0.293 0.707 25 H 0.119 0.881 26 H 0.151 0.849 27 H 0.418 0.582 28 H 0.149 0.851 29 H 0.410 0.590 30 H 0.207 0.793 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.934 -0.439 -6.365 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.511 4.511 8 H 0.103 0.897 9 C 0.105 3.895 10 C -0.315 4.315 11 C -0.040 4.040 12 N -0.302 5.302 13 C 0.106 3.894 14 N -0.293 5.293 15 C 0.360 3.640 16 O -0.389 6.389 17 C -0.405 4.405 18 C -0.116 4.116 19 C 0.014 3.986 20 O -0.301 6.301 21 C -0.391 4.391 22 S 0.554 5.446 23 C -0.280 4.280 24 H 0.104 0.896 25 H 0.137 0.863 26 H 0.168 0.832 27 H 0.256 0.744 28 H 0.166 0.834 29 H 0.268 0.732 30 H 0.224 0.776 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.760 -0.246 -6.732 14.429 hybrid contribution 0.172 -0.080 0.514 0.548 sum -12.588 -0.326 -6.217 14.043 Atomic orbital electron populations 1.69766 1.08899 1.30930 1.34547 1.26822 0.95712 1.04531 0.90853 0.85062 0.78883 0.75353 0.79593 1.18515 1.19101 1.18353 1.19898 0.96268 0.90852 1.44129 0.89715 1.18022 0.91077 0.93408 0.86959 1.21902 1.04923 0.94254 1.10392 1.21936 0.90155 0.97754 0.94160 1.67287 1.15864 1.28739 1.18260 1.18374 0.87151 0.90726 0.93176 1.43202 1.22450 1.09372 1.54266 1.17510 0.84348 0.83538 0.78584 1.90869 1.63306 1.33874 1.50861 1.24234 1.00653 1.00540 1.15121 1.20999 0.94638 0.99269 0.96663 1.16846 0.91619 0.87946 1.02235 1.84907 1.49963 1.51873 1.43406 1.25892 1.07378 0.97262 1.08604 1.82972 1.07124 1.04515 1.49994 1.21678 1.01474 0.95595 1.09272 0.89626 0.86341 0.83222 0.74411 0.83378 0.73213 0.77555 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.11 10.70 21.84 0.23 -38.88 16 2 C 0.04 1.75 5.31 85.29 0.45 2.20 16 3 Si 0.99 35.27 29.57 68.60 2.03 37.30 16 4 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 5 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 6 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 7 C -0.48 -24.57 9.14 23.52 0.21 -24.35 16 8 H 0.08 4.14 7.87 -2.91 -0.02 4.11 16 9 C 0.11 6.05 5.60 -21.12 -0.12 5.93 16 10 C -0.29 -14.41 9.85 22.60 0.22 -14.19 16 11 C 0.11 5.50 11.10 84.27 0.94 6.43 16 12 N -0.58 -30.58 7.89 -194.32 -1.53 -32.11 16 13 C 0.33 16.62 7.41 132.80 0.98 17.60 16 14 N -0.65 -26.67 5.38 -312.38 -1.68 -28.35 16 15 C 0.57 23.30 7.73 86.40 0.67 23.97 16 16 O -0.51 -25.23 15.13 -4.37 -0.07 -25.30 16 17 C -0.28 -8.59 6.45 24.08 0.16 -8.43 16 18 C -0.08 -2.21 10.00 21.80 0.22 -1.99 16 19 C 0.07 1.49 6.68 21.20 0.14 1.63 16 20 O -0.49 -8.68 13.62 -95.95 -1.31 -9.98 16 21 C -0.25 -4.31 10.89 66.87 0.73 -3.58 16 22 S 0.29 5.80 22.16 -56.49 -1.25 4.55 16 23 C -0.25 -13.16 8.62 23.01 0.20 -12.96 16 24 H 0.29 12.47 8.29 -92.71 -0.77 11.70 16 25 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 26 H 0.15 6.25 8.06 -2.91 -0.02 6.23 16 27 H 0.42 14.31 7.82 -92.71 -0.72 13.58 16 28 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 29 H 0.41 3.12 9.07 -74.06 -0.67 2.45 16 30 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.13 6.68 6.11 -2.91 -0.02 6.66 16 Total: -1.00 -70.19 295.92 1.05 -69.14 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -0.18 Total: 31.38 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.80 Total: -7.75 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -2.98 Total: -99.34 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.37 Total: -35.28 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.25 Total: 4.55 kcal Total: -70.19 1.05 -69.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764348811.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.876 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds