Wall clock time and date at job start Tue Mar 31 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99824 * 2 1 4 4 H 1.48493 * 109.47277 * 270.00069 * 3 2 1 5 5 H 1.48506 * 109.47210 * 30.00258 * 3 2 1 6 6 H 1.48500 * 109.47000 * 149.99887 * 3 2 1 7 7 C 1.38794 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99669 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00663 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00269 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.20823 * 120.00469 * 359.97438 * 11 10 9 13 13 O 1.34292 * 119.99737 * 179.97438 * 11 10 9 14 14 C 1.35833 * 116.99705 * 185.77397 * 13 11 10 15 15 C 1.39902 * 119.59102 * 68.95344 * 14 13 11 16 16 C 1.36035 * 120.89837 * 179.97438 * 15 14 13 17 17 C 1.40351 * 119.69978 * 0.03953 * 16 15 14 18 18 C 1.40552 * 122.01045 * 180.02562 * 17 16 15 19 19 N 1.31818 * 118.38017 * 179.97438 * 18 17 16 20 20 C 1.32502 * 121.65456 * 0.02562 * 19 18 17 21 21 N 1.31140 * 122.81992 * 359.72816 * 20 19 18 22 22 C 1.33953 * 120.24759 * 0.53122 * 21 20 19 23 23 C 1.37739 * 119.58861 * 248.97359 * 14 13 11 24 24 H 0.97002 * 120.00292 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47103 * 59.99713 * 10 9 7 26 26 H 1.09004 * 109.47089 * 299.99996 * 10 9 7 27 27 H 1.07997 * 119.55465 * 0.02562 * 15 14 13 28 28 H 1.08004 * 120.15161 * 179.97438 * 16 15 14 29 29 H 1.07994 * 120.81050 * 359.96594 * 18 17 16 30 30 H 1.08000 * 118.59190 * 179.97438 * 20 19 18 31 31 H 1.08000 * 120.28020 * 0.03069 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7956 -5.5016 -0.0011 13 8 2.8410 -6.3394 -0.0018 14 6 2.3034 -7.5808 -0.1241 15 6 1.7183 -7.9639 -1.3357 16 6 1.1726 -9.2007 -1.4877 17 6 1.1945 -10.1069 -0.4161 18 6 0.6455 -11.3966 -0.5197 19 7 0.7058 -12.1895 0.5316 20 6 1.2656 -11.7978 1.6668 21 7 1.7985 -10.6098 1.8237 22 6 1.7846 -9.7258 0.8174 23 6 2.3409 -8.4466 0.9465 24 1 -0.4851 0.8400 -0.0004 25 1 3.1244 -3.7313 0.8894 26 1 3.1244 -3.7314 -0.8906 27 1 1.7002 -7.2687 -2.1620 28 1 0.7235 -9.4837 -2.4283 29 1 0.1855 -11.7298 -1.4382 30 1 1.2875 -12.4878 2.4974 31 1 2.7941 -8.1415 1.8781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772525589.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:04 Heat of formation + Delta-G solvation = -24.747634 kcal Electronic energy + Delta-G solvation = -18908.238782 eV Core-core repulsion = 15666.981933 eV Total energy + Delta-G solvation = -3241.256849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79905 -41.98250 -39.00686 -37.53514 -35.27715 -34.62081 -32.41974 -31.56935 -31.04067 -27.73990 -26.19952 -25.59620 -23.70746 -23.06506 -20.27179 -19.84846 -19.32944 -18.38747 -18.33222 -17.58737 -17.26321 -16.90080 -16.21955 -16.06470 -15.86890 -15.20466 -15.04870 -14.67241 -14.50283 -14.27937 -14.14659 -13.63721 -13.23974 -13.10597 -12.90338 -12.68282 -12.53309 -12.29875 -11.95167 -11.80994 -11.77399 -11.16707 -10.42204 -10.36705 -10.23327 -9.62854 -8.75771 -8.38699 -6.18685 -1.00286 -0.59945 0.61756 0.88849 0.93803 1.39240 1.43398 1.53304 1.62271 1.96842 2.22449 2.90282 2.96220 2.97001 3.13078 3.24473 3.30370 3.48500 3.55662 3.73912 3.99897 4.09609 4.14154 4.39286 4.46110 4.48965 4.69245 4.84833 4.99301 5.02708 5.27729 5.40990 5.46227 5.88305 6.17352 6.55415 6.98827 7.03604 8.70411 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.050220 B = 0.002828 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.412896 B = 9897.125213 C = 9984.785144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.088 0.912 9 S -0.132 6.132 10 C -0.107 4.107 11 C 0.490 3.510 12 O -0.497 6.497 13 O -0.290 6.290 14 C 0.118 3.882 15 C -0.147 4.147 16 C -0.030 4.030 17 C -0.183 4.183 18 C 0.221 3.779 19 N -0.543 5.543 20 C 0.301 3.699 21 N -0.536 5.536 22 C 0.151 3.849 23 C -0.126 4.126 24 H 0.273 0.727 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.148 0.852 28 H 0.193 0.807 29 H 0.225 0.775 30 H 0.225 0.775 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -21.303 -3.705 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.106 0.894 9 S 0.095 5.905 10 C -0.255 4.255 11 C 0.333 3.667 12 O -0.381 6.381 13 O -0.205 6.205 14 C 0.073 3.927 15 C -0.165 4.165 16 C -0.050 4.050 17 C -0.187 4.187 18 C 0.041 3.959 19 N -0.256 5.256 20 C 0.012 3.988 21 N -0.250 5.250 22 C 0.025 3.975 23 C -0.145 4.145 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.150 0.850 27 H 0.166 0.834 28 H 0.210 0.790 29 H 0.241 0.759 30 H 0.241 0.759 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.707 -22.037 -2.757 22.516 hybrid contribution 1.597 1.970 -0.281 2.551 sum 5.305 -20.067 -3.038 20.977 Atomic orbital electron populations 1.70156 1.07920 1.28831 1.47696 1.26101 0.95960 1.03256 0.93535 0.84940 0.78192 0.75936 0.78864 1.19192 1.20429 1.18217 1.23195 0.95602 0.91415 1.59325 0.89369 1.85574 1.08722 0.98999 1.97208 1.23141 1.04690 0.88635 1.09026 1.23516 0.84755 0.86765 0.71654 1.90711 1.17802 1.85367 1.44245 1.84612 1.39343 1.13081 1.83487 1.18932 0.96202 0.83247 0.94283 1.21410 0.99158 0.99184 0.96769 1.21266 0.94358 0.90358 0.99034 1.19905 1.03910 0.99043 0.95853 1.24478 0.87216 0.86227 0.97950 1.68465 1.18366 1.37486 1.01285 1.25573 0.87178 0.90661 0.95349 1.68776 1.20208 1.04431 1.31618 1.18745 0.95002 0.93372 0.90403 1.20859 1.02133 0.92913 0.98577 0.91832 0.85562 0.84989 0.83434 0.78951 0.75871 0.75911 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.81 13.22 21.65 0.29 -53.53 16 2 C 0.02 0.91 5.49 84.86 0.47 1.38 16 3 Si 1.00 42.02 29.55 68.60 2.03 44.05 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.55 -29.77 9.50 67.95 0.65 -29.13 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.13 -6.89 20.58 -56.49 -1.16 -8.05 16 10 C -0.11 -4.03 6.27 71.24 0.45 -3.58 16 11 C 0.49 17.81 7.74 71.24 0.55 18.37 16 12 O -0.50 -21.20 15.26 21.97 0.34 -20.86 16 13 O -0.29 -8.93 10.01 5.28 0.05 -8.87 16 14 C 0.12 3.34 5.26 22.55 0.12 3.45 16 15 C -0.15 -3.33 9.21 22.16 0.20 -3.12 16 16 C -0.03 -0.49 9.79 22.27 0.22 -0.27 16 17 C -0.18 -3.52 5.74 -21.28 -0.12 -3.64 16 18 C 0.22 3.09 11.15 85.26 0.95 4.04 16 19 N -0.54 -9.63 10.39 -198.77 -2.07 -11.69 16 20 C 0.30 5.75 12.23 180.87 2.21 7.97 16 21 N -0.54 -13.39 10.45 -193.76 -2.03 -15.42 16 22 C 0.15 3.88 6.61 40.19 0.27 4.15 16 23 C -0.13 -3.49 9.97 22.60 0.23 -3.27 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.13 4.32 8.14 -2.40 -0.02 4.30 16 26 H 0.13 4.36 8.14 -2.39 -0.02 4.34 16 27 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 29 H 0.22 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -74.38 302.45 4.80 -69.58 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.17 Total: 8.44 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 6.18 Total: -3.65 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -3.80 Total: -80.64 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: 0.39 Total: -29.74 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: -6.89 SS G_CDS: -1.16 Total: -8.05 kcal Total: -74.38 4.80 -69.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772525589.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.833 kcal (2) G-P(sol) polarization free energy of solvation -74.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds