Wall clock time and date at job start Tue Mar 31 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00104 * 2 1 4 4 H 1.48495 * 109.47249 * 269.99801 * 3 2 1 5 5 H 1.48499 * 109.47122 * 29.99875 * 3 2 1 6 6 H 1.48497 * 109.47594 * 149.99696 * 3 2 1 7 7 C 1.37877 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47159 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47361 * 179.97438 * 10 9 7 12 12 O 1.42103 * 108.57823 * 65.50794 * 11 10 9 13 13 O 1.42101 * 108.58020 * 294.48519 * 11 10 9 14 14 C 1.81402 * 101.92298 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46853 * 179.97438 * 14 11 10 16 16 C 1.38256 * 120.00097 * 269.97615 * 15 14 11 17 17 C 1.38215 * 120.07338 * 180.02562 * 16 15 14 18 18 C 1.38259 * 120.06411 * 359.97438 * 17 16 15 19 19 C 1.38360 * 120.00548 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.04001 * 179.97438 * 19 18 17 21 21 C 1.38365 * 119.99959 * 90.00688 * 15 14 11 22 22 F 1.35108 * 120.03441 * 0.24624 * 21 15 14 23 23 H 0.96994 * 120.00036 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47629 * 59.99564 * 9 7 2 25 25 H 1.09002 * 109.47208 * 299.99396 * 9 7 2 26 26 H 1.08999 * 109.47560 * 59.99120 * 10 9 7 27 27 H 1.08999 * 109.46915 * 299.99383 * 10 9 7 28 28 H 1.08996 * 109.46538 * 60.00282 * 14 11 10 29 29 H 1.08993 * 109.47049 * 300.00248 * 14 11 10 30 30 H 1.08000 * 119.96449 * 0.02753 * 16 15 14 31 31 H 1.07997 * 119.96637 * 179.97438 * 17 16 15 32 32 H 1.08003 * 119.99482 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6279 -5.3463 -1.2242 13 8 0.6289 -5.3457 1.2274 14 6 2.6881 -6.4450 0.0004 15 6 2.1125 -7.8378 0.0015 16 6 1.8502 -8.4764 1.1994 17 6 1.3228 -9.7540 1.2022 18 6 1.0560 -10.3958 0.0070 19 6 1.3174 -9.7595 -1.1935 20 9 1.0574 -10.3862 -2.3617 21 6 1.8472 -8.4777 -1.1962 22 9 2.1085 -7.8565 -2.3672 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8721 -3.6043 0.8904 27 1 2.8718 -3.6044 -0.8895 28 1 3.3022 -6.3054 0.8899 29 1 3.3010 -6.3055 -0.8900 30 1 2.0575 -7.9764 2.1340 31 1 1.1189 -10.2514 2.1389 32 1 0.6435 -11.3940 0.0105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790137355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:49 Heat of formation + Delta-G solvation = -143.485019 kcal Electronic energy + Delta-G solvation = -20522.861081 eV Core-core repulsion = 16825.766207 eV Total energy + Delta-G solvation = -3697.094875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.63555 -48.70956 -39.34560 -36.53724 -35.58529 -33.91148 -33.31691 -31.21470 -30.61213 -27.94694 -25.61105 -23.13905 -22.69192 -21.39944 -18.55195 -18.11588 -17.57016 -17.22902 -17.10366 -16.49403 -15.81030 -15.66469 -15.39092 -15.10489 -15.04964 -14.61679 -14.53122 -13.95615 -13.63946 -13.40051 -12.77753 -12.58236 -12.48835 -12.21140 -11.79797 -11.64350 -11.61770 -11.55418 -11.09181 -10.98614 -10.96357 -10.40931 -10.38241 -9.75251 -9.30758 -9.02990 -8.97723 -8.50758 -6.12844 -4.19014 0.10698 0.63722 0.79483 3.02859 3.13034 3.25894 3.32122 3.34443 3.43584 3.77601 4.09281 4.15832 4.23264 4.36674 4.48164 4.56249 4.76841 4.92316 5.10918 5.22281 5.42999 5.49660 5.58442 5.63700 5.64327 5.74137 5.88293 6.41286 6.43835 7.31989 7.37377 7.79556 8.15652 8.84480 9.45693 10.98059 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.003650 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.972243 B = 7668.911232 C = 7919.552292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.569 4.569 11 S 2.393 3.607 12 O -0.932 6.932 13 O -0.936 6.936 14 C -0.589 4.589 15 C -0.089 4.089 16 C -0.087 4.087 17 C -0.099 4.099 18 C -0.123 4.123 19 C 0.068 3.932 20 F -0.126 7.126 21 C 0.081 3.919 22 F -0.115 7.115 23 H 0.265 0.735 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.276 -20.150 2.449 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.702 4.702 11 S 2.577 3.423 12 O -0.929 6.929 13 O -0.933 6.933 14 C -0.712 4.712 15 C -0.091 4.091 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.142 4.142 19 C 0.048 3.952 20 F -0.105 7.105 21 C 0.060 3.940 22 F -0.093 7.093 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.223 -20.246 2.351 21.040 hybrid contribution 1.393 1.000 -0.527 1.794 sum 6.616 -19.246 1.824 20.433 Atomic orbital electron populations 1.69957 1.06122 1.27226 1.49384 1.25066 0.94977 0.99530 0.94873 0.86460 0.79681 0.82823 0.78260 1.20446 1.20989 1.19746 1.21010 0.93074 0.89702 1.52417 0.91987 1.19006 0.92707 0.90052 0.99291 1.30215 1.13408 1.16359 1.10180 1.09124 0.78449 0.78968 0.75758 1.93572 1.68396 1.85623 1.45357 1.93543 1.68473 1.85819 1.45463 1.29591 1.20745 1.07978 1.12880 1.18979 1.02691 0.95249 0.92205 1.21206 0.97217 0.94780 0.97377 1.21102 0.97934 0.94518 0.98123 1.21179 1.01230 1.01515 0.90287 1.17613 1.03947 0.90772 0.82918 1.91542 1.91853 1.81493 1.45570 1.17550 1.03130 0.90948 0.82341 1.91579 1.91326 1.81841 1.44602 0.92495 0.94554 0.94551 0.85985 0.85962 0.83271 0.83771 0.83236 0.83551 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.57 -10.34 5.74 37.16 0.21 -10.12 16 11 S 2.39 40.95 4.70 -107.50 -0.51 40.44 16 12 O -0.93 -19.47 18.10 -57.83 -1.05 -20.52 16 13 O -0.94 -18.25 18.10 -57.83 -1.05 -19.30 16 14 C -0.59 -6.87 5.76 36.01 0.21 -6.67 16 15 C -0.09 -1.12 5.14 -104.57 -0.54 -1.66 16 16 C -0.09 -0.87 9.70 -39.58 -0.38 -1.25 16 17 C -0.10 -0.80 10.04 -39.58 -0.40 -1.20 16 18 C -0.12 -1.10 10.02 -39.53 -0.40 -1.49 16 19 C 0.07 0.82 7.31 -39.37 -0.29 0.54 16 20 F -0.13 -1.62 17.18 2.25 0.04 -1.58 16 21 C 0.08 1.13 7.25 -39.37 -0.29 0.84 16 22 F -0.12 -1.79 16.39 2.25 0.04 -1.75 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.12 1.87 8.14 -51.92 -0.42 1.45 16 27 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 28 H 0.15 1.17 8.08 -51.93 -0.42 0.75 16 29 H 0.14 1.44 7.64 -51.93 -0.40 1.05 16 30 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 307.64 15.07 4.64 4.64 Total: -1.00 -35.73 307.64 -7.91 -43.63 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.32 Total: -2.39 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: -2.42 Total: -33.51 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -2.09 Total: -39.82 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 40.95 SS G_CDS: -0.51 Total: 40.44 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.73 -7.91 -43.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790137355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.852 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds