Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00104 * 2 1 4 4 H 1.48495 * 109.47249 * 269.99801 * 3 2 1 5 5 H 1.48499 * 109.47122 * 29.99875 * 3 2 1 6 6 H 1.48497 * 109.47594 * 149.99696 * 3 2 1 7 7 C 1.37877 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47159 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47361 * 179.97438 * 10 9 7 12 12 O 1.42103 * 108.57823 * 65.50794 * 11 10 9 13 13 O 1.42101 * 108.58020 * 294.48519 * 11 10 9 14 14 C 1.81402 * 101.92298 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46853 * 179.97438 * 14 11 10 16 16 C 1.38256 * 120.00097 * 269.97615 * 15 14 11 17 17 C 1.38215 * 120.07338 * 180.02562 * 16 15 14 18 18 C 1.38259 * 120.06411 * 359.97438 * 17 16 15 19 19 C 1.38360 * 120.00548 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.04001 * 179.97438 * 19 18 17 21 21 C 1.38365 * 119.99959 * 90.00688 * 15 14 11 22 22 F 1.35108 * 120.03441 * 0.24624 * 21 15 14 23 23 H 0.96994 * 120.00036 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47629 * 59.99564 * 9 7 2 25 25 H 1.09002 * 109.47208 * 299.99396 * 9 7 2 26 26 H 1.08999 * 109.47560 * 59.99120 * 10 9 7 27 27 H 1.08999 * 109.46915 * 299.99383 * 10 9 7 28 28 H 1.08996 * 109.46538 * 60.00282 * 14 11 10 29 29 H 1.08993 * 109.47049 * 300.00248 * 14 11 10 30 30 H 1.08000 * 119.96449 * 0.02753 * 16 15 14 31 31 H 1.07997 * 119.96637 * 179.97438 * 17 16 15 32 32 H 1.08003 * 119.99482 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6279 -5.3463 -1.2242 13 8 0.6289 -5.3457 1.2274 14 6 2.6881 -6.4450 0.0004 15 6 2.1125 -7.8378 0.0015 16 6 1.8502 -8.4764 1.1994 17 6 1.3228 -9.7540 1.2022 18 6 1.0560 -10.3958 0.0070 19 6 1.3174 -9.7595 -1.1935 20 9 1.0574 -10.3862 -2.3617 21 6 1.8472 -8.4777 -1.1962 22 9 2.1085 -7.8565 -2.3672 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8721 -3.6043 0.8904 27 1 2.8718 -3.6044 -0.8895 28 1 3.3022 -6.3054 0.8899 29 1 3.3010 -6.3055 -0.8900 30 1 2.0575 -7.9764 2.1340 31 1 1.1189 -10.2514 2.1389 32 1 0.6435 -11.3940 0.0105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790137355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = -169.038272 kcal Electronic energy + Delta-G solvation = -20523.969154 eV Core-core repulsion = 16825.766207 eV Total energy + Delta-G solvation = -3698.202947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.60724 -49.69549 -40.13472 -37.99865 -37.04281 -35.87267 -34.17898 -33.12878 -31.40682 -28.90078 -27.50703 -23.98245 -23.88533 -22.93928 -19.91321 -19.07368 -18.86219 -18.46057 -18.11575 -17.73688 -17.14307 -17.03814 -16.80542 -16.43465 -16.07662 -15.84028 -15.57457 -15.17934 -14.87707 -14.46138 -14.39580 -13.72570 -13.60370 -13.42925 -13.14298 -13.05826 -12.93101 -12.89996 -12.75028 -12.45441 -12.22039 -12.15765 -12.05629 -11.67463 -11.04432 -10.64282 -9.96043 -9.86127 -8.25263 -6.39978 -1.15276 -0.18101 -0.06378 1.41505 1.43712 1.54764 1.84434 2.26073 2.38387 2.55181 2.72252 3.03786 3.08398 3.11173 3.31732 3.60104 3.76166 3.96979 4.05371 4.13875 4.18947 4.33810 4.64385 4.75527 4.80385 4.89749 5.04406 5.15729 5.30003 5.30473 5.65032 5.69401 6.06055 6.74903 7.30497 8.87206 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.003650 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.972243 B = 7668.911232 C = 7919.552292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.019 3.981 10 C -0.574 4.574 11 S 2.392 3.608 12 O -0.986 6.986 13 O -0.969 6.969 14 C -0.552 4.552 15 C -0.116 4.116 16 C -0.087 4.087 17 C -0.086 4.086 18 C -0.109 4.109 19 C 0.043 3.957 20 F -0.138 7.138 21 C 0.047 3.953 22 F -0.136 7.136 23 H 0.267 0.733 24 H -0.001 1.001 25 H 0.007 0.993 26 H 0.156 0.844 27 H 0.145 0.855 28 H 0.200 0.800 29 H 0.164 0.836 30 H 0.177 0.823 31 H 0.191 0.809 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.745 -21.735 4.317 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.579 4.579 8 H 0.098 0.902 9 C -0.019 4.019 10 C -0.705 4.705 11 S 2.583 3.417 12 O -0.983 6.983 13 O -0.966 6.966 14 C -0.680 4.680 15 C -0.118 4.118 16 C -0.106 4.106 17 C -0.104 4.104 18 C -0.128 4.128 19 C 0.023 3.977 20 F -0.117 7.117 21 C 0.026 3.974 22 F -0.115 7.115 23 H 0.075 0.925 24 H 0.018 0.982 25 H 0.025 0.975 26 H 0.174 0.826 27 H 0.163 0.837 28 H 0.217 0.783 29 H 0.182 0.818 30 H 0.194 0.806 31 H 0.208 0.792 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.662 -21.765 4.217 23.456 hybrid contribution 0.626 1.265 -1.055 1.762 sum 8.288 -20.499 3.163 22.336 Atomic orbital electron populations 1.70121 1.08229 1.28300 1.50951 1.26166 0.95845 1.04054 0.94384 0.85282 0.78734 0.77478 0.78570 1.19792 1.20906 1.17746 1.21580 0.94169 0.90706 1.51452 0.90157 1.18828 0.93749 0.93171 0.96199 1.30107 1.12356 1.15007 1.13007 1.08680 0.79577 0.79379 0.74112 1.93507 1.71253 1.86421 1.47106 1.93491 1.70715 1.86376 1.46052 1.29213 1.17472 1.04812 1.16549 1.19194 1.04381 0.95536 0.92705 1.21717 0.95998 0.95582 0.97334 1.21667 0.95558 0.93689 0.99447 1.21664 0.99298 1.02607 0.89185 1.18023 1.05107 0.90815 0.83759 1.91505 1.92089 1.81579 1.46492 1.18035 1.04991 0.92114 0.82308 1.91513 1.91768 1.82361 1.45864 0.92454 0.98222 0.97497 0.82610 0.83689 0.78280 0.81776 0.80596 0.79184 0.80047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.98 43.26 29.54 68.60 2.03 45.28 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.02 1.00 4.98 29.85 0.15 1.15 16 10 C -0.57 -20.62 5.74 71.98 0.41 -20.21 16 11 S 2.39 81.97 4.70 -56.49 -0.27 81.70 16 12 O -0.99 -43.28 18.10 -127.37 -2.30 -45.58 16 13 O -0.97 -38.06 18.10 -127.37 -2.31 -40.37 16 14 C -0.55 -11.28 5.76 71.24 0.41 -10.87 16 15 C -0.12 -2.63 5.14 -19.83 -0.10 -2.73 16 16 C -0.09 -1.40 9.70 22.27 0.22 -1.19 16 17 C -0.09 -0.99 10.04 22.27 0.22 -0.77 16 18 C -0.11 -1.57 10.02 22.30 0.22 -1.35 16 19 C 0.04 1.00 7.31 22.41 0.16 1.17 16 20 F -0.14 -3.55 17.18 44.97 0.77 -2.78 16 21 C 0.05 1.27 7.25 22.41 0.16 1.43 16 22 F -0.14 -4.36 16.39 44.97 0.74 -3.62 16 23 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 24 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 26 H 0.16 4.42 8.14 -2.39 -0.02 4.40 16 27 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 28 H 0.20 2.05 8.08 -2.39 -0.02 2.03 16 29 H 0.16 2.81 7.64 -2.39 -0.02 2.79 16 30 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 32 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -84.61 307.64 2.64 -81.97 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.14 Total: 3.90 kcal Atomic # 6 Polarization: -65.52 SS G_CDS: 2.55 Total: -62.97 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.28 Total: -57.53 kcal Atomic # 8 Polarization: -81.34 SS G_CDS: -4.61 Total: -85.95 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 1.51 Total: -6.40 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 81.97 SS G_CDS: -0.27 Total: 81.70 kcal Total: -84.61 2.64 -81.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790137355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.070 kcal (2) G-P(sol) polarization free energy of solvation -84.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds