Wall clock time and date at job start Tue Mar 31 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31453 * 1 3 3 Si 1.86795 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47269 * 270.00134 * 3 2 1 5 5 H 1.48503 * 109.47131 * 29.99988 * 3 2 1 6 6 H 1.48498 * 109.46956 * 150.00058 * 3 2 1 7 7 C 1.38750 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99758 * 179.97438 * 7 2 1 9 9 O 1.34919 * 120.00434 * 359.97438 * 7 2 1 10 10 C 1.34307 * 116.99819 * 179.97438 * 9 7 2 11 11 O 1.21208 * 120.00217 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99728 * 180.02562 * 10 9 7 13 13 H 1.09004 * 109.47113 * 305.00116 * 12 10 9 14 14 O 1.42905 * 109.47264 * 185.00118 * 12 10 9 15 15 C 1.50699 * 109.47227 * 65.00151 * 12 10 9 16 16 C 1.38255 * 119.99957 * 85.00129 * 15 12 10 17 17 C 1.38220 * 119.99662 * 180.02562 * 16 15 12 18 18 C 1.38248 * 120.00285 * 359.95507 * 17 16 15 19 19 C 1.38214 * 120.00168 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00445 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.46648 * 359.97438 * 20 19 18 22 22 F 1.39897 * 109.47252 * 119.99657 * 20 19 18 23 23 F 1.39904 * 109.47266 * 240.00297 * 20 19 18 24 24 C 1.38216 * 119.99689 * 264.72432 * 15 12 10 25 25 H 0.97000 * 119.99652 * 359.97438 * 1 2 3 26 26 H 0.96702 * 113.99404 * 300.00033 * 14 12 10 27 27 H 1.08002 * 120.00162 * 359.97438 * 16 15 12 28 28 H 1.08001 * 119.99622 * 179.97438 * 17 16 15 29 29 H 1.07995 * 120.00561 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.00478 * 0.02562 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4460 2.6526 0.7000 6 1 3.5460 1.4401 0.7000 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2755 -3.4331 -0.0020 12 6 1.3809 -4.8392 -0.0023 13 1 0.6910 -4.8959 0.8398 14 8 2.3605 -5.8731 0.1141 15 6 0.6173 -5.0133 -1.2898 16 6 1.2616 -5.4893 -2.4166 17 6 0.5613 -5.6485 -3.5976 18 6 -0.7835 -5.3326 -3.6519 19 6 -1.4280 -4.8582 -2.5250 20 6 -2.8940 -4.5144 -2.5839 21 9 -3.3782 -4.7566 -3.8739 22 9 -3.5954 -5.3037 -1.6662 23 9 -3.0693 -3.1631 -2.2666 24 6 -0.7284 -4.7026 -1.3425 25 1 -0.4850 0.8401 0.0004 26 1 3.0090 -5.8829 -0.6032 27 1 2.3122 -5.7360 -2.3743 28 1 1.0647 -6.0199 -4.4780 29 1 -1.3308 -5.4574 -4.5745 30 1 -1.2327 -4.3346 -0.4612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803807603.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:16 Heat of formation + Delta-G solvation = -253.518037 kcal Electronic energy + Delta-G solvation = -23127.864560 eV Core-core repulsion = 18859.785120 eV Total energy + Delta-G solvation = -4268.079441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.02859 -47.58622 -47.43113 -40.06085 -38.77966 -36.71008 -34.90711 -32.33681 -31.97172 -31.63245 -27.40241 -25.96983 -25.09451 -22.58424 -21.76128 -20.38831 -18.44331 -18.33294 -18.25633 -17.83507 -17.41858 -16.38975 -15.95665 -15.71364 -14.89336 -14.58160 -14.40229 -14.34934 -14.22679 -13.96259 -13.89937 -13.62565 -13.60905 -13.42299 -12.93670 -12.82446 -12.58104 -12.02756 -11.79575 -11.53305 -11.25889 -11.16094 -10.67826 -10.48782 -10.45846 -9.92105 -9.38040 -9.16486 -8.66729 -8.64425 -6.48910 -4.17116 0.94574 1.23497 2.76048 3.01132 3.14429 3.20402 3.29578 3.48439 3.79213 3.84421 4.11120 4.34196 4.53500 4.62119 4.66902 4.81123 4.97285 5.07132 5.16924 5.36906 5.46315 5.72991 5.85358 6.14650 6.21991 6.37944 6.53049 6.72310 7.30244 7.60161 7.84774 8.55775 8.98760 9.70041 10.67677 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.006137 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.908767 B = 4561.217112 C = 5851.453086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.385 4.385 8 H 0.096 0.904 9 O -0.202 6.202 10 C 0.366 3.634 11 O -0.548 6.548 12 C 0.169 3.831 13 H 0.136 0.864 14 O -0.530 6.530 15 C -0.106 4.106 16 C -0.076 4.076 17 C -0.121 4.121 18 C -0.074 4.074 19 C -0.182 4.182 20 C 0.509 3.491 21 F -0.182 7.182 22 F -0.179 7.179 23 F -0.167 7.167 24 C -0.036 4.036 25 H 0.271 0.729 26 H 0.380 0.620 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 -10.618 -6.948 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.160 4.160 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.461 4.461 8 H 0.114 0.886 9 O -0.109 6.109 10 C 0.211 3.789 11 O -0.445 6.445 12 C 0.108 3.892 13 H 0.153 0.847 14 O -0.336 6.336 15 C -0.107 4.107 16 C -0.094 4.094 17 C -0.139 4.139 18 C -0.092 4.092 19 C -0.183 4.183 20 C 0.455 3.545 21 F -0.163 7.163 22 F -0.160 7.160 23 F -0.148 7.148 24 C -0.054 4.054 25 H 0.081 0.919 26 H 0.229 0.771 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.621 -10.546 -6.403 13.175 hybrid contribution 0.440 1.141 -0.536 1.335 sum -4.181 -9.406 -6.939 12.414 Atomic orbital electron populations 1.69990 1.05949 1.27937 1.45339 1.25354 0.95842 0.98881 0.95942 0.85680 0.79112 0.79677 0.78804 1.19827 1.20191 1.19029 1.21234 0.92412 0.79669 1.52760 0.88628 1.83859 1.39296 1.13287 1.74427 1.23696 0.87186 0.87755 0.80235 1.90577 1.15290 1.87508 1.51165 1.20051 0.88975 0.84180 0.96004 0.84663 1.86605 1.43567 1.50342 1.53096 1.20204 0.94017 1.00247 0.96194 1.21118 1.00130 0.96031 0.92112 1.21028 0.93683 1.01078 0.98070 1.20975 0.95152 0.95952 0.97118 1.19893 0.91936 1.09140 0.97316 1.18270 0.87842 0.75061 0.73321 1.93136 1.89795 1.94237 1.39149 1.93201 1.81328 1.74459 1.67040 1.93295 1.96148 1.32917 1.92487 1.20725 0.93546 0.93979 0.97173 0.91873 0.77082 0.85162 0.84720 0.84557 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 2 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 3 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.38 -11.14 9.64 30.92 0.30 -10.84 16 8 H 0.10 2.80 6.86 -52.49 -0.36 2.44 16 9 O -0.20 -5.58 9.74 -20.69 -0.20 -5.78 16 10 C 0.37 8.70 7.21 36.01 0.26 8.96 16 11 O -0.55 -14.25 15.56 -25.77 -0.40 -14.65 16 12 C 0.17 3.02 3.74 -29.03 -0.11 2.91 16 13 H 0.14 2.21 8.05 -51.93 -0.42 1.79 16 14 O -0.53 -8.65 12.79 -55.10 -0.70 -9.36 16 15 C -0.11 -1.71 4.98 -104.62 -0.52 -2.23 16 16 C -0.08 -1.04 9.33 -39.58 -0.37 -1.41 16 17 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 18 C -0.07 -0.93 9.43 -39.59 -0.37 -1.31 16 19 C -0.18 -2.68 5.37 -104.62 -0.56 -3.24 16 20 C 0.51 7.42 3.32 36.00 0.12 7.54 16 21 F -0.18 -2.42 15.97 2.25 0.04 -2.39 16 22 F -0.18 -2.54 17.23 2.25 0.04 -2.50 16 23 F -0.17 -2.84 17.24 2.25 0.04 -2.81 16 24 C -0.04 -0.58 9.23 -39.58 -0.37 -0.95 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.38 5.20 7.14 45.56 0.33 5.52 16 27 H 0.13 1.50 6.61 -52.49 -0.35 1.15 16 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.14 1.40 7.16 -52.49 -0.38 1.02 16 30 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 291.10 15.07 4.39 4.39 Total: -1.00 -32.98 291.10 -4.34 -37.32 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -1.16 Total: 4.83 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.12 Total: -1.25 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.76 Total: -23.77 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.31 Total: -29.79 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.11 Total: -7.70 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.98 -4.34 -37.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803807603.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.200 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds