Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31453 * 1 3 3 Si 1.86795 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47269 * 270.00134 * 3 2 1 5 5 H 1.48503 * 109.47131 * 29.99988 * 3 2 1 6 6 H 1.48498 * 109.46956 * 150.00058 * 3 2 1 7 7 C 1.38750 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99758 * 179.97438 * 7 2 1 9 9 O 1.34919 * 120.00434 * 359.97438 * 7 2 1 10 10 C 1.34307 * 116.99819 * 179.97438 * 9 7 2 11 11 O 1.21208 * 120.00217 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99728 * 180.02562 * 10 9 7 13 13 H 1.09004 * 109.47113 * 305.00116 * 12 10 9 14 14 O 1.42905 * 109.47264 * 185.00118 * 12 10 9 15 15 C 1.50699 * 109.47227 * 65.00151 * 12 10 9 16 16 C 1.38255 * 119.99957 * 85.00129 * 15 12 10 17 17 C 1.38220 * 119.99662 * 180.02562 * 16 15 12 18 18 C 1.38248 * 120.00285 * 359.95507 * 17 16 15 19 19 C 1.38214 * 120.00168 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00445 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.46648 * 359.97438 * 20 19 18 22 22 F 1.39897 * 109.47252 * 119.99657 * 20 19 18 23 23 F 1.39904 * 109.47266 * 240.00297 * 20 19 18 24 24 C 1.38216 * 119.99689 * 264.72432 * 15 12 10 25 25 H 0.97000 * 119.99652 * 359.97438 * 1 2 3 26 26 H 0.96702 * 113.99404 * 300.00033 * 14 12 10 27 27 H 1.08002 * 120.00162 * 359.97438 * 16 15 12 28 28 H 1.08001 * 119.99622 * 179.97438 * 17 16 15 29 29 H 1.07995 * 120.00561 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.00478 * 0.02562 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4460 2.6526 0.7000 6 1 3.5460 1.4401 0.7000 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2755 -3.4331 -0.0020 12 6 1.3809 -4.8392 -0.0023 13 1 0.6910 -4.8959 0.8398 14 8 2.3605 -5.8731 0.1141 15 6 0.6173 -5.0133 -1.2898 16 6 1.2616 -5.4893 -2.4166 17 6 0.5613 -5.6485 -3.5976 18 6 -0.7835 -5.3326 -3.6519 19 6 -1.4280 -4.8582 -2.5250 20 6 -2.8940 -4.5144 -2.5839 21 9 -3.3782 -4.7566 -3.8739 22 9 -3.5954 -5.3037 -1.6662 23 9 -3.0693 -3.1631 -2.2666 24 6 -0.7284 -4.7026 -1.3425 25 1 -0.4850 0.8401 0.0004 26 1 3.0090 -5.8829 -0.6032 27 1 2.3122 -5.7360 -2.3743 28 1 1.0647 -6.0199 -4.4780 29 1 -1.3308 -5.4574 -4.5745 30 1 -1.2327 -4.3346 -0.4612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803807603.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -274.671241 kcal Electronic energy + Delta-G solvation = -23128.781832 eV Core-core repulsion = 18859.785120 eV Total energy + Delta-G solvation = -4268.996712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.20076 -48.71730 -48.66139 -41.58899 -40.32149 -38.24292 -36.80301 -34.36971 -33.18560 -32.77194 -28.95995 -27.11984 -27.02989 -23.74293 -23.11858 -21.98107 -19.97356 -19.58300 -19.51326 -19.42293 -19.15303 -17.76276 -17.29483 -17.12828 -16.55744 -16.22019 -16.15253 -15.57679 -15.46989 -15.10464 -15.06956 -14.87983 -14.82112 -14.72609 -14.59953 -14.09187 -13.78567 -13.69651 -13.31803 -13.10046 -12.82014 -12.43962 -12.31818 -12.20801 -12.09605 -11.94078 -11.03898 -10.72655 -10.26518 -9.96410 -8.56575 -6.36838 -0.15567 0.12052 1.21511 1.32631 1.49414 1.53638 1.61910 2.02837 2.33213 2.60637 2.69106 2.92503 2.99288 3.23215 3.40335 3.42291 3.74736 3.95402 4.06424 4.17458 4.38290 4.55899 4.62567 4.77910 5.07478 5.11822 5.18704 5.27535 5.68316 5.77635 6.36388 6.55942 6.87595 7.66417 8.62251 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.006137 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.908767 B = 4561.217112 C = 5851.453086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.001 3.999 3 Si 1.013 2.987 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.422 4.422 8 H 0.082 0.918 9 O -0.229 6.229 10 C 0.368 3.632 11 O -0.573 6.573 12 C 0.184 3.816 13 H 0.146 0.854 14 O -0.527 6.527 15 C -0.127 4.127 16 C -0.080 4.080 17 C -0.109 4.109 18 C -0.067 4.067 19 C -0.195 4.195 20 C 0.512 3.488 21 F -0.172 7.172 22 F -0.178 7.178 23 F -0.186 7.186 24 C -0.056 4.056 25 H 0.279 0.721 26 H 0.392 0.608 27 H 0.152 0.848 28 H 0.177 0.823 29 H 0.165 0.835 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.876 -11.135 -8.579 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.201 4.201 3 Si 0.832 3.168 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.100 0.900 9 O -0.137 6.137 10 C 0.215 3.785 11 O -0.472 6.472 12 C 0.123 3.877 13 H 0.163 0.837 14 O -0.334 6.334 15 C -0.128 4.128 16 C -0.098 4.098 17 C -0.127 4.127 18 C -0.085 4.085 19 C -0.196 4.196 20 C 0.458 3.542 21 F -0.153 7.153 22 F -0.160 7.160 23 F -0.167 7.167 24 C -0.074 4.074 25 H 0.088 0.912 26 H 0.243 0.757 27 H 0.170 0.830 28 H 0.195 0.805 29 H 0.182 0.818 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.142 -11.097 -8.040 14.315 hybrid contribution 0.303 1.139 -0.078 1.181 sum -3.839 -9.958 -8.118 13.409 Atomic orbital electron populations 1.70078 1.07521 1.29416 1.45944 1.26490 0.96839 1.02201 0.94564 0.84681 0.77799 0.74759 0.79533 1.18483 1.18476 1.18721 1.21402 0.92150 0.81061 1.55180 0.90031 1.83892 1.40097 1.13998 1.75678 1.25007 0.87166 0.88865 0.77488 1.90539 1.16673 1.88219 1.51727 1.19974 0.88958 0.80852 0.97941 0.83656 1.86598 1.43788 1.49066 1.53986 1.20069 0.93997 1.02583 0.96157 1.21492 1.01324 0.95102 0.91870 1.21508 0.93250 0.99294 0.98632 1.21408 0.95738 0.94156 0.97200 1.19999 0.91906 1.10013 0.97729 1.18261 0.88074 0.74222 0.73619 1.93149 1.89704 1.94082 1.38356 1.93199 1.81354 1.74267 1.67141 1.93258 1.96265 1.34492 1.92718 1.20729 0.94007 0.95035 0.97674 0.91171 0.75651 0.83044 0.80515 0.81756 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.07 13.67 21.62 0.30 -51.77 16 2 C 0.00 0.03 5.49 84.87 0.47 0.50 16 3 Si 1.01 42.94 29.55 68.60 2.03 44.97 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.42 -25.17 9.64 67.94 0.66 -24.52 16 8 H 0.08 4.94 6.86 -2.91 -0.02 4.92 16 9 O -0.23 -13.09 9.74 14.92 0.15 -12.95 16 10 C 0.37 17.85 7.21 71.24 0.51 18.36 16 11 O -0.57 -30.30 15.56 27.20 0.42 -29.88 16 12 C 0.18 6.57 3.74 29.10 0.11 6.68 16 13 H 0.15 4.84 8.05 -2.38 -0.02 4.82 16 14 O -0.53 -16.61 12.79 -129.99 -1.66 -18.27 16 15 C -0.13 -4.04 4.98 -19.87 -0.10 -4.14 16 16 C -0.08 -2.00 9.33 22.27 0.21 -1.79 16 17 C -0.11 -2.19 10.05 22.27 0.22 -1.97 16 18 C -0.07 -1.50 9.43 22.27 0.21 -1.29 16 19 C -0.20 -5.58 5.37 -19.86 -0.11 -5.69 16 20 C 0.51 14.66 3.32 71.24 0.24 14.90 16 21 F -0.17 -4.29 15.97 44.97 0.72 -3.57 16 22 F -0.18 -5.02 17.23 44.97 0.78 -4.25 16 23 F -0.19 -6.42 17.24 44.97 0.78 -5.64 16 24 C -0.06 -1.83 9.23 22.27 0.21 -1.62 16 25 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 26 H 0.39 10.09 7.14 -74.06 -0.53 9.57 16 27 H 0.15 3.03 6.61 -2.91 -0.02 3.01 16 28 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.16 2.71 7.16 -2.91 -0.02 2.69 16 30 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -72.82 291.10 6.81 -66.01 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.70 Total: 15.94 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 2.62 Total: -0.58 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.30 Total: -51.77 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -1.09 Total: -61.10 kcal Atomic # 9 Polarization: -15.73 SS G_CDS: 2.27 Total: -13.46 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -72.82 6.81 -66.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803807603.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.663 kcal (2) G-P(sol) polarization free energy of solvation -72.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds