Wall clock time and date at job start Tue Mar 31 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86798 * 120.00511 * 2 1 4 4 H 1.48501 * 109.46997 * 239.99992 * 3 2 1 5 5 H 1.48496 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47350 * 119.99854 * 3 2 1 7 7 C 1.38755 * 119.99432 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00005 * 179.97438 * 7 2 1 9 9 O 1.34921 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.34309 * 117.00232 * 179.97438 * 9 7 2 11 11 O 1.21219 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00097 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.46959 * 55.00251 * 12 10 9 14 14 O 1.42903 * 109.47184 * 175.00508 * 12 10 9 15 15 C 1.50701 * 109.47269 * 295.00336 * 12 10 9 16 16 C 1.38264 * 119.99691 * 279.72714 * 15 12 10 17 17 C 1.38213 * 119.99558 * 179.76183 * 16 15 12 18 18 C 1.38261 * 119.99915 * 0.50967 * 17 16 15 19 19 C 1.38210 * 119.99997 * 359.74731 * 18 17 16 20 20 C 1.50705 * 119.99797 * 179.97438 * 19 18 17 21 21 F 1.39899 * 109.46912 * 270.01455 * 20 19 18 22 22 F 1.39898 * 109.47376 * 30.01307 * 20 19 18 23 23 F 1.39902 * 109.47110 * 150.01824 * 20 19 18 24 24 C 1.38210 * 119.99832 * 99.99692 * 15 12 10 25 25 H 0.97003 * 119.99304 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00234 * 59.99791 * 14 12 10 27 27 H 1.07997 * 120.00037 * 359.97438 * 16 15 12 28 28 H 1.08000 * 119.99981 * 180.23035 * 17 16 15 29 29 H 1.08005 * 119.99522 * 179.71923 * 18 17 16 30 30 H 1.07994 * 120.00109 * 0.02562 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6176 0.0000 4 1 3.1023 1.6962 -1.2125 5 1 1.2836 2.7464 0.0006 6 1 3.1023 1.6963 1.2125 7 6 2.0080 -1.2017 0.0005 8 1 3.0881 -1.2018 0.0001 9 8 1.3334 -2.3701 0.0016 10 6 2.0648 -3.4966 0.0015 11 8 3.2753 -3.4333 0.0010 12 6 1.3805 -4.8393 0.0021 13 1 0.6901 -4.8956 -0.8395 14 8 2.3600 -5.8732 -0.1154 15 6 0.6179 -5.0140 1.2901 16 6 1.2825 -5.3968 2.4405 17 6 0.5838 -5.5522 3.6229 18 6 -0.7813 -5.3351 3.6528 19 6 -1.4464 -4.9576 2.5016 20 6 -2.9345 -4.7216 2.5341 21 9 -3.6026 -5.9171 2.2486 22 9 -3.3076 -4.2710 3.8049 23 9 -3.2748 -3.7577 1.5790 24 6 -0.7467 -4.7970 1.3200 25 1 -0.4849 0.8401 -0.0004 26 1 3.0091 -5.8834 0.6013 27 1 2.3480 -5.5710 2.4159 28 1 1.1035 -5.8475 4.5224 29 1 -1.3279 -5.4610 4.5758 30 1 -1.2666 -4.5026 0.4203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803807605.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:17 Heat of formation + Delta-G solvation = -275.065699 kcal Electronic energy + Delta-G solvation = -23091.013533 eV Core-core repulsion = 18821.999715 eV Total energy + Delta-G solvation = -4269.013817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.19869 -48.71499 -48.65965 -41.58585 -40.32065 -38.23897 -36.79718 -34.37096 -33.20390 -32.76290 -28.96008 -27.11781 -27.03232 -23.71759 -23.15311 -21.98662 -19.97052 -19.57601 -19.51451 -19.42292 -19.13851 -17.74125 -17.31160 -17.09451 -16.57541 -16.19873 -16.15591 -15.56680 -15.51237 -15.14158 -15.04918 -14.88794 -14.81540 -14.75085 -14.58015 -14.05003 -13.78638 -13.69437 -13.32671 -13.10893 -12.82829 -12.42577 -12.33147 -12.20347 -12.11088 -11.93671 -11.02620 -10.72625 -10.27028 -9.97228 -8.56398 -6.36811 -0.15955 0.12062 1.22370 1.32692 1.48413 1.54257 1.61966 2.02979 2.33039 2.59983 2.68992 2.92417 2.98916 3.24694 3.40607 3.42641 3.74433 3.95086 4.06077 4.16979 4.37733 4.55534 4.62571 4.78021 5.06613 5.11569 5.18081 5.27405 5.67740 5.77632 6.36407 6.55939 6.87617 7.66584 8.62288 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.005950 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.338030 B = 4704.802181 C = 5920.071530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.001 3.999 3 Si 1.013 2.987 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.082 0.918 9 O -0.229 6.229 10 C 0.368 3.632 11 O -0.573 6.573 12 C 0.184 3.816 13 H 0.146 0.854 14 O -0.527 6.527 15 C -0.127 4.127 16 C -0.081 4.081 17 C -0.110 4.110 18 C -0.065 4.065 19 C -0.195 4.195 20 C 0.513 3.487 21 F -0.175 7.175 22 F -0.175 7.175 23 F -0.185 7.185 24 C -0.057 4.057 25 H 0.279 0.721 26 H 0.392 0.608 27 H 0.149 0.851 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 -11.045 8.521 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.201 4.201 3 Si 0.832 3.168 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.499 4.499 8 H 0.100 0.900 9 O -0.137 6.137 10 C 0.215 3.785 11 O -0.471 6.471 12 C 0.123 3.877 13 H 0.163 0.837 14 O -0.335 6.335 15 C -0.127 4.127 16 C -0.099 4.099 17 C -0.127 4.127 18 C -0.083 4.083 19 C -0.196 4.196 20 C 0.459 3.541 21 F -0.157 7.157 22 F -0.157 7.157 23 F -0.166 7.166 24 C -0.075 4.075 25 H 0.088 0.912 26 H 0.243 0.757 27 H 0.167 0.833 28 H 0.194 0.806 29 H 0.181 0.819 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.197 -11.009 7.985 14.233 hybrid contribution 0.322 1.077 0.087 1.127 sum -3.875 -9.932 8.072 13.372 Atomic orbital electron populations 1.70069 1.07549 1.29493 1.45902 1.26492 0.96833 1.02213 0.94533 0.84742 0.77690 0.74515 0.79829 1.18603 1.18474 1.18531 1.21375 0.92169 0.81065 1.55262 0.89993 1.83895 1.40106 1.14005 1.75675 1.25001 0.87161 0.88847 0.77495 1.90541 1.16651 1.88221 1.51732 1.19980 0.88986 0.80869 0.97913 0.83671 1.86596 1.43758 1.49123 1.53981 1.20070 0.93911 1.02859 0.95909 1.21486 1.01419 0.95099 0.91900 1.21491 0.93249 0.99199 0.98780 1.21351 0.95607 0.94354 0.96989 1.20002 0.91259 1.10893 0.97484 1.18243 0.88458 0.73935 0.73459 1.93211 1.82846 1.46261 1.93349 1.93174 1.92910 1.89359 1.40238 1.93223 1.93678 1.64741 1.64961 1.20795 0.93887 0.94878 0.97986 0.91153 0.75674 0.83323 0.80630 0.81904 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.04 13.67 21.62 0.30 -51.75 16 2 C 0.00 0.04 5.49 84.88 0.47 0.51 16 3 Si 1.01 42.80 29.55 68.60 2.03 44.83 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.42 -25.17 9.65 67.94 0.66 -24.52 16 8 H 0.08 4.94 6.86 -2.91 -0.02 4.92 16 9 O -0.23 -13.10 9.74 14.87 0.14 -12.95 16 10 C 0.37 17.83 7.20 71.24 0.51 18.35 16 11 O -0.57 -30.21 15.56 27.17 0.42 -29.79 16 12 C 0.18 6.57 3.73 29.10 0.11 6.68 16 13 H 0.15 4.83 8.00 -2.39 -0.02 4.81 16 14 O -0.53 -16.72 12.84 -129.98 -1.67 -18.38 16 15 C -0.13 -4.03 4.95 -19.86 -0.10 -4.13 16 16 C -0.08 -2.07 9.32 22.27 0.21 -1.86 16 17 C -0.11 -2.24 10.05 22.27 0.22 -2.02 16 18 C -0.07 -1.45 9.40 22.27 0.21 -1.24 16 19 C -0.20 -5.50 5.45 -19.86 -0.11 -5.61 16 20 C 0.51 14.34 3.36 71.24 0.24 14.58 16 21 F -0.18 -4.58 17.30 44.97 0.78 -3.80 16 22 F -0.18 -4.65 16.46 44.97 0.74 -3.91 16 23 F -0.18 -6.07 16.46 44.97 0.74 -5.33 16 24 C -0.06 -1.83 9.02 22.27 0.20 -1.63 16 25 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.39 10.19 7.24 -74.06 -0.54 9.65 16 27 H 0.15 3.13 6.78 -2.91 -0.02 3.11 16 28 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.16 2.65 7.60 -2.91 -0.02 2.63 16 30 H 0.13 4.33 7.58 -2.91 -0.02 4.31 16 Total: -1.00 -72.43 290.96 6.79 -65.64 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.69 Total: 16.33 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 2.62 Total: -0.89 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.30 Total: -51.75 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.10 Total: -61.13 kcal Atomic # 9 Polarization: -15.30 SS G_CDS: 2.26 Total: -13.04 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.43 6.79 -65.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803807605.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.422 kcal (2) G-P(sol) polarization free energy of solvation -72.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds