Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34944 * 126.02735 * 2 1 4 4 C 1.35306 * 107.76573 * 179.89872 * 3 2 1 5 5 C 1.50701 * 126.04855 * 180.13324 * 4 3 2 6 6 O 1.45203 * 109.46902 * 0.24882 * 5 4 3 7 7 C 1.34225 * 116.99744 * 179.97438 * 6 5 4 8 8 O 1.20816 * 120.00530 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99578 * 179.97438 * 7 6 5 10 10 S 1.81006 * 109.46871 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99712 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00466 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99886 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99938 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99989 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47055 * 60.00233 * 15 13 11 17 17 H 1.48503 * 109.46784 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47236 * 299.99542 * 15 13 11 19 19 C 1.39966 * 107.90630 * 0.36968 * 4 3 2 20 20 Cl 1.73607 * 125.90936 * 179.77327 * 19 4 3 21 21 N 1.30891 * 108.17810 * 359.76805 * 19 4 3 22 22 H 1.09001 * 109.47060 * 269.71732 * 1 2 3 23 23 H 1.09004 * 109.47073 * 29.71221 * 1 2 3 24 24 H 1.09000 * 109.47212 * 149.71304 * 1 2 3 25 25 H 1.07997 * 126.11654 * 0.03655 * 3 2 1 26 26 H 1.08998 * 109.46827 * 120.24225 * 5 4 3 27 27 H 1.08992 * 109.47431 * 240.24938 * 5 4 3 28 28 H 1.09001 * 109.47779 * 300.00698 * 9 7 6 29 29 H 1.08995 * 109.46684 * 60.00971 * 9 7 6 30 30 H 0.96998 * 120.00194 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6674 0.0023 5 6 4.7676 1.5465 0.0059 6 8 4.3620 2.9408 0.0126 7 6 5.3402 3.8599 0.0171 8 8 6.4969 3.5112 0.0150 9 6 4.9955 5.3270 0.0236 10 16 6.5188 6.3046 0.0278 11 6 5.8390 7.9302 0.0357 12 1 4.7677 8.0676 0.0372 13 6 6.6802 9.0342 0.0402 14 7 7.9859 8.8667 0.0390 15 14 5.9596 10.7575 0.0494 16 1 5.1241 10.9382 1.2637 17 1 7.0604 11.7543 0.0537 18 1 5.1215 10.9501 -1.1613 19 6 3.5350 -0.7323 -0.0049 20 17 4.9348 -1.7591 -0.0108 21 7 2.2889 -1.1329 -0.0062 22 1 -0.3633 -0.0051 1.0277 23 1 -0.3633 0.8926 -0.5094 24 1 -0.3634 -0.8874 -0.5183 25 1 1.9276 2.1193 0.0006 26 1 5.3627 1.3371 0.8948 27 1 5.3622 1.3454 -0.8851 28 1 4.4123 5.5672 -0.8654 29 1 4.4120 5.5591 0.9145 30 1 8.5738 9.6382 0.0417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816153478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = -11.211496 kcal Electronic energy + Delta-G solvation = -17423.659989 eV Core-core repulsion = 14180.557261 eV Total energy + Delta-G solvation = -3243.102728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.67583 -39.95207 -37.04096 -36.25073 -33.65964 -32.49702 -31.59446 -29.70918 -28.01062 -25.64557 -25.26615 -21.94390 -20.99743 -20.46830 -18.00865 -17.33833 -17.06745 -16.51560 -15.87386 -15.68183 -15.29725 -14.85894 -14.20422 -14.03244 -13.78532 -13.67482 -13.36317 -12.96188 -12.68723 -12.14025 -11.98319 -11.94045 -11.84301 -11.11486 -11.07598 -10.98174 -10.82070 -10.68756 -10.02251 -9.92607 -9.62095 -9.11992 -8.75125 -8.37336 -6.61448 -6.28264 -4.01183 1.17060 1.37983 2.15450 2.45488 2.62177 2.65745 3.20627 3.22198 3.26213 3.48805 4.13532 4.14634 4.53272 4.72906 4.78753 4.99080 5.03614 5.07430 5.17078 5.29035 5.36847 5.42285 5.74186 5.75750 5.78700 6.05106 6.50898 6.67123 7.06905 7.53565 8.15440 8.28650 9.16957 10.79155 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029839 B = 0.002979 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.152109 B = 9397.815861 C =10310.218752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.364 5.364 3 C 0.096 3.904 4 C -0.230 4.230 5 C 0.148 3.852 6 O -0.362 6.362 7 C 0.481 3.519 8 O -0.484 6.484 9 C -0.128 4.128 10 S -0.057 6.057 11 C -0.538 4.538 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.921 3.079 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.273 1.273 19 C 0.133 3.867 20 Cl 0.011 6.989 21 N -0.280 5.280 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.192 0.808 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.819 -17.178 -0.157 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.148 5.148 3 C -0.050 4.050 4 C -0.242 4.242 5 C 0.073 3.927 6 O -0.280 6.280 7 C 0.322 3.678 8 O -0.369 6.369 9 C -0.276 4.276 10 S 0.169 5.831 11 C -0.686 4.686 12 H 0.094 0.906 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.747 3.253 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.198 1.198 19 C -0.058 4.058 20 Cl 0.038 6.962 21 N -0.105 5.105 22 H 0.098 0.902 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.209 0.791 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.024 -18.666 -0.161 23.347 hybrid contribution -1.052 1.942 0.021 2.208 sum -15.075 -16.724 -0.140 22.516 Atomic orbital electron populations 1.21999 0.72911 1.05046 1.03963 1.48307 1.06809 1.03055 1.56599 1.22443 0.89480 0.94035 0.99088 1.19556 0.95010 0.91410 1.18272 1.20887 0.92253 0.76363 1.03182 1.86394 1.40139 1.16415 1.85036 1.23269 0.83594 0.88479 0.72494 1.90681 1.20776 1.81654 1.43822 1.23292 1.08313 0.89546 1.06418 1.85455 1.01367 0.99384 1.96880 1.22802 0.95369 0.90829 1.59577 0.90640 1.25001 0.94666 0.99485 0.94324 1.69999 1.02287 1.31476 1.46431 0.86182 0.78591 0.81614 0.78881 1.19850 1.20779 1.19845 1.22351 0.89460 0.89959 1.04056 1.98409 1.33692 1.67158 1.96895 1.77356 0.99570 1.08345 1.25269 0.90173 0.88682 0.88959 0.79062 0.90036 0.90037 0.87918 0.87920 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.47 59.85 0.69 1.16 16 2 N -0.36 -3.48 4.01 -68.16 -0.27 -3.76 16 3 C 0.10 0.96 10.82 -17.23 -0.19 0.77 16 4 C -0.23 -2.78 6.08 -105.02 -0.64 -3.42 16 5 C 0.15 1.98 5.88 36.01 0.21 2.20 16 6 O -0.36 -5.38 9.51 -39.25 -0.37 -5.76 16 7 C 0.48 8.85 7.97 36.01 0.29 9.14 16 8 O -0.48 -10.39 15.61 -18.74 -0.29 -10.69 16 9 C -0.13 -2.49 6.27 36.01 0.23 -2.26 16 10 S -0.06 -1.50 20.58 -107.50 -2.21 -3.71 16 11 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 12 H 0.08 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.50 13.22 55.49 0.73 -24.77 16 15 Si 0.92 20.82 29.55 -169.99 -5.02 15.80 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 C 0.13 1.64 7.84 -17.31 -0.14 1.51 16 20 Cl 0.01 0.12 29.16 -51.86 -1.51 -1.39 16 21 N -0.28 -3.42 12.58 32.94 0.41 -3.01 16 22 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.19 1.47 7.84 -52.49 -0.41 1.05 16 26 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 27 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 28 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 29 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -33.62 307.80 -6.17 -39.79 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -2.91 Total: -3.70 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 0.65 Total: -3.45 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.87 Total: -31.53 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.67 Total: -16.44 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.51 Total: -1.39 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.62 -6.17 -39.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816153478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.577 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds