Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34944 * 126.02735 * 2 1 4 4 C 1.35306 * 107.76573 * 179.89872 * 3 2 1 5 5 C 1.50701 * 126.04855 * 180.13324 * 4 3 2 6 6 O 1.45203 * 109.46902 * 0.24882 * 5 4 3 7 7 C 1.34225 * 116.99744 * 179.97438 * 6 5 4 8 8 O 1.20816 * 120.00530 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99578 * 179.97438 * 7 6 5 10 10 S 1.81006 * 109.46871 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99712 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00466 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99886 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99938 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99989 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47055 * 60.00233 * 15 13 11 17 17 H 1.48503 * 109.46784 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47236 * 299.99542 * 15 13 11 19 19 C 1.39966 * 107.90630 * 0.36968 * 4 3 2 20 20 Cl 1.73607 * 125.90936 * 179.77327 * 19 4 3 21 21 N 1.30891 * 108.17810 * 359.76805 * 19 4 3 22 22 H 1.09001 * 109.47060 * 269.71732 * 1 2 3 23 23 H 1.09004 * 109.47073 * 29.71221 * 1 2 3 24 24 H 1.09000 * 109.47212 * 149.71304 * 1 2 3 25 25 H 1.07997 * 126.11654 * 0.03655 * 3 2 1 26 26 H 1.08998 * 109.46827 * 120.24225 * 5 4 3 27 27 H 1.08992 * 109.47431 * 240.24938 * 5 4 3 28 28 H 1.09001 * 109.47779 * 300.00698 * 9 7 6 29 29 H 1.08995 * 109.46684 * 60.00971 * 9 7 6 30 30 H 0.96998 * 120.00194 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6674 0.0023 5 6 4.7676 1.5465 0.0059 6 8 4.3620 2.9408 0.0126 7 6 5.3402 3.8599 0.0171 8 8 6.4969 3.5112 0.0150 9 6 4.9955 5.3270 0.0236 10 16 6.5188 6.3046 0.0278 11 6 5.8390 7.9302 0.0357 12 1 4.7677 8.0676 0.0372 13 6 6.6802 9.0342 0.0402 14 7 7.9859 8.8667 0.0390 15 14 5.9596 10.7575 0.0494 16 1 5.1241 10.9382 1.2637 17 1 7.0604 11.7543 0.0537 18 1 5.1215 10.9501 -1.1613 19 6 3.5350 -0.7323 -0.0049 20 17 4.9348 -1.7591 -0.0108 21 7 2.2889 -1.1329 -0.0062 22 1 -0.3633 -0.0051 1.0277 23 1 -0.3633 0.8926 -0.5094 24 1 -0.3634 -0.8874 -0.5183 25 1 1.9276 2.1193 0.0006 26 1 5.3627 1.3371 0.8948 27 1 5.3622 1.3454 -0.8851 28 1 4.4123 5.5672 -0.8654 29 1 4.4120 5.5591 0.9145 30 1 8.5738 9.6382 0.0417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816153478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = -32.419394 kcal Electronic energy + Delta-G solvation = -17424.579632 eV Core-core repulsion = 14180.557261 eV Total energy + Delta-G solvation = -3244.022371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.50403 -41.35653 -37.90265 -37.63783 -34.57568 -34.38178 -32.59617 -31.14232 -28.76701 -27.67321 -26.21818 -22.98653 -21.96988 -21.54348 -19.87056 -18.54190 -18.24790 -17.76598 -16.98072 -16.85250 -16.71059 -16.10372 -15.99160 -15.16024 -14.71930 -14.70905 -14.46439 -14.17618 -13.69343 -13.59006 -13.17839 -12.96843 -12.84330 -12.69475 -12.67747 -12.63251 -11.96905 -11.90392 -11.76262 -11.50358 -11.11141 -10.42994 -10.32638 -9.59643 -8.69473 -8.33952 -6.13337 0.37305 0.58510 1.02698 1.17611 1.26835 1.43317 1.47417 1.56136 1.78301 1.91910 2.27310 3.01233 3.28751 3.41737 3.68484 3.98247 4.11152 4.22610 4.24836 4.31135 4.44593 4.50144 4.53501 4.70466 4.73632 4.91713 5.31235 5.44467 5.84566 6.21304 6.25123 6.72195 7.07866 8.74954 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029839 B = 0.002979 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.152109 B = 9397.815861 C =10310.218752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.357 5.357 3 C 0.107 3.893 4 C -0.254 4.254 5 C 0.152 3.848 6 O -0.342 6.342 7 C 0.490 3.510 8 O -0.520 6.520 9 C -0.105 4.105 10 S -0.143 6.143 11 C -0.547 4.547 12 H 0.089 0.911 13 C 0.015 3.985 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.261 1.261 19 C 0.122 3.878 20 Cl 0.009 6.991 21 N -0.305 5.305 22 H 0.095 0.905 23 H 0.124 0.876 24 H 0.097 0.903 25 H 0.219 0.781 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.772 -16.481 -0.168 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.139 5.139 3 C -0.040 4.040 4 C -0.267 4.267 5 C 0.077 3.923 6 O -0.259 6.259 7 C 0.333 3.667 8 O -0.408 6.408 9 C -0.254 4.254 10 S 0.085 5.915 11 C -0.695 4.695 12 H 0.107 0.893 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.186 1.186 19 C -0.069 4.069 20 Cl 0.037 6.963 21 N -0.131 5.131 22 H 0.113 0.887 23 H 0.142 0.858 24 H 0.116 0.884 25 H 0.236 0.764 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.023 -18.007 -0.172 24.780 hybrid contribution -0.271 1.580 0.026 1.604 sum -17.294 -16.426 -0.145 23.852 Atomic orbital electron populations 1.22454 0.70109 1.06821 1.05521 1.48737 1.08236 1.02167 1.54803 1.22836 0.88818 0.95177 0.97208 1.19488 0.95325 0.91117 1.20722 1.20917 0.93224 0.75245 1.02900 1.86350 1.38429 1.16890 1.84199 1.23003 0.83387 0.88633 0.71701 1.90683 1.22362 1.82145 1.45625 1.23077 1.04598 0.89061 1.08615 1.85615 1.07328 1.01423 1.97180 1.23180 0.96046 0.91077 1.59175 0.89324 1.26115 0.94945 1.04286 0.93621 1.70164 1.03988 1.32787 1.47810 0.84996 0.77842 0.75547 0.79584 1.18578 1.20658 1.18556 1.22450 0.89703 0.90134 1.04597 1.98401 1.33775 1.67199 1.96915 1.77303 0.99780 1.09936 1.26081 0.88666 0.85772 0.88411 0.76404 0.90473 0.90452 0.85596 0.85611 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.47 127.77 1.47 2.01 16 2 N -0.36 -5.93 4.01 -369.56 -1.48 -7.41 16 3 C 0.11 1.87 10.82 83.54 0.90 2.77 16 4 C -0.25 -5.80 6.08 -20.12 -0.12 -5.92 16 5 C 0.15 3.94 5.88 71.24 0.42 4.36 16 6 O -0.34 -9.50 9.51 -51.37 -0.49 -9.99 16 7 C 0.49 17.50 7.97 71.24 0.57 18.07 16 8 O -0.52 -22.46 15.61 22.00 0.34 -22.12 16 9 C -0.11 -3.91 6.27 71.24 0.45 -3.47 16 10 S -0.14 -7.51 20.58 -56.49 -1.16 -8.68 16 11 C -0.55 -29.83 9.50 67.95 0.65 -29.19 16 12 H 0.09 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.02 0.84 5.49 84.86 0.47 1.31 16 14 N -0.91 -54.37 13.22 21.65 0.29 -54.09 16 15 Si 1.00 41.97 29.55 68.60 2.03 44.00 16 16 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 19 C 0.12 2.92 7.84 85.25 0.67 3.59 16 20 Cl 0.01 0.21 29.16 -2.72 -0.08 0.13 16 21 N -0.30 -7.07 12.58 -49.68 -0.62 -7.69 16 22 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 23 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 24 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.22 2.46 7.84 -2.91 -0.02 2.43 16 26 H 0.08 2.06 8.13 -2.39 -0.02 2.04 16 27 H 0.08 2.06 8.13 -2.39 -0.02 2.04 16 28 H 0.13 4.14 8.14 -2.40 -0.02 4.12 16 29 H 0.13 4.14 8.14 -2.40 -0.02 4.12 16 30 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -73.63 307.80 5.45 -68.18 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.17 Total: 4.12 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.46 Total: -6.46 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.82 Total: -69.19 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.14 Total: -32.11 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.16 Total: -8.68 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.08 Total: 0.13 kcal Total: -73.63 5.45 -68.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816153478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.763 kcal (2) G-P(sol) polarization free energy of solvation -73.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds