Wall clock time and date at job start Tue Mar 31 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36189 * 120.08728 * 2 1 4 4 C 1.39289 * 121.08647 * 179.97438 * 3 2 1 5 5 C 1.36188 * 120.82617 * 0.02562 * 4 3 2 6 6 C 1.40508 * 119.62417 * 359.97438 * 5 4 3 7 7 C 1.40538 * 121.18847 * 180.02562 * 6 5 4 8 8 C 1.39055 * 117.98202 * 179.97438 * 7 6 5 9 9 C 1.47581 * 120.28102 * 180.27830 * 8 7 6 10 10 O 1.21616 * 119.99814 * 179.71743 * 9 8 7 11 11 N 1.34767 * 120.00274 * 359.71540 * 9 8 7 12 12 C 1.36861 * 120.00258 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00341 * 359.97438 * 12 11 9 14 14 C 1.39057 * 119.99959 * 180.02562 * 12 11 9 15 15 N 1.31360 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99894 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47196 * 60.00286 * 16 14 12 18 18 H 1.48502 * 109.47191 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47310 * 299.99591 * 16 14 12 20 20 C 1.40845 * 119.43603 * 359.97438 * 8 7 6 21 21 Cl 1.73598 * 119.25137 * 179.97438 * 20 8 7 22 22 N 1.30911 * 121.49299 * 359.97438 * 20 8 7 23 23 C 1.33856 * 121.71322 * 0.02562 * 22 20 8 24 24 H 1.09003 * 109.47505 * 269.98265 * 1 2 3 25 25 H 1.09000 * 109.47332 * 29.98461 * 1 2 3 26 26 H 1.09005 * 109.46999 * 149.97837 * 1 2 3 27 27 H 1.07994 * 119.45774 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.58852 * 180.02562 * 4 3 2 29 29 H 1.08008 * 120.18441 * 180.02562 * 5 4 3 30 30 H 1.07992 * 121.00885 * 359.97438 * 7 6 5 31 31 H 0.97001 * 120.00034 * 0.02562 * 11 9 8 32 32 H 0.97005 * 119.99759 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1897 1.1784 0.0000 4 6 3.5824 1.2027 0.0005 5 6 4.3005 0.0456 0.0005 6 6 3.6290 -1.1887 0.0006 7 6 4.3372 -2.4025 0.0011 8 6 3.6054 -3.5849 0.0016 9 6 4.2973 -4.8884 0.0084 10 8 3.6522 -5.9193 0.0141 11 7 5.6442 -4.9364 0.0083 12 6 6.2859 -6.1453 0.0141 13 1 5.7130 -7.0608 0.0191 14 6 7.6756 -6.1947 0.0146 15 7 8.3724 -5.0812 0.0090 16 14 8.5514 -7.8446 0.0217 17 1 8.1654 -8.6152 -1.1877 18 1 10.0201 -7.6254 0.0217 19 1 8.1650 -8.6049 1.2374 20 6 2.1981 -3.5279 0.0022 21 17 1.2892 -5.0069 0.0021 22 7 1.5600 -2.3848 0.0027 23 6 2.2113 -1.2154 0.0022 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6423 2.1093 0.0004 28 1 4.0992 2.1510 0.0009 29 1 5.3802 0.0765 0.0014 30 1 5.4171 -2.4166 0.0011 31 1 6.1588 -4.1142 0.0042 32 1 9.3418 -5.1157 0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816955205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:27 Heat of formation + Delta-G solvation = 12.121942 kcal Electronic energy + Delta-G solvation = -19748.386434 eV Core-core repulsion = 16506.684663 eV Total energy + Delta-G solvation = -3241.701771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76267 -38.42273 -36.91317 -35.77783 -34.18982 -34.05060 -31.75499 -30.82442 -30.27098 -26.87658 -25.55816 -24.22235 -23.44813 -20.99566 -20.15953 -18.31563 -18.15319 -17.19513 -16.47669 -15.36922 -14.93645 -14.81854 -14.47373 -14.38060 -13.88036 -13.63274 -13.57211 -13.05596 -12.87522 -12.76179 -12.13388 -12.02316 -11.80447 -11.59918 -11.36833 -11.22350 -10.67964 -10.64880 -10.52656 -10.42720 -10.16547 -9.68359 -9.60659 -8.47578 -8.27658 -8.19964 -8.03547 -6.71291 -3.98560 0.36044 0.74027 1.97449 2.27547 2.74229 3.12481 3.14380 3.18440 3.87728 3.96560 4.33109 4.42041 4.57320 4.73580 4.80646 4.94028 5.10395 5.14905 5.19507 5.26894 5.48127 5.67141 5.70138 5.75070 5.86554 6.06688 6.21018 6.22668 6.42678 6.45519 6.52273 6.86472 7.29070 7.76997 7.88272 8.35774 8.92218 9.25352 9.84465 10.44823 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.004811 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.724126 B = 5818.279488 C = 7159.850540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.060 4.060 3 C -0.111 4.111 4 C -0.117 4.117 5 C -0.096 4.096 6 C -0.096 4.096 7 C -0.045 4.045 8 C -0.133 4.133 9 C 0.461 3.539 10 O -0.572 6.572 11 N -0.537 5.537 12 C -0.284 4.284 13 H 0.112 0.888 14 C 0.023 3.977 15 N -0.883 5.883 16 Si 0.938 3.062 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.270 1.270 20 C 0.243 3.757 21 Cl 0.007 6.993 22 N -0.477 5.477 23 C 0.138 3.862 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.151 0.849 31 H 0.392 0.608 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 12.601 -0.036 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.060 4.060 3 C -0.131 4.131 4 C -0.135 4.135 5 C -0.115 4.115 6 C -0.098 4.098 7 C -0.073 4.073 8 C -0.140 4.140 9 C 0.248 3.752 10 O -0.458 6.458 11 N -0.171 5.171 12 C -0.414 4.414 13 H 0.130 0.870 14 C -0.181 4.181 15 N -0.522 5.522 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.195 1.195 20 C 0.062 3.938 21 Cl 0.035 6.965 22 N -0.188 5.188 23 C 0.016 3.984 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.168 0.832 31 H 0.227 0.773 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.596 11.870 -0.033 14.655 hybrid contribution 1.762 -0.292 0.019 1.786 sum -6.834 11.578 -0.014 13.444 Atomic orbital electron populations 1.20681 0.90222 1.02977 1.02500 1.19516 0.96603 0.90564 0.99353 1.20732 0.94273 0.97291 1.00779 1.20840 0.94003 0.98308 1.00395 1.21029 1.00151 0.90998 0.99304 1.18769 0.93790 0.94584 1.02650 1.21976 1.00569 0.90036 0.94728 1.20970 0.93020 0.96375 1.03616 1.17282 0.82941 0.87333 0.87615 1.90715 1.64703 1.33697 1.56649 1.41925 1.04527 1.09658 1.60950 1.19897 0.89431 0.86436 1.45596 0.87016 1.25445 0.96516 0.99547 0.96623 1.69572 1.08186 1.27294 1.47131 0.85784 0.77656 0.80677 0.79492 1.19471 1.20682 1.19479 1.21882 0.88328 0.88831 0.94744 1.98431 1.74295 1.28234 1.95499 1.67257 1.39810 0.96639 1.15131 1.18488 0.89455 0.90971 0.99480 0.91141 0.91833 0.90301 0.85539 0.85605 0.84945 0.83172 0.77344 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.79 36.00 0.35 -0.84 16 2 C -0.06 -0.79 5.89 -104.52 -0.62 -1.41 16 3 C -0.11 -1.20 9.58 -39.93 -0.38 -1.59 16 4 C -0.12 -1.25 9.96 -39.93 -0.40 -1.65 16 5 C -0.10 -1.20 9.77 -39.46 -0.39 -1.59 16 6 C -0.10 -1.52 5.74 -106.81 -0.61 -2.13 16 7 C -0.05 -0.79 9.39 -38.41 -0.36 -1.15 16 8 C -0.13 -2.72 5.89 -104.80 -0.62 -3.34 16 9 C 0.46 11.08 7.71 -12.45 -0.10 10.98 16 10 O -0.57 -15.17 13.50 5.26 0.07 -15.10 16 11 N -0.54 -13.19 5.23 -11.91 -0.06 -13.25 16 12 C -0.28 -7.49 9.68 -15.00 -0.15 -7.64 16 13 H 0.11 3.06 7.15 -52.49 -0.38 2.69 16 14 C 0.02 0.58 5.50 -17.45 -0.10 0.48 16 15 N -0.88 -22.31 13.05 55.50 0.72 -21.59 16 16 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 C 0.24 4.85 7.31 -16.96 -0.12 4.72 16 21 Cl 0.01 0.13 26.11 -51.86 -1.35 -1.22 16 22 N -0.48 -8.71 9.32 -7.78 -0.07 -8.78 16 23 C 0.14 2.27 6.59 -84.78 -0.56 1.71 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.08 0.99 7.54 -51.93 -0.39 0.59 16 27 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.15 2.39 6.48 -52.49 -0.34 2.05 16 31 H 0.39 9.02 5.96 -40.82 -0.24 8.78 16 32 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 296.70 15.07 4.47 4.47 Total: -1.00 -29.25 296.70 -7.88 -37.13 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -2.60 Total: 7.04 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -4.04 Total: -3.42 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.59 Total: -43.62 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.07 Total: -15.10 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.35 Total: -1.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.25 -7.88 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816955205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds