Wall clock time and date at job start Tue Mar 31 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36189 * 120.08728 * 2 1 4 4 C 1.39289 * 121.08647 * 179.97438 * 3 2 1 5 5 C 1.36188 * 120.82617 * 0.02562 * 4 3 2 6 6 C 1.40508 * 119.62417 * 359.97438 * 5 4 3 7 7 C 1.40538 * 121.18847 * 180.02562 * 6 5 4 8 8 C 1.39055 * 117.98202 * 179.97438 * 7 6 5 9 9 C 1.47581 * 120.28102 * 180.27830 * 8 7 6 10 10 O 1.21616 * 119.99814 * 179.71743 * 9 8 7 11 11 N 1.34767 * 120.00274 * 359.71540 * 9 8 7 12 12 C 1.36861 * 120.00258 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00341 * 359.97438 * 12 11 9 14 14 C 1.39057 * 119.99959 * 180.02562 * 12 11 9 15 15 N 1.31360 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99894 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47196 * 60.00286 * 16 14 12 18 18 H 1.48502 * 109.47191 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47310 * 299.99591 * 16 14 12 20 20 C 1.40845 * 119.43603 * 359.97438 * 8 7 6 21 21 Cl 1.73598 * 119.25137 * 179.97438 * 20 8 7 22 22 N 1.30911 * 121.49299 * 359.97438 * 20 8 7 23 23 C 1.33856 * 121.71322 * 0.02562 * 22 20 8 24 24 H 1.09003 * 109.47505 * 269.98265 * 1 2 3 25 25 H 1.09000 * 109.47332 * 29.98461 * 1 2 3 26 26 H 1.09005 * 109.46999 * 149.97837 * 1 2 3 27 27 H 1.07994 * 119.45774 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.58852 * 180.02562 * 4 3 2 29 29 H 1.08008 * 120.18441 * 180.02562 * 5 4 3 30 30 H 1.07992 * 121.00885 * 359.97438 * 7 6 5 31 31 H 0.97001 * 120.00034 * 0.02562 * 11 9 8 32 32 H 0.97005 * 119.99759 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1897 1.1784 0.0000 4 6 3.5824 1.2027 0.0005 5 6 4.3005 0.0456 0.0005 6 6 3.6290 -1.1887 0.0006 7 6 4.3372 -2.4025 0.0011 8 6 3.6054 -3.5849 0.0016 9 6 4.2973 -4.8884 0.0084 10 8 3.6522 -5.9193 0.0141 11 7 5.6442 -4.9364 0.0083 12 6 6.2859 -6.1453 0.0141 13 1 5.7130 -7.0608 0.0191 14 6 7.6756 -6.1947 0.0146 15 7 8.3724 -5.0812 0.0090 16 14 8.5514 -7.8446 0.0217 17 1 8.1654 -8.6152 -1.1877 18 1 10.0201 -7.6254 0.0217 19 1 8.1650 -8.6049 1.2374 20 6 2.1981 -3.5279 0.0022 21 17 1.2892 -5.0069 0.0021 22 7 1.5600 -2.3848 0.0027 23 6 2.2113 -1.2154 0.0022 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6423 2.1093 0.0004 28 1 4.0992 2.1510 0.0009 29 1 5.3802 0.0765 0.0014 30 1 5.4171 -2.4166 0.0011 31 1 6.1588 -4.1142 0.0042 32 1 9.3418 -5.1157 0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816955205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:26 Heat of formation + Delta-G solvation = -5.773143 kcal Electronic energy + Delta-G solvation = -19749.162423 eV Core-core repulsion = 16506.684663 eV Total energy + Delta-G solvation = -3242.477760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.04735 -40.11912 -38.28979 -37.19670 -36.07964 -35.27762 -33.47164 -32.21191 -31.51489 -27.87889 -27.29635 -25.62452 -24.77622 -22.22310 -21.70174 -20.16823 -19.44536 -18.61379 -17.89773 -16.97637 -16.38779 -16.22686 -15.96036 -15.57716 -15.33881 -15.18924 -15.03270 -14.36295 -14.12262 -14.07056 -13.58954 -13.19038 -13.13482 -12.95757 -12.61620 -12.49574 -12.37110 -12.21311 -12.06203 -11.96235 -11.63201 -11.37942 -10.99929 -10.12157 -10.11970 -9.74796 -9.13345 -8.57179 -5.98786 -0.86294 -0.55787 0.79513 0.81130 1.37363 1.42838 1.53271 1.58207 2.24739 2.32638 2.86056 2.92864 3.24929 3.34156 3.43999 3.61030 3.68865 3.98100 4.15488 4.27071 4.33560 4.46071 4.63601 4.78948 4.84694 4.86475 4.95460 5.31362 5.32018 5.34955 5.43464 5.48427 5.84661 5.90290 6.46376 6.51754 7.01385 7.38810 7.97267 8.59597 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.004811 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.724126 B = 5818.279488 C = 7159.850540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.081 4.081 3 C -0.084 4.084 4 C -0.099 4.099 5 C -0.102 4.102 6 C -0.112 4.112 7 C -0.020 4.020 8 C -0.168 4.168 9 C 0.465 3.535 10 O -0.603 6.603 11 N -0.547 5.547 12 C -0.329 4.329 13 H 0.088 0.912 14 C -0.006 4.006 15 N -0.906 5.906 16 Si 0.997 3.003 17 H -0.271 1.271 18 H -0.267 1.267 19 H -0.271 1.271 20 C 0.223 3.777 21 Cl -0.009 7.009 22 N -0.478 5.478 23 C 0.120 3.880 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.171 0.829 28 H 0.171 0.829 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.396 0.604 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 16.820 -0.037 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 C -0.104 4.104 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.048 4.048 8 C -0.174 4.174 9 C 0.253 3.747 10 O -0.490 6.490 11 N -0.182 5.182 12 C -0.458 4.458 13 H 0.106 0.894 14 C -0.208 4.208 15 N -0.546 5.546 16 Si 0.820 3.180 17 H -0.196 1.196 18 H -0.191 1.191 19 H -0.196 1.196 20 C 0.042 3.958 21 Cl 0.020 6.980 22 N -0.189 5.189 23 C -0.002 4.002 24 H 0.094 0.906 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.188 0.812 28 H 0.188 0.812 29 H 0.173 0.827 30 H 0.179 0.821 31 H 0.232 0.768 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.451 16.128 -0.035 18.208 hybrid contribution 1.496 -1.109 0.019 1.862 sum -6.956 15.019 -0.016 16.551 Atomic orbital electron populations 1.20704 0.88914 1.03507 1.03013 1.19880 0.97845 0.90109 1.00375 1.21325 0.94730 0.97874 0.96464 1.21418 0.94039 0.99327 0.96845 1.21368 1.01598 0.90119 0.99010 1.19015 0.93756 0.95259 1.03324 1.22203 1.01066 0.89899 0.91609 1.20670 0.93368 0.95542 1.07851 1.17851 0.82809 0.88390 0.85617 1.90666 1.65482 1.35510 1.57294 1.41821 1.04602 1.09356 1.62434 1.19781 0.90243 0.86405 1.49405 0.89437 1.26131 0.96367 1.02743 0.95569 1.69614 1.08504 1.28503 1.47937 0.84925 0.77103 0.76867 0.79126 1.19562 1.19143 1.19573 1.21810 0.88078 0.89110 0.96763 1.98408 1.74469 1.29365 1.95776 1.67270 1.39984 0.96780 1.14903 1.19111 0.90305 0.91420 0.99334 0.90604 0.88638 0.92491 0.81200 0.81173 0.82666 0.82056 0.76816 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 9.79 71.23 0.70 -1.31 16 2 C -0.08 -1.87 5.89 -19.80 -0.12 -1.98 16 3 C -0.08 -1.31 9.58 22.05 0.21 -1.10 16 4 C -0.10 -1.47 9.96 22.04 0.22 -1.25 16 5 C -0.10 -2.12 9.77 22.35 0.22 -1.90 16 6 C -0.11 -3.31 5.74 -21.28 -0.12 -3.44 16 7 C -0.02 -0.71 9.39 23.03 0.22 -0.49 16 8 C -0.17 -7.14 5.89 -19.98 -0.12 -7.25 16 9 C 0.47 23.65 7.71 86.71 0.67 24.32 16 10 O -0.60 -34.00 13.50 -4.08 -0.06 -34.05 16 11 N -0.55 -28.26 5.23 -309.86 -1.62 -29.88 16 12 C -0.33 -18.29 9.68 84.11 0.81 -17.47 16 13 H 0.09 5.15 7.15 -2.91 -0.02 5.13 16 14 C -0.01 -0.32 5.50 84.96 0.47 0.15 16 15 N -0.91 -46.50 13.05 21.68 0.28 -46.22 16 16 Si 1.00 41.31 29.55 68.60 2.03 43.33 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 18 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 C 0.22 9.22 7.31 85.47 0.62 9.85 16 21 Cl -0.01 -0.38 26.11 -2.72 -0.07 -0.45 16 22 N -0.48 -17.59 9.32 -178.53 -1.66 -19.26 16 23 C 0.12 3.76 6.59 40.26 0.27 4.03 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 26 H 0.06 1.35 7.54 -2.38 -0.02 1.33 16 27 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 28 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.16 5.11 6.48 -2.91 -0.02 5.09 16 31 H 0.40 19.01 5.96 -92.71 -0.55 18.46 16 32 H 0.28 13.52 8.31 -92.70 -0.77 12.75 16 Total: -1.00 -68.22 296.70 3.58 -64.64 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.63 Total: 19.73 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 4.05 Total: 2.14 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -3.00 Total: -95.35 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.06 Total: -34.05 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.07 Total: -0.45 kcal Total: -68.22 3.58 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816955205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.872 kcal (2) G-P(sol) polarization free energy of solvation -68.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds