Wall clock time and date at job start Tue Mar 31 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 115.55101 * 2 1 4 4 N 1.46495 * 109.47133 * 279.79635 * 3 2 1 5 5 C 1.34775 * 120.00059 * 179.82347 * 4 3 2 6 6 O 1.21591 * 120.00207 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00143 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99998 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47026 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00097 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99696 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00194 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99782 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47243 * 90.00216 * 13 11 9 15 15 H 1.48502 * 109.47191 * 210.00322 * 13 11 9 16 16 H 1.48502 * 109.47280 * 330.00191 * 13 11 9 17 17 C 1.53000 * 117.52024 * 145.69901 * 2 1 3 18 18 C 1.53001 * 117.49882 * 214.33342 * 2 1 3 19 19 H 1.09000 * 117.50154 * 359.97438 * 18 2 1 20 20 Br 1.96604 * 117.49956 * 144.97376 * 18 2 1 21 21 H 1.09001 * 109.47295 * 64.28794 * 1 2 3 22 22 H 1.09000 * 109.47290 * 184.28472 * 1 2 3 23 23 H 1.09000 * 109.47235 * 304.28551 * 1 2 3 24 24 H 1.08997 * 109.47355 * 159.79572 * 3 2 1 25 25 H 1.09003 * 109.46493 * 39.79607 * 3 2 1 26 26 H 0.96998 * 120.00572 * 359.82247 * 4 3 2 27 27 H 0.96993 * 120.00134 * 359.97438 * 7 5 4 28 28 H 1.09005 * 109.46778 * 299.99394 * 8 7 5 29 29 H 1.08999 * 109.47423 * 59.99419 * 8 7 5 30 30 H 0.97006 * 119.99796 * 179.97438 * 12 11 9 31 31 H 1.09000 * 117.50310 * 214.96813 * 17 2 1 32 32 H 1.08995 * 117.49505 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1885 1.9223 -1.3610 5 6 2.7190 3.1374 -1.6031 6 8 3.1984 3.7841 -0.6918 7 7 2.7173 3.6362 -2.8552 8 6 3.2945 4.9568 -3.1184 9 6 3.1676 5.2771 -4.5855 10 1 2.7031 4.5681 -5.2548 11 6 3.6436 6.4757 -5.0730 12 7 4.2088 7.3392 -4.2579 13 14 3.4858 6.8731 -6.8915 14 1 2.1975 7.5700 -7.1359 15 1 4.6098 7.7507 -7.3058 16 1 3.5246 5.6143 -7.6784 17 6 2.2369 -1.1209 0.7647 18 6 2.2364 -1.1207 -0.7654 19 1 1.6112 -1.8582 -1.2687 20 35 3.9223 -0.6766 -1.6742 21 1 -0.3634 0.4458 -0.9259 22 1 -0.3634 -1.0248 0.0768 23 1 -0.3634 0.5789 0.8491 24 1 3.2167 1.2923 0.3549 25 1 1.6342 2.0487 0.6578 26 1 1.8058 1.4067 -2.0880 27 1 2.3346 3.1206 -3.5821 28 1 2.7629 5.7085 -2.5348 29 1 4.3474 4.9559 -2.8367 30 1 4.5440 8.1824 -4.6010 31 1 3.1721 -0.8750 1.2677 32 1 1.6120 -1.8584 1.2683 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856889844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:10 Heat of formation + Delta-G solvation = -12.489994 kcal Electronic energy + Delta-G solvation = -15538.700919 eV Core-core repulsion = 12774.195289 eV Total energy + Delta-G solvation = -2764.505630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.037 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49475 -38.21883 -34.15837 -33.49791 -32.17005 -30.55683 -28.56745 -27.57860 -25.79598 -22.54287 -22.24451 -20.01754 -19.48277 -17.87837 -16.20469 -15.83399 -15.58105 -14.86061 -14.56021 -14.36452 -13.56355 -13.34224 -12.99122 -12.96019 -12.50264 -11.93819 -11.88689 -11.76140 -11.43224 -11.31168 -10.91190 -10.83838 -10.70244 -10.24860 -9.84115 -9.60239 -9.31107 -9.28777 -8.68232 -8.54176 -7.65011 -6.10092 -4.16120 1.50294 2.96851 3.28156 3.33985 3.36621 3.63339 4.06461 4.16597 4.31906 4.37882 4.44102 4.67144 5.15846 5.24413 5.25987 5.32177 5.46468 5.53906 5.60779 5.76574 5.90875 5.99590 6.95846 7.21556 7.60559 7.63787 7.65032 7.98973 8.12328 8.83803 9.04615 9.42244 9.57142 11.00241 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.004241 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.460252 B = 6600.664364 C = 7065.169664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 C 0.176 3.824 4 N -0.748 5.748 5 C 0.696 3.304 6 O -0.604 6.604 7 N -0.730 5.730 8 C 0.268 3.732 9 C -0.540 4.540 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.142 4.142 18 C -0.126 4.126 19 H 0.136 0.864 20 Br -0.102 7.102 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.390 0.610 27 H 0.385 0.615 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.265 0.735 31 H 0.110 0.890 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -21.311 7.731 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C 0.051 3.949 4 N -0.405 5.405 5 C 0.396 3.604 6 O -0.483 6.483 7 N -0.382 5.382 8 C 0.147 3.853 9 C -0.578 4.578 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.730 3.270 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.180 4.180 18 C -0.222 4.222 19 H 0.154 0.846 20 Br -0.020 7.020 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.223 0.777 27 H 0.217 0.783 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.299 -20.315 8.247 22.557 hybrid contribution -0.715 -0.383 -1.531 1.732 sum -6.014 -20.699 6.717 22.577 Atomic orbital electron populations 1.21367 0.90537 1.02143 1.03176 1.22111 0.95848 0.91198 1.02895 1.20541 1.00119 0.89741 0.84494 1.44988 1.66855 1.19130 1.09563 1.16075 0.79352 0.80674 0.84311 1.90864 1.52887 1.60386 1.44177 1.45672 1.63814 1.22441 1.06243 1.18950 0.93778 0.76903 0.95713 1.21238 1.40477 1.03174 0.92929 0.91999 1.24937 0.94836 0.95895 0.98352 1.69984 1.38609 1.08826 1.34956 0.86430 0.77751 0.78357 0.84429 1.20516 1.21054 1.19804 1.23439 1.03086 1.00177 0.91304 1.25710 0.95151 1.05115 0.96238 0.84602 1.97473 1.30694 1.94547 1.79322 0.91411 0.92185 0.91082 0.91364 0.91079 0.77657 0.78275 0.95825 0.95846 0.92532 0.87210 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.72 37.16 0.36 -0.47 16 2 C -0.12 -1.06 2.11 -154.51 -0.33 -1.38 16 3 C 0.18 2.30 4.79 -4.04 -0.02 2.29 16 4 N -0.75 -11.46 4.54 -65.23 -0.30 -11.75 16 5 C 0.70 14.78 8.57 -86.92 -0.74 14.04 16 6 O -0.60 -15.51 16.34 5.29 0.09 -15.42 16 7 N -0.73 -16.17 5.55 -66.41 -0.37 -16.54 16 8 C 0.27 7.37 5.43 -5.19 -0.03 7.34 16 9 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 10 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 13 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.14 -1.04 9.69 -26.73 -0.26 -1.30 16 18 C -0.13 -1.08 6.65 -26.73 -0.18 -1.26 16 19 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 20 Br -0.10 -1.23 31.97 -68.01 -2.17 -3.40 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.33 8.10 -51.93 -0.42 -0.09 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.99 7.68 -51.93 -0.40 0.60 16 25 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 26 H 0.39 5.11 8.37 -40.82 -0.34 4.76 16 27 H 0.39 7.39 8.33 -40.82 -0.34 7.05 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.11 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -33.18 297.70 -8.58 -41.75 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.41 Total: 4.96 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.61 Total: 5.61 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.07 Total: -54.18 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.09 Total: -15.42 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 35 Polarization: -1.23 SS G_CDS: -2.17 Total: -3.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.18 -8.58 -41.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856889844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.261 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds