Wall clock time and date at job start Tue Mar 31 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 115.55101 * 2 1 4 4 N 1.46495 * 109.47133 * 279.79635 * 3 2 1 5 5 C 1.34775 * 120.00059 * 179.82347 * 4 3 2 6 6 O 1.21591 * 120.00207 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00143 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99998 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47026 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00097 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99696 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00194 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99782 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47243 * 90.00216 * 13 11 9 15 15 H 1.48502 * 109.47191 * 210.00322 * 13 11 9 16 16 H 1.48502 * 109.47280 * 330.00191 * 13 11 9 17 17 C 1.53000 * 117.52024 * 145.69901 * 2 1 3 18 18 C 1.53001 * 117.49882 * 214.33342 * 2 1 3 19 19 H 1.09000 * 117.50154 * 359.97438 * 18 2 1 20 20 Br 1.96604 * 117.49956 * 144.97376 * 18 2 1 21 21 H 1.09001 * 109.47295 * 64.28794 * 1 2 3 22 22 H 1.09000 * 109.47290 * 184.28472 * 1 2 3 23 23 H 1.09000 * 109.47235 * 304.28551 * 1 2 3 24 24 H 1.08997 * 109.47355 * 159.79572 * 3 2 1 25 25 H 1.09003 * 109.46493 * 39.79607 * 3 2 1 26 26 H 0.96998 * 120.00572 * 359.82247 * 4 3 2 27 27 H 0.96993 * 120.00134 * 359.97438 * 7 5 4 28 28 H 1.09005 * 109.46778 * 299.99394 * 8 7 5 29 29 H 1.08999 * 109.47423 * 59.99419 * 8 7 5 30 30 H 0.97006 * 119.99796 * 179.97438 * 12 11 9 31 31 H 1.09000 * 117.50310 * 214.96813 * 17 2 1 32 32 H 1.08995 * 117.49505 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1885 1.9223 -1.3610 5 6 2.7190 3.1374 -1.6031 6 8 3.1984 3.7841 -0.6918 7 7 2.7173 3.6362 -2.8552 8 6 3.2945 4.9568 -3.1184 9 6 3.1676 5.2771 -4.5855 10 1 2.7031 4.5681 -5.2548 11 6 3.6436 6.4757 -5.0730 12 7 4.2088 7.3392 -4.2579 13 14 3.4858 6.8731 -6.8915 14 1 2.1975 7.5700 -7.1359 15 1 4.6098 7.7507 -7.3058 16 1 3.5246 5.6143 -7.6784 17 6 2.2369 -1.1209 0.7647 18 6 2.2364 -1.1207 -0.7654 19 1 1.6112 -1.8582 -1.2687 20 35 3.9223 -0.6766 -1.6742 21 1 -0.3634 0.4458 -0.9259 22 1 -0.3634 -1.0248 0.0768 23 1 -0.3634 0.5789 0.8491 24 1 3.2167 1.2923 0.3549 25 1 1.6342 2.0487 0.6578 26 1 1.8058 1.4067 -2.0880 27 1 2.3346 3.1206 -3.5821 28 1 2.7629 5.7085 -2.5348 29 1 4.3474 4.9559 -2.8367 30 1 4.5440 8.1824 -4.6010 31 1 3.1721 -0.8750 1.2677 32 1 1.6120 -1.8584 1.2683 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856889844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:10 Heat of formation + Delta-G solvation = -36.240865 kcal Electronic energy + Delta-G solvation = -15539.730834 eV Core-core repulsion = 12774.195289 eV Total energy + Delta-G solvation = -2765.535545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.037 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95253 -39.32467 -36.13861 -35.03867 -34.21294 -31.34565 -29.67341 -29.00965 -27.23789 -24.48572 -23.04291 -21.74380 -20.47532 -19.53155 -17.98679 -17.33836 -16.83090 -16.45018 -16.15279 -15.62702 -14.97216 -14.80586 -14.39149 -14.00691 -13.93229 -13.64533 -13.11382 -12.88645 -12.70208 -12.56771 -12.33909 -12.21437 -12.11209 -11.53852 -11.45957 -11.15088 -10.78789 -10.64880 -10.44693 -10.12796 -9.50306 -8.26964 -6.43252 0.76828 1.43688 1.46765 1.57659 1.85101 2.31975 2.38854 2.55886 3.07967 3.40704 3.53738 3.63848 3.77799 3.94068 4.48681 4.70313 4.77986 4.84295 4.92858 4.98295 5.04344 5.11243 5.29422 5.35097 5.51120 5.57531 5.71175 5.87601 6.29527 6.68669 7.26229 7.35155 7.78111 8.85540 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.004241 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.460252 B = 6600.664364 C = 7065.169664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C 0.172 3.828 4 N -0.721 5.721 5 C 0.695 3.305 6 O -0.652 6.652 7 N -0.724 5.724 8 C 0.287 3.713 9 C -0.554 4.554 10 H 0.082 0.918 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.986 3.014 14 H -0.269 1.269 15 H -0.284 1.284 16 H -0.257 1.257 17 C -0.124 4.124 18 C -0.120 4.120 19 H 0.163 0.837 20 Br -0.144 7.144 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.406 0.594 27 H 0.403 0.597 28 H -0.014 1.014 29 H -0.018 1.018 30 H 0.269 0.731 31 H 0.102 0.898 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 -23.540 6.642 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C 0.048 3.952 4 N -0.377 5.377 5 C 0.394 3.606 6 O -0.535 6.535 7 N -0.378 5.378 8 C 0.164 3.836 9 C -0.592 4.592 10 H 0.101 0.899 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.809 3.191 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.180 1.180 17 C -0.162 4.162 18 C -0.216 4.216 19 H 0.181 0.819 20 Br -0.063 7.063 21 H 0.080 0.920 22 H 0.105 0.895 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.241 0.759 27 H 0.237 0.763 28 H 0.004 0.996 29 H 0.000 1.000 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.114 -22.634 7.155 24.781 hybrid contribution -0.187 0.257 -1.061 1.107 sum -7.301 -22.377 6.094 24.314 Atomic orbital electron populations 1.21380 0.88653 1.03853 1.02931 1.21979 0.96880 0.88853 1.04569 1.20676 0.99677 0.92249 0.82615 1.44758 1.64811 1.16898 1.11270 1.16242 0.79163 0.81915 0.83257 1.90829 1.54964 1.62198 1.45490 1.45272 1.63972 1.21094 1.07430 1.18378 0.91074 0.78500 0.95691 1.21594 1.40694 1.03941 0.92930 0.89949 1.26059 0.93953 0.95531 1.03990 1.70149 1.39600 1.09492 1.37758 0.85143 0.77884 0.78617 0.77459 1.19466 1.20946 1.18048 1.23599 1.02848 0.99296 0.90489 1.25920 0.93316 1.05211 0.97117 0.81939 1.97482 1.33761 1.94787 1.80225 0.91977 0.89502 0.91082 0.93074 0.91843 0.75868 0.76256 0.99649 0.99965 0.92263 0.87998 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.72 71.98 0.70 -0.54 16 2 C -0.12 -1.86 2.11 -52.18 -0.11 -1.97 16 3 C 0.17 4.42 4.79 86.38 0.41 4.84 16 4 N -0.72 -21.84 4.54 -478.53 -2.17 -24.02 16 5 C 0.69 30.22 8.57 179.06 1.53 31.75 16 6 O -0.65 -34.99 16.34 -4.00 -0.07 -35.06 16 7 N -0.72 -32.72 5.55 -482.28 -2.68 -35.40 16 8 C 0.29 16.46 5.43 85.63 0.46 16.93 16 9 C -0.55 -30.98 9.28 25.60 0.24 -30.74 16 10 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 11 C 0.00 0.23 5.46 84.65 0.46 0.70 16 12 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 13 Si 0.99 43.10 29.54 68.60 2.03 45.12 16 14 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 17 C -0.12 -1.43 9.69 30.60 0.30 -1.13 16 18 C -0.12 -1.71 6.65 30.60 0.20 -1.51 16 19 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 20 Br -0.14 -3.34 31.97 -20.37 -0.65 -3.99 16 21 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.09 0.55 8.10 -2.39 -0.02 0.53 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 1.51 7.68 -2.39 -0.02 1.49 16 25 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 26 H 0.41 10.04 8.37 -92.71 -0.78 9.27 16 27 H 0.40 15.23 8.33 -92.71 -0.77 14.45 16 28 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 29 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 30 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 31 H 0.10 1.41 8.08 -2.39 -0.02 1.39 16 32 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -75.17 297.70 0.53 -74.64 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.41 Total: 17.43 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 4.20 Total: 18.32 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -4.57 Total: -116.47 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.07 Total: -35.06 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 35 Polarization: -3.34 SS G_CDS: -0.65 Total: -3.99 kcal Total: -75.17 0.53 -74.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856889844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.396 kcal (2) G-P(sol) polarization free energy of solvation -75.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds